mRNA_A-nodosum_M_contig1220.6.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1220.6.1
Unique NamemRNA_A-nodosum_M_contig1220.6.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1220.6.1 vs. uniprot
Match: A0A6P0N5L4_9CYAN (Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0N5L4_9CYAN)

HSP 1 Score: 396 bits (1018), Expect = 3.920e-121
Identity = 198/396 (50.00%), Postives = 273/396 (68.94%), Query Frame = 1
Query:    1 MENLFEEATVKAVIKKANPQSAAGPSGLRYSHLQAALCDELVEDLAAFATLVFSSRVLPQVFWTLHTSANLSALGQKARPVACGDVLRRVIGAVFCRRYGRKLADYFQPWGQYGVAVSGGVEIMALTATLGFEEGCTILSYDGANAFNSIYRHRFLPALAEIVPSVVPYASNLYAREPPKLLFALDGGGSEVVESARGVQQGCNLGPLCYSAGSLKILKEFRANPPVPGARAVSFIDDITVILPPERSLDVAAIGKVTEWLQERLGIEGISLNRRKSQALLADGVGPEQLTEEQRVAMDTTGLTVVRQGMRVVGVPVGTEQFQRDFLKEAVNGEPAELVRALAPMEDAQASFQILRLSATSRLSHLLRTVPPSITGQAAANYDALVEWALASIIAG 1188
            +E  F   TV A I++ NPQ + GPSGLR+S LQ++L  EL E +A   +++F    LP  FW LHTSANLSA+G K RP+A GD+ RR++G V CR+YG  LA++F+P GQYGVAV GG E++A  A L  ++G  +L+YD  NAFNS+ R   LPALA+++P ++PYA+N+YAREPPKLL+  D G   V+ SA GVQQGCNLGPLCYSAG LK+L++FRANPPV GA+ ++FIDD+ V+LP   + + AA   VT W+Q  +   G++LNR KS+ L   G   +   E+ R  ++ T L V   GMR+VGVPVG   + +    +   GEP +L++ +A ++DAQAS QILR SA +RL+ LLR++PP +T +AA+ +D  VE  L +I+ G
Sbjct: 1154 VEEPFATETVTATIRRGNPQGSPGPSGLRFSLLQSSLTPELCEAIAKLCSVIFDGSHLPDSFWQLHTSANLSAIGDKCRPIAVGDLFRRIVGGVICRQYGPSLAEHFEPQGQYGVAVPGGTELLAARAFLAHQKGQCLLAYDARNAFNSMKRSAILPALADLIPPMLPYATNIYAREPPKLLYKTDSG-MAVIPSATGVQQGCNLGPLCYSAGLLKLLRDFRANPPVVGAQLMAFIDDLVVLLPKNHACNPAAAEAVTTWIQANMQPLGVALNRSKSKILFPPGTDVKSWPEKDRETLERTQLAVAEGGMRIVGVPVGEPDYIKRSALDIARGEPTDLLKEIASLDDAQASLQILRFSAATRLNFLLRSLPPDLTKEAASEFDKSVEQTLETILNG 1548          
BLAST of mRNA_A-nodosum_M_contig1220.6.1 vs. uniprot
Match: A0A6H5KGJ4_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ4_9PHAE)

HSP 1 Score: 370 bits (951), Expect = 4.200e-120
Identity = 198/394 (50.25%), Postives = 259/394 (65.74%), Query Frame = 1
Query:   13 FEEATVKAVIKKANPQSAAGPSGLRYSHLQAA-LCDELVEDLAAFATLVFS-SRVLPQVFWTLHTSANLSALGQKARPVACGDVLRRVIGAVFCRRYGRKLADYFQPWGQYGVAVSGGVEIMALTATLGFEEGCTILSYDGANAFNSIYRHRFLPALAEIVPSVVPYASNLYAREPPKLLFALDGGGSEVVESARGVQQGCNLGPLCYSAGSLKILKEFRANPPVPGARAVSFIDDITVILPPERSLDVAAIGKVTEWLQERLGIEGISLNRRKSQALLADGVGPEQLTEEQRVAMDTTGLTVVRQGMRVVGVPVGTEQFQRDFLKEAVNGEPAELVRALAPMEDAQASFQILRLSATSRLSHLLRTVPPSITGQAAANYDALVEWALASIIAG 1188
            FE   +K  +KKANPQSA GP GLR+S+LQA  + D   E LA F+  VF     LP  FW LHTSANLSALG+K RP+A G VLRR+I   FC +Y   +A+ F+   Q+G  V GGVEI+A TA L  ++G TILS+DG NA+NS+ R   LPA+A   P +V Y  N+YAR   KLLF ++ G  EVV S RGVQQGCNLG   +  G L I+KEF   PPVPGA+ + ++DD+ V LPP  + ++ AI  VT W+Q+ L  +GI L+  KS+ L  +G+    LT +++  +  TGL+V   GM +VGVPVGTE FQR F+     G PAEL+R L+ ++D QAS+Q+LRLS   RL HLLRT+ PSIT  AA  +D L+ WA++ I+ G
Sbjct:  120 FEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCHQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGAKLIGYVDDLQVHLPPGLARNIQAIATVTNWIQDHLLQKGIELSLPKSKVLFPEGLFFSSLTNDEQRDLTKTGLSVAEGGMAIVGVPVGTECFQRSFVTNFARGNPAELIRRLSTLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNTAAREHDNLMIWAVSKIVLG 513          
BLAST of mRNA_A-nodosum_M_contig1220.6.1 vs. uniprot
Match: A0A6H5JCM0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM0_9PHAE)

HSP 1 Score: 374 bits (960), Expect = 7.570e-119
Identity = 197/394 (50.00%), Postives = 261/394 (66.24%), Query Frame = 1
Query:   13 FEEATVKAVIKKANPQSAAGPSGLRYSHLQAA-LCDELVEDLAAFATLVFS-SRVLPQVFWTLHTSANLSALGQKARPVACGDVLRRVIGAVFCRRYGRKLADYFQPWGQYGVAVSGGVEIMALTATLGFEEGCTILSYDGANAFNSIYRHRFLPALAEIVPSVVPYASNLYAREPPKLLFALDGGGSEVVESARGVQQGCNLGPLCYSAGSLKILKEFRANPPVPGARAVSFIDDITVILPPERSLDVAAIGKVTEWLQERLGIEGISLNRRKSQALLADGVGPEQLTEEQRVAMDTTGLTVVRQGMRVVGVPVGTEQFQRDFLKEAVNGEPAELVRALAPMEDAQASFQILRLSATSRLSHLLRTVPPSITGQAAANYDALVEWALASIIAG 1188
            FE   +K  +KKANPQSA GP GLR+S+LQA  + D   E LA F+  VF     LP  FW LHTSANLSALG+K RP+A G VLRR+I   FCR+Y   +A+ F+   Q+G  V GGVEI+A TA L  ++G TILS+DG NA+NS+ R   LPA+A   P +V Y  N+YAR   KLLF ++ G  EVV S RGVQQGCNLG   +  G L I+KEF   PPVPG + + ++DD+   LPP  + ++ AI  VT W+QERL  +GI L+  KS+ L  +G+    LT +++  +   GL+V   GM VVG+PVGTE+FQR+F+ +   G+PAEL+  LA ++D QAS+Q+LRLS   RL HLLRT+ PSIT  AA  +D ++ WA++ I+ G
Sbjct:  120 FEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGVKLIGYVDDLQAHLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVTEGGMPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNSAAKIHDNMMMWAMSKIVLG 513          
BLAST of mRNA_A-nodosum_M_contig1220.6.1 vs. uniprot
Match: A0A6H5LN63_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN63_9PHAE)

HSP 1 Score: 375 bits (963), Expect = 3.920e-117
Identity = 197/394 (50.00%), Postives = 261/394 (66.24%), Query Frame = 1
Query:   13 FEEATVKAVIKKANPQSAAGPSGLRYSHLQAA-LCDELVEDLAAFATLVFS-SRVLPQVFWTLHTSANLSALGQKARPVACGDVLRRVIGAVFCRRYGRKLADYFQPWGQYGVAVSGGVEIMALTATLGFEEGCTILSYDGANAFNSIYRHRFLPALAEIVPSVVPYASNLYAREPPKLLFALDGGGSEVVESARGVQQGCNLGPLCYSAGSLKILKEFRANPPVPGARAVSFIDDITVILPPERSLDVAAIGKVTEWLQERLGIEGISLNRRKSQALLADGVGPEQLTEEQRVAMDTTGLTVVRQGMRVVGVPVGTEQFQRDFLKEAVNGEPAELVRALAPMEDAQASFQILRLSATSRLSHLLRTVPPSITGQAAANYDALVEWALASIIAG 1188
            FE   +K  +KKANPQSA GP GLR+S+LQA  + D   E LA F+  VF     LP  FW LHTSANLSALG+K RP+A G VLRR+I   FCR+Y   +A+ F+   Q+G  V GGVEI+A TA L  ++G TILS+DG NA+NS+ R   LPA+A   P +V Y  N+YAR   KLLF ++ G  EVV S RGVQQGCNLG   +  G L I+KEF   PPVPG + + ++DD+   LPP  + ++ AI  VT W+QERL  +GI L+  KS+ L  +G+    LT +++  +   GL+V   GM VVG+PVGTE+FQR+F+ +   G+PAEL+  LA ++D QAS+Q+LRLS   RL HLLRT+ PSIT  AA  +D ++ WA++ I+ G
Sbjct:  120 FEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDSFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGVKLIGYVDDLQAHLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVAEGGMPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNSAAKIHDNMMMWAMSKIVLG 513          
BLAST of mRNA_A-nodosum_M_contig1220.6.1 vs. uniprot
Match: A0A6H5KSY9_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSY9_9PHAE)

HSP 1 Score: 331 bits (848), Expect = 3.470e-106
Identity = 175/361 (48.48%), Postives = 233/361 (64.54%), Query Frame = 1
Query:  109 LCDELVEDLAAFATLVFS-SRVLPQVFWTLHTSANLSALGQKARPVACGDVLRRVIGAVFCRRYGRKLADYFQPWGQYGVAVSGGVEIMALTATLGFEEGCTILSYDGANAFNSIYRHRFLPALAEIVPSVVPYASNLYAREPPKLLFALDGGGSEVVESARGVQQGCNLGPLCYSAGSLKILKEFRANPPVPGARAVSFIDDITVILPPERSLDVAAIGKVTEWLQERLGIEGISLNRRKSQALLADGVGPEQLTEEQRVAMDTTGLTVVRQGMRVVGVPVGTEQFQRDFLKEAVNGEPAELVRALAPMEDAQASFQILRLSATSRLSHLLRTVPPSITGQAAANYDALVEWALASIIAG 1188
            + D   E LA F+  VF     LP  FW LHTSANLSALG+K RP+A G VLRR+I   FCR+Y   +A+ F+   Q+G  V GGVEI+A TA L  ++G TILS+DG NA+NS+ R   LPA+A   P +  Y  N+YAR   KLLF ++ G  EVV S RGVQQGCNLG   +  G L I+KEF   PPVPGA+ + ++DD+ V LPP  + ++ AI  VT W+Q+ L  +GI L+  KS  L  +G+    LT +++  +  TGL+V   GM +VGVPVGTE FQR F+     G PAEL+  L+ ++D Q S+Q+LR+S   RL HLLRT+ PSIT  AA  +D+L+ WA++ I+ G
Sbjct:    1 MSDYFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLAKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGAKLIGYVDDLQVHLPPGLARNIQAIATVTNWIQDHLLQKGIELSLPKSNVLFPEGLFFSSLTNDEQRDLTKTGLSVAEGGMAIVGVPVGTECFQRSFVTNFARGIPAELIPRLSTLDDPQTSYQLLRMSGVPRLFHLLRTIAPSITNTAAREHDSLMIWAVSKIVLG 361          
BLAST of mRNA_A-nodosum_M_contig1220.6.1 vs. uniprot
Match: A0A6H5K1H0_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H0_9PHAE)

HSP 1 Score: 335 bits (860), Expect = 1.580e-101
Identity = 175/361 (48.48%), Postives = 236/361 (65.37%), Query Frame = 1
Query:  109 LCDELVEDLAAFATLVFS-SRVLPQVFWTLHTSANLSALGQKARPVACGDVLRRVIGAVFCRRYGRKLADYFQPWGQYGVAVSGGVEIMALTATLGFEEGCTILSYDGANAFNSIYRHRFLPALAEIVPSVVPYASNLYAREPPKLLFALDGGGSEVVESARGVQQGCNLGPLCYSAGSLKILKEFRANPPVPGARAVSFIDDITVILPPERSLDVAAIGKVTEWLQERLGIEGISLNRRKSQALLADGVGPEQLTEEQRVAMDTTGLTVVRQGMRVVGVPVGTEQFQRDFLKEAVNGEPAELVRALAPMEDAQASFQILRLSATSRLSHLLRTVPPSITGQAAANYDALVEWALASIIAG 1188
            + D   E LA F+  VF     LP   W LHTSANLSALG+K RP+A G VLRR+I   F R+Y   +A+ F+   Q+G  V GGVEI+A TA L  ++G TILS+DG NA+NS+ R   LPA+A + P +V Y  N+YAR   KLLF ++ G  EVV S RGVQQGCNLG   +  G L I+KEF   PPVPG + + ++DD+   LPP  + ++ AI  VT W+QERL  +GI L+  KS+ L  +G+    LT +++  +   GL+V   GM VVG+PVGTE+FQR+F+ +   G+PAEL+  LA ++D QAS+Q+LRLS   RL HLLRT+ PSIT  AA  +D ++ WA++ I+ G
Sbjct:    1 MSDSFTETLADFSFKVFYYGDELPDFLWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFYRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATLTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGVKLIGYVDDLQAHLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVAEGGMPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNSAAKIHDNMMMWAMSKIVLG 361          
BLAST of mRNA_A-nodosum_M_contig1220.6.1 vs. uniprot
Match: A0A6H5KQ62_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ62_9PHAE)

HSP 1 Score: 267 bits (682), Expect = 1.320e-82
Identity = 143/278 (51.44%), Postives = 182/278 (65.47%), Query Frame = 1
Query:   13 FEEATVKAVIKKANPQSAAGPSGLRYSHLQAA-LCDELVEDLAAFATLVFS-SRVLPQVFWTLHTSANLSALGQKARPVACGDVLRRVIGAVFCRRYGRKLADYFQPWGQYGVAVSGGVEIMALTATLGFEEGCTILSYDGANAFNSIYRHRFLPALAEIVPSVVPYASNLYAREPPKLLFALDGGGSEVVESARGVQQGCNLGPLCYSAGSLKILKEFRANPPVPGARAVSFIDDITVILPPERSLDVAAIGKVTEWLQERLGIEGISLNRRKSQAL 840
            FE   +K  +KKANPQSA GP GLR+S+LQA  + D   E LA F+  VF     LP  FW LHTSANLSALG+K RP+A G VLRR+I   FCR+Y   +A+ F+   Q+G  V GGVEI+A TA L  ++G TILS+DG NA+NS+ R   LPA+A   P +V Y  N+YAR   KLLF ++ G  EVV S RGVQQGCNLG   +  G L I+KEF   PPVPG + + ++DD+   LPP  + ++ AI  VT W+QERL  +GI L+  KS+ L
Sbjct:  120 FEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGVKLIGYVDDLQAHLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVL 397          
BLAST of mRNA_A-nodosum_M_contig1220.6.1 vs. uniprot
Match: A0A6H5K541_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K541_9PHAE)

HSP 1 Score: 197 bits (501), Expect = 4.800e-57
Identity = 101/212 (47.64%), Postives = 139/212 (65.57%), Query Frame = 1
Query:  553 LDGGGSEVVESARGVQQGCNLGPLCYSAGSLKILKEFRANPPVPGARAVSFIDDITVILPPERSLDVAAIGKVTEWLQERLGIEGISLNRRKSQALLADGVGPEQLTEEQRVAMDTTGLTVVRQGMRVVGVPVGTEQFQRDFLKEAVNGEPAELVRALAPMEDAQASFQILRLSATSRLSHLLRTVPPSITGQAAANYDALVEWALASIIAG 1188
            ++ G  E+V S RGVQQGCNLG   +S G L  +KEF   PPVPGA+ + ++DD+ V LPP  + ++ AI  VT W+Q+ L  +GI L+  KS+ L  +G     LT +++  +  TGL+V   GM +VGVPVGTE FQR F+     G PAEL+R L+ ++D QAS+Q+LRLS   RL HLLRT+ PSIT  AA  +D L+ WA++ I+ G
Sbjct:    1 MEDGSIEIVRSQRGVQQGCNLGGFGFSVGLLDTMKEFNDKPPVPGAKLIGYVDDLQVHLPPGLARNIQAIATVTNWIQDHLLQKGIELSLPKSKVLFPEGFFFSSLTNDEQRDLTKTGLSVAEGGMAIVGVPVGTECFQRSFVTNFARGNPAELIRRLSTLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNTAAREHDNLMIWAVSKIVLG 212          
BLAST of mRNA_A-nodosum_M_contig1220.6.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 195 bits (495), Expect = 3.370e-51
Identity = 133/396 (33.59%), Postives = 207/396 (52.27%), Query Frame = 1
Query:    4 ENLFEEATVKAVIKKANPQSAAGPSGLRYSHLQAALCDELV-EDLAA-----FATLVFSSRVLPQVFWTLHTSANLSALGQKARPVACGDVLRRVIGAVFCRRYGRKLADYFQPWGQYGVAVSGGVEIMALTATLGFEEGCTILSYDGANAFNSIYRHRFLPALAEIVPSVVPYASNLYAREPPKLLFALDGGGSEVVESARGVQQGCNLGPLCYSAGSLKILKEFRANPPVPGARAVSFIDDITVILPPERSLDVAAIGKVTEWLQERLGIEGISLNRRKSQALLADGVGPEQLTEEQRVAMDTTGLTVVRQGMRVVGVPVGTEQFQRDF-LKEAVNGEPAELVRALAPMEDAQASFQILRLSATSRLSHLLRTVPPSITGQAAANYDALVEWAL 1170
            E  F+   +  VI   +  S AG  G R+SHL++    ++  ED        +  LV      P  FWTL   ++L ALG+K RPV  G   RR+I A   R++  KL + F+   Q+GVAV+GGVE +A+ A L  + G  I+  D +NAFN+  R   +   A+ +P +V Y +  Y   P   ++ +D G    +E   GVQQG  +GP  +S   + I+ + +      G    +++DDIT+ L   + L   ++  +T+ + E L   GI +NR KS AL   G     +T++QR  ++  GLTV  +G+ VVGVP+GT+ + R+F +K    G   +L R L  M D Q +  I  LS   R +++ R + P++T +A    D +V+WAL
Sbjct:  535 EEEFDPQVLIEVINSRSSNSGAGNDGQRFSHLKSITNTKIGREDFCGAMSSLWRRLVNDPNTFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVRQWKPKLEEMFREANQFGVAVAGGVERVAMEAQLVHQTGNWIIQTDCSNAFNTGKRTAIMAQAAKSLPDLVGYIARCYDEIPATAVYEMDSGERRTLECTSGVQQGDGMGPPLFSLILIPIILKLQDKYKPLGVAFKAYMDDITLHL---KDLTEESVQAMTDLVDE-LAEVGIVVNRAKSSALPPPG---HMITDQQRRLLEGVGLTVAGEGITVVGVPIGTDNYVREFAMKVITEGGAEKLARMLPLMSDRQVANLITSLSLIQRSAYIERGIDPTLTKEACERLDNMVQWAL 923          
BLAST of mRNA_A-nodosum_M_contig1220.6.1 vs. uniprot
Match: A0A6H5JLD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLD7_9PHAE)

HSP 1 Score: 166 bits (421), Expect = 6.100e-45
Identity = 81/179 (45.25%), Postives = 119/179 (66.48%), Query Frame = 1
Query:  652 LKEFRANPPVPGARAVSFIDDITVILPPERSLDVAAIGKVTEWLQERLGIEGISLNRRKSQALLADGVGPEQLTEEQRVAMDTTGLTVVRQGMRVVGVPVGTEQFQRDFLKEAVNGEPAELVRALAPMEDAQASFQILRLSATSRLSHLLRTVPPSITGQAAANYDALVEWALASIIAG 1188
            +KEF   PPVPG + + ++DD+   LPP  + ++ AI  VT W+QERL  +GI L+  KS+ L  +G+    LT +++  +   GL+V   GM VVG+P GTE+FQR+F+ +   G+PAEL+  LA ++D QAS+Q+LRLS   RL HLLRT+ PSIT  AA  +D ++ WA++ I+ G
Sbjct:    1 MKEFNNKPPVPGVKLIGYVDDLQAHLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVAEGGMPVVGIPAGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNSAAKIHDNMMMWAMSKIVLG 179          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1220.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6P0N5L4_9CYAN3.920e-12150.00Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 Ta... [more]
A0A6H5KGJ4_9PHAE4.200e-12050.25Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JCM0_9PHAE7.570e-11950.00Reverse transcriptase domain-containing protein (F... [more]
A0A6H5LN63_9PHAE3.920e-11750.00Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KSY9_9PHAE3.470e-10648.48Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K1H0_9PHAE1.580e-10148.48Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KQ62_9PHAE1.320e-8251.44Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K541_9PHAE4.800e-5747.64Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JH58_9PHAE3.370e-5133.59Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JLD7_9PHAE6.100e-4545.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1220contigA-nodosum_M_contig1220:124932..126119 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog400682.PAC_15702057
PFAMsRVT_1,zf-RVT
Model size1188
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.81e-18
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota
DescriptionRibonuclease H protein
Cds size1188
COG categoryE
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866649.3983872-CDS-A-nodosum_M_contig1220:124931..1261191680866649.3983872-CDS-A-nodosum_M_contig1220:124931..126119Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1220 124932..126119 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1220.6.1prot_A-nodosum_M_contig1220.6.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1220 124932..126119 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1220.6.1

>prot_A-nodosum_M_contig1220.6.1 ID=prot_A-nodosum_M_contig1220.6.1|Name=mRNA_A-nodosum_M_contig1220.6.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=396bp
MENLFEEATVKAVIKKANPQSAAGPSGLRYSHLQAALCDELVEDLAAFAT
LVFSSRVLPQVFWTLHTSANLSALGQKARPVACGDVLRRVIGAVFCRRYG
RKLADYFQPWGQYGVAVSGGVEIMALTATLGFEEGCTILSYDGANAFNSI
YRHRFLPALAEIVPSVVPYASNLYAREPPKLLFALDGGGSEVVESARGVQ
QGCNLGPLCYSAGSLKILKEFRANPPVPGARAVSFIDDITVILPPERSLD
VAAIGKVTEWLQERLGIEGISLNRRKSQALLADGVGPEQLTEEQRVAMDT
TGLTVVRQGMRVVGVPVGTEQFQRDFLKEAVNGEPAELVRALAPMEDAQA
SFQILRLSATSRLSHLLRTVPPSITGQAAANYDALVEWALASIIAG
back to top

mRNA from alignment at A-nodosum_M_contig1220:124932..126119+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1220.6.1 ID=mRNA_A-nodosum_M_contig1220.6.1|Name=mRNA_A-nodosum_M_contig1220.6.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1188bp|location=Sequence derived from alignment at A-nodosum_M_contig1220:124932..126119+ (Ascophyllum nodosum dioecious)
ATGGAGAACCTCTTCGAGGAGGCTACGGTAAAAGCTGTAATCAAGAAAGC CAACCCACAAAGCGCGGCAGGTCCGTCTGGACTACGCTACAGTCATCTGC AGGCTGCGCTGTGCGATGAACTGGTTGAGGATCTCGCGGCGTTCGCGACG CTTGTTTTTTCCAGCCGTGTCTTGCCTCAAGTGTTCTGGACACTGCACAC GAGCGCTAACCTTTCCGCGTTGGGGCAAAAGGCGAGACCAGTGGCGTGCG GCGATGTATTGCGGAGAGTAATTGGCGCTGTTTTCTGCCGCCGATACGGC AGGAAGCTGGCAGACTACTTCCAGCCCTGGGGCCAGTACGGCGTAGCAGT TTCAGGCGGAGTAGAGATAATGGCGCTCACTGCAACACTGGGTTTCGAAG AGGGTTGTACCATTCTCTCATACGACGGAGCAAACGCCTTCAACAGTATA TACCGCCACAGGTTCCTGCCCGCGCTAGCGGAAATCGTCCCCTCAGTGGT CCCCTACGCATCAAACCTGTACGCACGGGAACCCCCAAAACTCCTGTTTG CACTAGACGGTGGAGGTTCGGAAGTGGTCGAGTCAGCACGGGGAGTACAG CAAGGATGTAATCTAGGTCCACTTTGCTACAGCGCAGGCTCACTGAAGAT CCTAAAAGAATTTAGGGCCAACCCTCCGGTGCCAGGAGCGAGAGCGGTTT CGTTCATCGACGATATCACGGTCATTCTACCACCTGAACGTTCTCTCGAT GTGGCAGCTATAGGGAAAGTTACGGAATGGCTACAGGAGCGCCTGGGGAT AGAAGGTATCTCGCTGAACCGAAGGAAATCGCAGGCCCTGCTGGCAGATG GAGTGGGGCCAGAACAACTGACGGAAGAGCAGCGAGTGGCAATGGATACC ACAGGGCTCACGGTGGTCCGACAGGGGATGAGGGTTGTGGGAGTACCAGT TGGAACAGAACAGTTCCAGCGTGATTTCTTAAAGGAAGCGGTTAATGGAG AGCCAGCTGAGCTCGTGAGGGCGCTGGCCCCAATGGAGGATGCCCAAGCG AGCTTTCAGATTTTGCGTCTATCCGCCACTTCTCGCCTCTCACATCTGCT CCGAACAGTCCCGCCCTCCATCACAGGCCAAGCTGCAGCAAATTATGACG CTTTGGTGGAGTGGGCGCTGGCGTCTATCATAGCCGGT
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig1220:124932..126119+

>mRNA_A-nodosum_M_contig1220.6.1 ID=mRNA_A-nodosum_M_contig1220.6.1|Name=mRNA_A-nodosum_M_contig1220.6.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1188bp|location=Sequence derived from alignment at A-nodosum_M_contig1220:124932..126119+ (Ascophyllum nodosum dioecious)
ATGGAGAACCTCTTCGAGGAGGCTACGGTAAAAGCTGTAATCAAGAAAGC
CAACCCACAAAGCGCGGCAGGTCCGTCTGGACTACGCTACAGTCATCTGC
AGGCTGCGCTGTGCGATGAACTGGTTGAGGATCTCGCGGCGTTCGCGACG
CTTGTTTTTTCCAGCCGTGTCTTGCCTCAAGTGTTCTGGACACTGCACAC
GAGCGCTAACCTTTCCGCGTTGGGGCAAAAGGCGAGACCAGTGGCGTGCG
GCGATGTATTGCGGAGAGTAATTGGCGCTGTTTTCTGCCGCCGATACGGC
AGGAAGCTGGCAGACTACTTCCAGCCCTGGGGCCAGTACGGCGTAGCAGT
TTCAGGCGGAGTAGAGATAATGGCGCTCACTGCAACACTGGGTTTCGAAG
AGGGTTGTACCATTCTCTCATACGACGGAGCAAACGCCTTCAACAGTATA
TACCGCCACAGGTTCCTGCCCGCGCTAGCGGAAATCGTCCCCTCAGTGGT
CCCCTACGCATCAAACCTGTACGCACGGGAACCCCCAAAACTCCTGTTTG
CACTAGACGGTGGAGGTTCGGAAGTGGTCGAGTCAGCACGGGGAGTACAG
CAAGGATGTAATCTAGGTCCACTTTGCTACAGCGCAGGCTCACTGAAGAT
CCTAAAAGAATTTAGGGCCAACCCTCCGGTGCCAGGAGCGAGAGCGGTTT
CGTTCATCGACGATATCACGGTCATTCTACCACCTGAACGTTCTCTCGAT
GTGGCAGCTATAGGGAAAGTTACGGAATGGCTACAGGAGCGCCTGGGGAT
AGAAGGTATCTCGCTGAACCGAAGGAAATCGCAGGCCCTGCTGGCAGATG
GAGTGGGGCCAGAACAACTGACGGAAGAGCAGCGAGTGGCAATGGATACC
ACAGGGCTCACGGTGGTCCGACAGGGGATGAGGGTTGTGGGAGTACCAGT
TGGAACAGAACAGTTCCAGCGTGATTTCTTAAAGGAAGCGGTTAATGGAG
AGCCAGCTGAGCTCGTGAGGGCGCTGGCCCCAATGGAGGATGCCCAAGCG
AGCTTTCAGATTTTGCGTCTATCCGCCACTTCTCGCCTCTCACATCTGCT
CCGAACAGTCCCGCCCTCCATCACAGGCCAAGCTGCAGCAAATTATGACG
CTTTGGTGGAGTGGGCGCTGGCGTCTATCATAGCCGGT
back to top