mRNA_A-nodosum_M_contig1221.11.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1221.11.1
Unique NamemRNA_A-nodosum_M_contig1221.11.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig1221.11.1 vs. uniprot
Match: A0A2A2G600_9BACT (Two component regulator three Y domain protein (Fragment) n=1 Tax=Aliifodinibius sp. WN023 TaxID=2032627 RepID=A0A2A2G600_9BACT)

HSP 1 Score: 74.3 bits (181), Expect = 1.540e-15
Identity = 31/58 (53.45%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:   25 VDSDREALMSLYRATGGEQWRNRTGWGTSAPLDEWYGVSVDERGRVTELELCQNSLLG 198
            V  DR+ALM LY ATGG+ W N +GWG+  P   W+GV VD  GRV  L+L +N L G
Sbjct:   28 VSGDRQALMDLYSATGGDSWANNSGWGSGDPSGSWHGVEVDANGRVVRLDLWKNGLQG 85
[Close]
BLAST of mRNA_A-nodosum_M_contig1221.11.1 vs. uniprot
Match: A0A6H5JWQ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWQ1_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 3.490e-15
Identity = 33/54 (61.11%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:   31 SDREALMSLYRATGGEQWRNRTGWGTSAPLDEWYGVSVDERGRVTELELCQNSL 192
            +DR ALM L+ AT G  W N+TGWGTSAPL +W+GV+VD  GRVT L+L  N L
Sbjct:  152 TDRSALMELFNATKGSSWTNKTGWGTSAPLQQWHGVTVDGAGRVTTLKLGWNKL 205
[Close]
BLAST of mRNA_A-nodosum_M_contig1221.11.1 vs. uniprot
Match: A0A6H5K720_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K720_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 9.010e-15
Identity = 33/58 (56.90%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:   25 VDSDREALMSLYRATGGEQWRNRTGWGTSAPLDEWYGVSVDERGRVTELELCQNSLLG 198
              +DR AL++L+ AT G  W+  T WGTSAPL EWYGV+VD+ GRV++LEL  N L G
Sbjct:  435 ASTDRAALLALFIATNGPSWKKGTAWGTSAPLGEWYGVTVDDDGRVSQLELGDNGLSG 492
[Close]
BLAST of mRNA_A-nodosum_M_contig1221.11.1 vs. uniprot
Match: A0A6H5K3D6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3D6_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 2.190e-14
Identity = 29/58 (50.00%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:   25 VDSDREALMSLYRATGGEQWRNRTGWGTSAPLDEWYGVSVDERGRVTELELCQNSLLG 198
            + +DR AL++L+ ATGG  W+  T W T APL +WYGV V++ GRV +L L  N+L G
Sbjct:    9 MSTDRAALVALFNATGGANWKKNTKWNTDAPLGQWYGVEVNDAGRVVKLSLRYNNLKG 66
[Close]
BLAST of mRNA_A-nodosum_M_contig1221.11.1 vs. uniprot
Match: A0A6L8DPF6_9BACT (Uncharacterized protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A6L8DPF6_9BACT)

HSP 1 Score: 75.5 bits (184), Expect = 2.310e-14
Identity = 35/57 (61.40%), Postives = 39/57 (68.42%), Query Frame = 1 
Query:   28 DSDREALMSLYRATGGEQWRNRTGWGTSAPLDEWYGVSVDERGRVTELELCQNSLLG 198
            D DREAL+ LY ATGG  WRN   W T APL EWYGV+ DE GRV  L L +N+L G
Sbjct:  373 DPDREALVMLYNATGGPDWRNSYNWLTEAPLGEWYGVTTDEDGRVDGLVLTENNLDG 429
[Close]
BLAST of mRNA_A-nodosum_M_contig1221.11.1 vs. uniprot
Match: D8LD84_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD84_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 2.310e-14
Identity = 32/58 (55.17%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:   25 VDSDREALMSLYRATGGEQWRNRTGWGTSAPLDEWYGVSVDERGRVTELELCQNSLLG 198
              +DR AL++L+ AT G  W   T WGT+APL EWYGV+VD+ GRV++LEL +N L G
Sbjct:  547 ASTDRAALLALFIATNGPSWTTSTAWGTAAPLGEWYGVTVDDDGRVSQLELRENGLSG 604
[Close]
BLAST of mRNA_A-nodosum_M_contig1221.11.1 vs. uniprot
Match: A0A1M4SQB1_9BACT (Uncharacterized protein n=2 Tax=Aliifodinibius roseus TaxID=1194090 RepID=A0A1M4SQB1_9BACT)

HSP 1 Score: 75.1 bits (183), Expect = 3.040e-14
Identity = 32/59 (54.24%), Postives = 39/59 (66.10%), Query Frame = 1 
Query:   22 GVDSDREALMSLYRATGGEQWRNRTGWGTSAPLDEWYGVSVDERGRVTELELCQNSLLG 198
            G  SDR ALM LY ATGG++W+N +GWG   P + W+GV V+  GRV  LEL  N L G
Sbjct:   30 GTSSDRRALMDLYEATGGDRWKNNSGWGNGDPSNAWHGVEVNAEGRVVRLELFGNGLNG 88
[Close]
BLAST of mRNA_A-nodosum_M_contig1221.11.1 vs. uniprot
Match: A0A6L7QJ86_9BACT (Alpha/beta fold hydrolase n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A6L7QJ86_9BACT)

HSP 1 Score: 74.7 bits (182), Expect = 4.320e-14
Identity = 32/59 (54.24%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:   25 VDSDREALMSLYRATGGEQWRNRTGWGTS-APLDEWYGVSVDERGRVTELELCQNSLLG 198
            V+ DR  L++LY ATGG+ W+N T W  S +PLD+WYGV+ D+ GRVT L L  N L+G
Sbjct:  236 VEQDRAVLIALYEATGGDNWKNNTNWLISTSPLDQWYGVTTDDGGRVTSLYLADNQLIG 294
[Close]
BLAST of mRNA_A-nodosum_M_contig1221.11.1 vs. uniprot
Match: A0A521B3C5_9BACT (Uncharacterized protein n=2 Tax=Aliifodinibius sediminis TaxID=1214077 RepID=A0A521B3C5_9BACT)

HSP 1 Score: 73.9 bits (180), Expect = 8.120e-14
Identity = 30/64 (46.88%), Postives = 39/64 (60.94%), Query Frame = 1 
Query:    7 GIAAAGVDSDREALMSLYRATGGEQWRNRTGWGTSAPLDEWYGVSVDERGRVTELELCQNSLLG 198
            G  +  V  DR+AL+ LY ATGG+ W N +GWG+  P D WYG+  D  GRV  ++L  N L G
Sbjct:  526 GSTSGSVAGDRQALLDLYEATGGDHWHNNSGWGSGDPSDGWYGIETDANGRVVRVDLFDNGLSG 589
[Close]
BLAST of mRNA_A-nodosum_M_contig1221.11.1 vs. uniprot
Match: A0A6H5JK91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK91_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 9.970e-14
Identity = 30/58 (51.72%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:   25 VDSDREALMSLYRATGGEQWRNRTGWGTSAPLDEWYGVSVDERGRVTELELCQNSLLG 198
              +DR+AL++LYRATGGE WR    W T A L  W+GV V+++GRV +L+L  N+L G
Sbjct:    2 AQTDRDALVALYRATGGENWRESQNWDTDADLKTWHGVDVNDQGRVVKLKLRDNNLEG 59
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1221.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2A2G600_9BACT1.540e-1553.45Two component regulator three Y domain protein (Fr... [more]
A0A6H5JWQ1_9PHAE3.490e-1561.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K720_9PHAE9.010e-1556.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3D6_9PHAE2.190e-1450.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6L8DPF6_9BACT2.310e-1461.40Uncharacterized protein n=1 Tax=Gemmatimonadetes b... [more]
D8LD84_ECTSI2.310e-1455.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1M4SQB1_9BACT3.040e-1454.24Uncharacterized protein n=2 Tax=Aliifodinibius ros... [more]
A0A6L7QJ86_9BACT4.320e-1454.24Alpha/beta fold hydrolase n=1 Tax=Gemmatimonadetes... [more]
A0A521B3C5_9BACT8.120e-1446.88Uncharacterized protein n=2 Tax=Aliifodinibius sed... [more]
A0A6H5JK91_9PHAE9.970e-1451.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1221contigA-nodosum_M_contig1221:181308..181508 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LBY3
PFAMsLRRNT_2,LRR_1,LRR_6,LRR_8,XK-related
Model size201
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.34e-14
EggNOG OGsCOG4886@1|root,2R960@2759|Eukaryota
Descriptionregulation of response to stimulus
Cds size201
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866650.8098705-CDS-A-nodosum_M_contig1221:181307..1815081680866650.8098705-CDS-A-nodosum_M_contig1221:181307..181508Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1221 181308..181508 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1221.11.1prot_A-nodosum_M_contig1221.11.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1221 181308..181508 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1221.11.1

>prot_A-nodosum_M_contig1221.11.1 ID=prot_A-nodosum_M_contig1221.11.1|Name=mRNA_A-nodosum_M_contig1221.11.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=67bp
GEGIAAAGVDSDREALMSLYRATGGEQWRNRTGWGTSAPLDEWYGVSVDE
RGRVTELELCQNSLLGT
back to top

mRNA from alignment at A-nodosum_M_contig1221:181308..181508-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1221.11.1 ID=mRNA_A-nodosum_M_contig1221.11.1|Name=mRNA_A-nodosum_M_contig1221.11.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=201bp|location=Sequence derived from alignment at A-nodosum_M_contig1221:181308..181508- (Ascophyllum nodosum dioecious)
GGGGAGGGCATCGCTGCCGCGGGGGTGGACTCGGACCGTGAGGCACTCAT
GTCGCTGTACCGGGCAACCGGAGGGGAACAGTGGAGAAACCGGACCGGGT
GGGGTACTAGCGCTCCACTGGACGAATGGTATGGCGTCAGCGTGGATGAA
AGGGGTCGGGTCACGGAGTTGGAGCTGTGCCAGAACAGCTTGCTCGGTAC
G
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig1221:181308..181508-

>mRNA_A-nodosum_M_contig1221.11.1 ID=mRNA_A-nodosum_M_contig1221.11.1|Name=mRNA_A-nodosum_M_contig1221.11.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=201bp|location=Sequence derived from alignment at A-nodosum_M_contig1221:181308..181508- (Ascophyllum nodosum dioecious)
GGGGAGGGCATCGCTGCCGCGGGGGTGGACTCGGACCGTGAGGCACTCAT
GTCGCTGTACCGGGCAACCGGAGGGGAACAGTGGAGAAACCGGACCGGGT
GGGGTACTAGCGCTCCACTGGACGAATGGTATGGCGTCAGCGTGGATGAA
AGGGGTCGGGTCACGGAGTTGGAGCTGTGCCAGAACAGCTTGCTCGGTAC
G
back to top