mRNA_A-nodosum_M_contig1220.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1220.4.1
Unique NamemRNA_A-nodosum_M_contig1220.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1220.4.1 vs. uniprot
Match: A0A6H5KSF1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSF1_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 2.560e-15
Identity = 33/57 (57.89%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:    1 AVVDLGKSESIAGLTFVCLSRAKRLVDLLIEPIPLERLSKIGDTSTFQLRLRKEVRL 171
            AV+DLG  E+  GLTFVCLSRAKRLVDL++EP+  +R+  +G++ T + RL++EVRL
Sbjct:   39 AVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRL 95
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BLAST of mRNA_A-nodosum_M_contig1220.4.1 vs. uniprot
Match: A0A6H5K214_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K214_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 8.520e-15
Identity = 34/57 (59.65%), Postives = 47/57 (82.46%), Query Frame = 1 
Query:    1 AVVDLGKSESIAGLTFVCLSRAKRLVDLLIEPIPLERLSKIGDTSTFQLRLRKEVRL 171
            AV+DLG  E+  GLTFVCLSRAKRLVDL++EP+  +R+  +G++ST + RL++EVRL
Sbjct:   34 AVIDLGPKEACTGLTFVCLSRAKRLVDLIVEPMSFDRIGNLGNSSTMKGRLQEEVRL 90
[Close]
BLAST of mRNA_A-nodosum_M_contig1220.4.1 vs. uniprot
Match: A0A6H5KCP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCP5_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.030e-14
Identity = 33/57 (57.89%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:    1 AVVDLGKSESIAGLTFVCLSRAKRLVDLLIEPIPLERLSKIGDTSTFQLRLRKEVRL 171
            AV+DLG  E+  GLTFVCLSRAKRLVDL++EP+  +R+  +G++ T + RL++EVRL
Sbjct:   37 AVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRL 93
[Close]
BLAST of mRNA_A-nodosum_M_contig1220.4.1 vs. uniprot
Match: A0A6H5JMH2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMH2_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.050e-14
Identity = 33/57 (57.89%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:    1 AVVDLGKSESIAGLTFVCLSRAKRLVDLLIEPIPLERLSKIGDTSTFQLRLRKEVRL 171
            AV+DLG  E+  GLTFVCLSRAKRLVDL++EP+  +R+  +G++ T + RL++EVRL
Sbjct:  103 AVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRL 159
[Close]
BLAST of mRNA_A-nodosum_M_contig1220.4.1 vs. uniprot
Match: A0A6H5JUS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS2_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 4.920e-14
Identity = 33/57 (57.89%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:    1 AVVDLGKSESIAGLTFVCLSRAKRLVDLLIEPIPLERLSKIGDTSTFQLRLRKEVRL 171
            AV+DLG  E+  GLTFVCLSRAKRLVDL++EP+  +R+  +G++ T + RL++EVRL
Sbjct:  210 AVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRL 266
[Close]
BLAST of mRNA_A-nodosum_M_contig1220.4.1 vs. uniprot
Match: A0A6H5KN08_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN08_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 5.380e-14
Identity = 33/57 (57.89%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:    1 AVVDLGKSESIAGLTFVCLSRAKRLVDLLIEPIPLERLSKIGDTSTFQLRLRKEVRL 171
            AV+DLG  E+  GLTFVCLSRAKRLVDL++EP+  +R+  +G++ T + RL++EVRL
Sbjct:   37 AVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRL 93
[Close]
BLAST of mRNA_A-nodosum_M_contig1220.4.1 vs. uniprot
Match: A0A6H5JFG8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG8_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 9.620e-14
Identity = 33/57 (57.89%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:    1 AVVDLGKSESIAGLTFVCLSRAKRLVDLLIEPIPLERLSKIGDTSTFQLRLRKEVRL 171
            AV+DLG  E+  GLTFVCLSRAKRLVDL++EP+  +R+  +G++ T + RL++EVRL
Sbjct:  384 AVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRL 440
[Close]
BLAST of mRNA_A-nodosum_M_contig1220.4.1 vs. uniprot
Match: A0A6H5K4U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4U7_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 9.700e-14
Identity = 33/57 (57.89%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:    1 AVVDLGKSESIAGLTFVCLSRAKRLVDLLIEPIPLERLSKIGDTSTFQLRLRKEVRL 171
            AV+DLG  E+  GLTFVCLSRAKRLVDL++EP+  +R+  +G++ T + RL++EVRL
Sbjct:  101 AVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRL 157
[Close]
BLAST of mRNA_A-nodosum_M_contig1220.4.1 vs. uniprot
Match: A0A6H5J8Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8Y8_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 9.830e-14
Identity = 33/57 (57.89%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:    1 AVVDLGKSESIAGLTFVCLSRAKRLVDLLIEPIPLERLSKIGDTSTFQLRLRKEVRL 171
            AV+DLG  E+  GLTFVCLSRAKRLVDL++EP+  +R+  +G++ T + RL++EVRL
Sbjct:  380 AVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRL 436
[Close]
BLAST of mRNA_A-nodosum_M_contig1220.4.1 vs. uniprot
Match: A0A6H5KFN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFN2_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 3.540e-13
Identity = 30/54 (55.56%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    1 AVVDLGKSESIAGLTFVCLSRAKRLVDLLIEPIPLERLSKIGDTSTFQLRLRKE 162
            AV+DLG  E+  GLTFVCLSRAKRLVDL++EP+  +R+  +G++ T + RL++E
Sbjct:   37 AVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEE 90
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1220.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5KSF1_9PHAE2.560e-1557.89Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K214_9PHAE8.520e-1559.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCP5_9PHAE1.030e-1457.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMH2_9PHAE1.050e-1457.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUS2_9PHAE4.920e-1457.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KN08_9PHAE5.380e-1457.89Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JFG8_9PHAE9.620e-1457.89Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K4U7_9PHAE9.700e-1457.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J8Y8_9PHAE9.830e-1457.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFN2_9PHAE3.540e-1355.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1220contigA-nodosum_M_contig1220:83306..83476 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog400682.PAC_15726636
PFAMsHerpes_Helicase,PIF1
Model size171
Max annot lvl2759|Eukaryota
KEGG koko:K15255
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue3.06e-05
EggNOG OGsCOG0507@1|root,KOG0987@2759|Eukaryota,3A1N8@33154|Opisthokonta,3BR8V@33208|Metazoa
EC3.6.4.12
DescriptionG-quadruplex DNA unwinding
Cds size171
COG categoryL
BRITEko00000,ko01000,ko03029,ko03032
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866649.184611-CDS-A-nodosum_M_contig1220:83305..834761680866649.184611-CDS-A-nodosum_M_contig1220:83305..83476Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1220 83306..83476 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1220.4.1prot_A-nodosum_M_contig1220.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1220 83306..83476 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1220.4.1

>prot_A-nodosum_M_contig1220.4.1 ID=prot_A-nodosum_M_contig1220.4.1|Name=mRNA_A-nodosum_M_contig1220.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=57bp
AVVDLGKSESIAGLTFVCLSRAKRLVDLLIEPIPLERLSKIGDTSTFQLR
LRKEVRL
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mRNA from alignment at A-nodosum_M_contig1220:83306..83476-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1220.4.1 ID=mRNA_A-nodosum_M_contig1220.4.1|Name=mRNA_A-nodosum_M_contig1220.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=171bp|location=Sequence derived from alignment at A-nodosum_M_contig1220:83306..83476- (Ascophyllum nodosum dioecious)
GCCGTCGTCGACCTGGGAAAGTCCGAGTCTATAGCGGGATTGACCTTCGT
GTGTCTCAGCCGCGCTAAACGCCTCGTGGATCTCCTAATAGAGCCCATAC
CTTTAGAGAGGCTTTCCAAAATCGGCGATACTTCTACATTCCAGCTGCGG
TTGCGCAAAGAAGTGCGCCTT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1220:83306..83476-

>mRNA_A-nodosum_M_contig1220.4.1 ID=mRNA_A-nodosum_M_contig1220.4.1|Name=mRNA_A-nodosum_M_contig1220.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=171bp|location=Sequence derived from alignment at A-nodosum_M_contig1220:83306..83476- (Ascophyllum nodosum dioecious)
GCCGTCGTCGACCTGGGAAAGTCCGAGTCTATAGCGGGATTGACCTTCGT
GTGTCTCAGCCGCGCTAAACGCCTCGTGGATCTCCTAATAGAGCCCATAC
CTTTAGAGAGGCTTTCCAAAATCGGCGATACTTCTACATTCCAGCTGCGG
TTGCGCAAAGAAGTGCGCCTT
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