mRNA_A-nodosum_M_contig1221.10.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1221.10.1
Unique NamemRNA_A-nodosum_M_contig1221.10.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1221.10.1 vs. uniprot
Match: A0A6H5JV56_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV56_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 3.140e-9
Identity = 33/85 (38.82%), Postives = 45/85 (52.94%), Query Frame = 1 
Query:   10 NPWHRRLGHCNGNVIRRIINKADSGVKFFYSLLDCGTCMIRKSFQMAHLKNSNHGWVTEPLQVVNTDLTRPLSPTALENKSYMAK 264
            N WH+ LGH +  V+ ++     S V    S   C TC + K  Q  H K      +T+PLQVV+TDL  P+S  AL   SY++K
Sbjct:  172 NIWHKGLGHPSVQVLEKLARADGSEVHLHDSFSACDTCHVNKCVQNNHPKTVISDNITQPLQVVSTDLIGPISLPALGGYSYISK 256
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BLAST of mRNA_A-nodosum_M_contig1221.10.1 vs. uniprot
Match: A0A0P1AQ44_PLAHL (FOG: Transposon-encoded proteins with TYA, reverse transcriptase, integrase domains in various combinations n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AQ44_PLAHL)

HSP 1 Score: 49.3 bits (116), Expect = 8.720e-5
Identity = 28/84 (33.33%), Postives = 43/84 (51.19%), Query Frame = 1 
Query:   16 WHRRLGHCNGNVIRRIINKADS---GVKFFYSLLDCGTCMIRKSFQMAHLKNSNHGWVTEPLQVVNTDLTRPLSPTALENKSYM 258
            WH RLGH +    +R+++ +D    G++       CG CM+     M   K +N G  T  LQ+V+TDL RP+  T+     Y+
Sbjct:  140 WHARLGHTHHENTKRVVDASDGIPGGLQRGRCQDLCGGCMLGTKTVMQFPKQTNRG-TTRVLQLVHTDLMRPMKVTSTGGAKYV 222
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1221.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JV56_9PHAE3.140e-938.82Integrase catalytic domain-containing protein n=1 ... [more]
A0A0P1AQ44_PLAHL8.720e-533.33FOG: Transposon-encoded proteins with TYA, reverse... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1221contigA-nodosum_M_contig1221:151037..151303 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog8128.ENSONIP00000026676
PFAMsDUF4219,RVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size267
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.0001
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BI7U@33208|Metazoa,3CTS1@33213|Bilateria,48JS3@7711|Chordata,49GTT@7742|Vertebrata
DescriptionPfam:UBN2_2
Cds size267
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866650.7778208-CDS-A-nodosum_M_contig1221:151036..1513031680866650.7778208-CDS-A-nodosum_M_contig1221:151036..151303Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1221 151037..151303 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1221.10.1prot_A-nodosum_M_contig1221.10.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1221 151037..151303 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1221.10.1

>prot_A-nodosum_M_contig1221.10.1 ID=prot_A-nodosum_M_contig1221.10.1|Name=mRNA_A-nodosum_M_contig1221.10.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=89bp
MSINPWHRRLGHCNGNVIRRIINKADSGVKFFYSLLDCGTCMIRKSFQMA
HLKNSNHGWVTEPLQVVNTDLTRPLSPTALENKSYMAK*
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mRNA from alignment at A-nodosum_M_contig1221:151037..151303+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1221.10.1 ID=mRNA_A-nodosum_M_contig1221.10.1|Name=mRNA_A-nodosum_M_contig1221.10.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=267bp|location=Sequence derived from alignment at A-nodosum_M_contig1221:151037..151303+ (Ascophyllum nodosum dioecious)
ATGAGTATCAACCCATGGCATCGTAGACTAGGACATTGTAACGGAAACGT
AATACGTAGAATTATAAACAAAGCGGACTCGGGTGTAAAGTTTTTTTATT
CACTACTAGATTGCGGTACATGTATGATTAGGAAAAGTTTTCAGATGGCA
CACCTAAAAAATTCAAACCATGGCTGGGTTACCGAGCCCCTGCAAGTCGT
AAACACTGATTTAACGAGGCCTTTGTCACCGACTGCATTGGAAAACAAGA
GCTATATGGCAAAGTAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1221:151037..151303+

>mRNA_A-nodosum_M_contig1221.10.1 ID=mRNA_A-nodosum_M_contig1221.10.1|Name=mRNA_A-nodosum_M_contig1221.10.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=267bp|location=Sequence derived from alignment at A-nodosum_M_contig1221:151037..151303+ (Ascophyllum nodosum dioecious)
ATGAGTATCAACCCATGGCATCGTAGACTAGGACATTGTAACGGAAACGT
AATACGTAGAATTATAAACAAAGCGGACTCGGGTGTAAAGTTTTTTTATT
CACTACTAGATTGCGGTACATGTATGATTAGGAAAAGTTTTCAGATGGCA
CACCTAAAAAATTCAAACCATGGCTGGGTTACCGAGCCCCTGCAAGTCGT
AAACACTGATTTAACGAGGCCTTTGTCACCGACTGCATTGGAAAACAAGA
GCTATATGGCAAAGTAA
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