mRNA_A-nodosum_M_contig1222.18.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1222.18.1
Unique NamemRNA_A-nodosum_M_contig1222.18.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1222.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1222contigA-nodosum_M_contig1222:230717..231208 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog225117.XP_009343509.1
PFAMsDUF4219,Retrotran_gag_2
Model size492
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.62e-05
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37V5K@33090|Viridiplantae,3GICD@35493|Streptophyta,4JSBY@91835|fabids
Descriptiongag-polypeptide of LTR copia-type
Cds size492
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866650.8825312-CDS-A-nodosum_M_contig1222:230716..2312081680866650.8825312-CDS-A-nodosum_M_contig1222:230716..231208Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1222 230717..231208 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1222.18.1prot_A-nodosum_M_contig1222.18.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1222 230717..231208 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1222.18.1

>prot_A-nodosum_M_contig1222.18.1 ID=prot_A-nodosum_M_contig1222.18.1|Name=mRNA_A-nodosum_M_contig1222.18.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=164bp
RAEIERLHDRTLVQKSLQVWQSLTKAVEKETEIMKMVLEIDSPSEAWRAL
SKIADETEDVAYDRAKREFETLEMGVNESVTEYFARVNIVLMKLERHNII
MPAREIKRIILNSLTPRFPNETCLYAIRDDFELKDLENGLARVEKFQSEQ
KRRSAPFHTLVVAH
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mRNA from alignment at A-nodosum_M_contig1222:230717..231208-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1222.18.1 ID=mRNA_A-nodosum_M_contig1222.18.1|Name=mRNA_A-nodosum_M_contig1222.18.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=492bp|location=Sequence derived from alignment at A-nodosum_M_contig1222:230717..231208- (Ascophyllum nodosum dioecious)
CGCGCCGAAATCGAAAGATTACACGATCGCACGTTGGTACAAAAATCCCT
GCAAGTATGGCAATCACTAACAAAAGCTGTAGAGAAGGAAACTGAAATCA
TGAAGATGGTATTAGAGATAGATTCCCCCTCAGAAGCATGGCGCGCACTA
TCGAAAATAGCGGACGAGACGGAAGACGTTGCGTACGATAGAGCGAAAAG
AGAATTTGAAACCCTGGAGATGGGAGTAAACGAGTCTGTAACCGAGTACT
TCGCTCGCGTAAACATCGTTCTGATGAAACTTGAAAGGCATAACATAATA
ATGCCCGCACGAGAGATCAAGCGCATTATACTGAACAGCTTGACCCCACG
TTTCCCAAATGAGACTTGTCTGTATGCAATAAGAGATGACTTCGAATTGA
AAGACCTGGAAAATGGGCTGGCTCGCGTGGAGAAGTTTCAGTCGGAACAG
AAGAGAAGGAGCGCCCCGTTCCACACGTTAGTCGTTGCCCAT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1222:230717..231208-

>mRNA_A-nodosum_M_contig1222.18.1 ID=mRNA_A-nodosum_M_contig1222.18.1|Name=mRNA_A-nodosum_M_contig1222.18.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=492bp|location=Sequence derived from alignment at A-nodosum_M_contig1222:230717..231208- (Ascophyllum nodosum dioecious)
CGCGCCGAAATCGAAAGATTACACGATCGCACGTTGGTACAAAAATCCCT
GCAAGTATGGCAATCACTAACAAAAGCTGTAGAGAAGGAAACTGAAATCA
TGAAGATGGTATTAGAGATAGATTCCCCCTCAGAAGCATGGCGCGCACTA
TCGAAAATAGCGGACGAGACGGAAGACGTTGCGTACGATAGAGCGAAAAG
AGAATTTGAAACCCTGGAGATGGGAGTAAACGAGTCTGTAACCGAGTACT
TCGCTCGCGTAAACATCGTTCTGATGAAACTTGAAAGGCATAACATAATA
ATGCCCGCACGAGAGATCAAGCGCATTATACTGAACAGCTTGACCCCACG
TTTCCCAAATGAGACTTGTCTGTATGCAATAAGAGATGACTTCGAATTGA
AAGACCTGGAAAATGGGCTGGCTCGCGTGGAGAAGTTTCAGTCGGAACAG
AAGAGAAGGAGCGCCCCGTTCCACACGTTAGTCGTTGCCCAT
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