mRNA_A-nodosum_M_contig122.21.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig122.21.1
Unique NamemRNA_A-nodosum_M_contig122.21.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig122.21.1 vs. uniprot
Match: D8LPS8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPS8_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 1.150e-26
Identity = 62/96 (64.58%), Postives = 72/96 (75.00%), Query Frame = 1 
Query:  229 AIPFRGNNIDKAKHTGRWVILSKENPERTVGAEVCHLDRVVLQQGWLCLASDRPGDACLKNIGSIDDFCYQQQLQSTSTRGEGDFDSVREGNDGGV 516
            A+PFRG N+DKAKHTGRWVI  K++PE T G+EVCHLDRVVL Q WL LASDRP DACLK  GS+DD C +QQ QS S+       + RE +DGGV
Sbjct:  520 AVPFRGKNMDKAKHTGRWVIFHKDDPEATQGSEVCHLDRVVLMQTWLSLASDRPADACLKQCGSVDDHCSRQQHQSRSST------AGRERSDGGV 609
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BLAST of mRNA_A-nodosum_M_contig122.21.1 vs. uniprot
Match: A0A7S2HE81_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HE81_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 6.620e-9
Identity = 27/67 (40.30%), Postives = 41/67 (61.19%), Query Frame = 1 
Query:  244 GNNIDKAKHTGRWVILSKENPERTVGAEVCHLDRVVLQQGWLCLASDRPGDACLKNIGSIDDFCYQQ 444
            G ++++AKH GRWV+  + +P+  +G EVCHLD +V++Q W+CLAS       L +    D    QQ
Sbjct:   15 GASLERAKHVGRWVLNRRHDPQGAIGKEVCHLDDLVIEQEWVCLASSTAQSVGLSDSSDKDAMLNQQ 81
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig122.21.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LPS8_ECTSI1.150e-2664.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2HE81_9STRA6.620e-940.30Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig122contigA-nodosum_M_contig122:272060..278315 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LPS8
Model size3513
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons7
Evalue9.25e-15
EggNOG OGs2CIRK@1|root,2SVXF@2759|Eukaryota
Cds size1083
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig122.21.1prot_A-nodosum_M_contig122.21.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig122 273399..276194 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866647.6022072-UTR-A-nodosum_M_contig122:272059..2733981680866647.6022072-UTR-A-nodosum_M_contig122:272059..273398Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig122 272060..273398 -
1680866647.6528647-UTR-A-nodosum_M_contig122:276194..2762401680866647.6528647-UTR-A-nodosum_M_contig122:276194..276240Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig122 276195..276240 -
1680866647.6666465-UTR-A-nodosum_M_contig122:276460..2772081680866647.6666465-UTR-A-nodosum_M_contig122:276460..277208Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig122 276461..277208 -
1680866647.6768718-UTR-A-nodosum_M_contig122:277719..2779081680866647.6768718-UTR-A-nodosum_M_contig122:277719..277908Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig122 277720..277908 -
1680866647.6854722-UTR-A-nodosum_M_contig122:278207..2783151680866647.6854722-UTR-A-nodosum_M_contig122:278207..278315Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig122 278208..278315 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866647.6114168-CDS-A-nodosum_M_contig122:273398..2737821680866647.6114168-CDS-A-nodosum_M_contig122:273398..273782Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig122 273399..273782 -
1680866647.6218967-CDS-A-nodosum_M_contig122:273959..2744571680866647.6218967-CDS-A-nodosum_M_contig122:273959..274457Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig122 273960..274457 -
1680866647.6344345-CDS-A-nodosum_M_contig122:275582..2757441680866647.6344345-CDS-A-nodosum_M_contig122:275582..275744Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig122 275583..275744 -
1680866647.6443408-CDS-A-nodosum_M_contig122:276155..2761941680866647.6443408-CDS-A-nodosum_M_contig122:276155..276194Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig122 276156..276194 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig122.21.1

>prot_A-nodosum_M_contig122.21.1 ID=prot_A-nodosum_M_contig122.21.1|Name=mRNA_A-nodosum_M_contig122.21.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=361bp
MRQSGDLVVLKAPEALEEGQEKRLQSLSKKFLRVFRRKRSRDWRPNHGQD
QYLNIGYGPASSWKKIQEQQENQMCTMHTASTERAHSPNSVSFATSPTTA
AVDHSNMMPGSCIENNVRAHCPYKMQLAEIFGHFIGPRAGTTVIGGYKYG
ARPKTPSGRSCGLHGRRPWNSSRKLDSMTGGRWAVTAGGEDDEKKERQHE
QRKLTSTDRPSKIAWTGPCGVRGVVTRMKGYEKSGFRTFGGDNKAGTVDR
QMARDNILLDDLQQTLRAIVTWARVSPVANKDQGDHDSLASTSADSSSRF
MDDLTNAVDESPGGRDQGPSPQVRQQLWPAPSVPLDDASTTSGRILESAP
QEEMERSSSF*
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mRNA from alignment at A-nodosum_M_contig122:272060..278315-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig122.21.1 ID=mRNA_A-nodosum_M_contig122.21.1|Name=mRNA_A-nodosum_M_contig122.21.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=6256bp|location=Sequence derived from alignment at A-nodosum_M_contig122:272060..278315- (Ascophyllum nodosum dioecious)
AAGCTCTAGACCTACGCGGTTAAGGACGTCGATATCATACGTGTCAGGGG
GAGACGAAGGAGACCAGGATACAGATAACGCAAGAGAACATGATTTTTTC
CTGACCGTGTACGTAGTTTGTCGGGAATAAGGAATAAGGTAGCGAAGATT
GATCGGCAAGAAGCAAGACAGCATAAATGAAAATAATCCATACGAGCTGG
AAACACAAAGGCGTACCGGGATCTTCCACTAGATTCTTCAACTTAGTCCT
TCAAGGTCGAACTTTTTACTCCAAAACTTCTCGACGCCCGCGCAAGATGT
CATCATATACTTTCATGCCAGAAGGACTATACCCGTCATCTCTCCTTGAC
TTCATCGCACCTGAAACCCGCTCCTTCTGCGTCTTGGTGGGCGTGTTTGG
GTCTCAGGTGACACGCAAACGGAATTCGACGCACAGAGCGAGGGGCTCGA
TATCGTCTCCGTCCGTTTCTGCGGCAGAAAGCGGGAACGCGAGCAAAACA
GGCGGGACCATAGCCGGCAAACTTAAGGCCATTCCATTCAGGGGGAATAA
CATTGACAAGGCGAAACACACTGGACGATGGGTGATCCTCAGCAAGGTGG
TGTGTGATGCATTGGCGCCGTTATTAGCTACCTCATACTTGAAGCGCGAA
GCCAGAGCATACTCACTGACGTTGTCGAATAATCCTTGCTCGTCGTAAAA
TCTCCAAAACCAGGTCATACAACCTCCCCAAACAGTGATCGCCATTTTAA
CTTGGGGGTGTCTTTTTTTTCTTGCAGGAAAAGTTGTACCCGTCCTTATT
ATTTTGTCCGACCGCCCTAATATATCTAATATATGTAATATACATATATA
TATATATGACGAGGTAGTCTAGAAGTAAGGCCCACTGAGACGCCACTATA
TAGTACGTCCGAGACTAACAACCCACGAAGCTAAACCTACGGTACGATTT
GGATGTTCTTCTCACGATAATGGTGGCAATCGTCCAGGGTAAGGTAGCCA
CAGGGTGAGGAATCCAAACAACGGGTTTTATTGGCTACAGCACAAGGCCC
AGCTCTCACCGCAAAAACAAGTATGTTCCGGTGTTGTTTTCACTTCGCCT
CGAATAGGAGAACCCGGAACGTACTGTTGGGGCAGAGGTATGCCATCTCG
ACAGAGTCGTCCTTCAGCAAGGGTGGCTGTGCCTCGCCTCCGACAGGCCG
GGCGATGCCTGTCTAAAGAACATCGGATCCATAGATGATTTCTGCTATCA
GCAGCAGCTTCAGTCCACAAGCACTAGGGGGGAGGGAGACTTCGACAGCG
TACGCGAAGGAAATGACGGTGGTGTTTGTGAATGTATCGGTGAAGCGGAG
AGATAGTTTGACGTTTGACGTGACCCATAACCCCAGGGCGGTAAGAGAAT
GACGAAAGTATCGTGTAAGACCAGAAAGCATGTGAAACGGCTGGCGCCAC
TGCGGGTTTCGACACTCAGGAAGGTGCACTTTCTGTTACACAAAATTAGG
GGTACGAATATTGCAACACAAACCTCGCAGCCAAGAGTTTTGCGCGCATG
GATTGTGGCGGGGCATAAACGTGCCGCATACCACAAGATTCGAACATTAG
ATAACTTACCACGTTGTTGCTAATAACAATTTAACAGTAACATTTATACA
ACATTAAAAAAAAACTGACGACCTACACCTTTTGTAAGAGGGCAGATGAT
GTGGTCAAGAGGGCTTTCTCGATCAGGTCAGAGTTCGTGTGGACAGTCGT
TGGCGTGCAATACTCTGCAATAACAGCAAAGCGCAAAGCCAGCGCAGCAA
GCGGCAGGAGCTCCGCGAGGAAGCTTGAGGCTGCCGCGTTACGCCAGCTG
CAAAGGTGTGATGAATCACCGCGTCTTGGCCTTTCAGAGAGTCACAGCTT
GCTAAACCGAGTCTCTTTGCAGCCTTTCATGTGCTGAACTATCTCACTTT
TTCTCTGCTTTGTGAGCGAAAGGTAAGGTTCCGCGTGAAATGTTCGACCC
TGTCATCGCAGATATTGTCACGGTTTATTAATCAAACTACTGATGCTTTG
CTTCAAATTTTCCCATGAAACGCAGTAGCAAAAGCACAAGACTCGTCGCC
GCAACCAAATCGATCCGTGAGATGCGTCAGAGCGGCGACCTCGTGGTCTT
GAAGGCTCCGGTAATGCAAGACTGGTTGGATTTTTCGAAGGGAGAAAAGC
CTATATCTGGTAGTTGTTATCGATGGTGCAGTATTACTGAAGTAGTAGTA
GCACTAGTGTGGTTGGGCGGTTTCAAAGACAGAACCGATATGTTTGCTTG
ATTCAGTAGGTTATGTTGACGCGGGACGGGACTGCCGAACCCGTCTCGCG
AGACCAAATTCTCAGGCGCGAACGCGGGCAGGGAGATATTAATTTTCCCT
GTTCAGCTATCACGTGCAGGATTATCAACCTTACCCGGTTGATCCTTACT
CTTGCTATATGTGTGACCATACACACATACATTGCGCGCATCTTTTTTTT
GTGGTGACGCAACTTGCACCTCTGTTTGTCATCGCCTGCCCCGACTTTCA
AACGTTCCCCGCGAAACGAAGGAAGCACTTGAGGAGGGTCAGGAAAAACG
TCTACAATCGTTAAGCAAGAAATTTCTTCGAGTCTTCCGCCGCAAGAGGT
CCAGGGACTGGAGACCAAATCACGGACAAGATCAGTATCTCAATATCGGT
TACGGTCCCGCAAGCTCTTGGAAGAAGATACAGGTTAAGAGTTTGGAACA
CGAGCGATCCATGACATAACAAAAAGTATAGGCATTACTGAAGTGCTGAA
ATAATGTCAACAAGGCTTGGCGGCGTCAAGGAGGGAAAGTTAAGTCGCGG
TCATGACACACAAACACAATGTGACAGCAACTAATAGTACGACCATTGAT
GTCCCTAAAGGACTACCAATACGAGAAGCTTGGAATGATTAGCAACACAG
ACAGGGCGAGATAGCACGGTTATGGGCAATTTAGTTTATAAGACACGTAT
TCCCCGTTGGGAGGGTTGATAAGACACATAGAAGCATATAATAATGGTTT
CTCTTGCACGACAGGGTTGGATTGCGCGTTCACGTGCAATCTGATAATTA
CACACCACACAAAGACTTAAATTAACTGGGATTTTTAATATTATGAGCTG
CATATATCTCCCCCCGGCAGTCTCTCCGCAACATACAACCAGTTATTTAA
TGACAAAAAGAAAAATGGGGGGCAACATCCGCATCCACATATCCCTCCGG
TATTGAAAGCTACTCGATTGCAGAGCATTGCGCTGGCTAAATCCAATGCA
AAACATTCGATGAAGTCGCTACTGAGATATCTATGTTTGGTGAGGCAAAG
GCATCCAAAAGCACCGCGAAGTCAAAATTAAGCAGTCGTGAGTTCTAATG
GTTCTTATGTCCTGTTGTTCCTTGCAAAAAAAAAGTCGAAAGCGACCATT
TCGACAACTAACAAAAGCCACCCGGGATATTGCTGTCCAAACTCTACGCC
GACGTGTGTTTGACAACGCGTACGGGTTTTCACATTATTATTCCGTCACT
CACTTTGCCACGTTAATACCGTGGGTAGTGAGGGTGATTGGGCCCTGGAA
ACAAAGCGCACGGAGTTCGTTAAGAGATACCCGCAGACGATTAAAAACTT
CACCAAAGGCTCCGAAAAATCCAGACGAGACGACGCGCGGTATTCTATCC
CACGACGATCTCATCCGTTGTTGATGCGCGATTGTTGGTCTGTTCCCGTG
ACAACACAGAGCGTAAGCGTTTCGCGGACCACGCATGACCCAACCAATGG
ATCTGCACACTATTATCAACCTCGTCTTCCCATAACATGTCGCATCGGAC
GCCCTCAGGAGCAACAGGAGAATCAGATGTGCACGATGCACACAGCTTCC
ACCGAGAGAGCTCATTCGCCGAACTCCGTCTCGTTCGCGACCAGCCCCAC
CACCGCCGCCGTGGACCATTCCAACATGATGCCCGGCTCATGTATCGAGA
ATAACGTGCGGGCGCATTGCCCTTACAAGATGCAGCTGGCAGAGATATTT
GGACATTTTATCGGTCCACGTGCAGGTACTACTGTAATAGGCGGATACAA
ATATGGCGCAAGACCAAAGACCCCTAGTGGTCGATCTTGTGGACTCCATG
GTCGGCGACCCTGGAACTCATCTCGAAAGCTAGATAGCATGACTGGCGGA
AGATGGGCTGTTACCGCGGGCGGAGAAGACGACGAAAAAAAGGAACGGCA
ACACGAGCAGCGAAAGCTAACCTCGACGGATAGACCATCAAAAATAGCCT
GGACAGGGCCATGCGGCGTGCGGGGCGTGGTTACAAGGATGAAAGGGTAT
GAGAAGGTGATCAAGATAGCGTACCGACTCCGCAGAATAGTTATGCTGGG
TTTTAAGATAGTTGTTCCTTTCCAAGTAAACCCTCTGTACGTCGATAATG
AAACCCTCTGAATGTGCCGTTACCGAAAACCTGCTCCCCACCCCATCGCC
AACTTTGCCATTTCAACTACTTCCCACAAACAGTCCGGTTTCCGAACGTT
TGGTGGCGACAACAAGGCGGGCACTGTCGATCGGCAGATGGCTCGTGACA
ATATACTTTTGGATGACCTGCAGCAAACGCTTCGTGCCATTGTGACGTGG
GCTCGCGTGAGCCCCGTGGCTAACAAAGACCAAGGAGACCACGACTCTCT
GGCCTCGACGTCTGCAGACAGCAGCAGTCGTTTCATGGATGATTTGACTA
ACGCCGTTGACGAATCGCCAGGGGGGAGAGACCAGGGCCCCTCGCCACAG
GTACGGCAGCAGCTGTGGCCCGCGCCATCAGTCCCGCTGGACGATGCGAG
CACCACATCAGGAAGAATACTGGAGAGTGCACCGCAAGAGGAAATGGAGC
GGTCCAGCAGTTTCTAATGCACCGATTTTAAAAAGTCGGAGAAAGGCGAA
ACAACCGACACACATAATATAGGGACGGCTGGGCGCAACCTACTCGCTTT
ACCTCGAGATAAGGCGGATAAACCAACCGATCCCGAGTGTCGCGTCTTTC
GTAAGAGCGAAGAAATTGTAAATCAAACCCCCCTATCTGTTAGATCGAGT
TCCTTAAGTACGACAGCCAATACCATGGCGACGTAGGTGTCGAAAATCAT
GACGAGAGTCCTACTGCGGCGGCCACTGGACAAGGGGCGACACCAACTAC
GCAACCATCGGGGAACCCATGAGCAGCAGCATTGGCATCAAGTATGTAAG
AAGCGATATTTGGATTGCTCTGGTTGATCTCACTGACGACGAGTGCATGA
GTTCCTTGCGGTACGCCAGACCGTCTATATTTGGTAAGCCTATTTTTGGG
CATCCCCGTGGCGCTGCTGCTCCTCGACCATGATATGCGTTTAGTACAAC
TTACGCCGGGTGGCTGCCCGTAGCAACCAAGCACGGTCATCGGCAACAAC
CAACCACTCCGTCGTTTCGAAGAAAAGAACCGGACAACAGCAAGACAAGA
GAGTTCGGCGTGGAGGTGTTGCTTAAGTAATGATAATGCTTGTGGATGAA
AGCGAAGAGGTTGCCCCGGTGCATGATTGGTGGGCTATTGAAGGTGAATA
GTTGTGCACATCTTCCTTCCCCAAAACAAAGAAAGGGTGTGGTTGTAAGA
AAGGGTATACTGTGGGGAGCACGGTGGGGGCACGGCGGGAGCATGCGACA
AAGTGCCGTCATTGATATGGAAAATCGCTACCAGCGTGACCAACTATATG
TTTGAGTAGCTCGTCATCATACCTGTGCTCGAGTCATACCGTTCCACCAA
CCTGCTGCAGTGGTACCATTACCCTCACTGAAAAACTCCGAATCGGTAGC
GTCTTCGACATTATGATTCCCATATCAAACAAACGGCCGTGCCATTAATA
GTCGGCGCCCAGAGTAAGTTGGCGTGCGGAGAAAATTATACACCACAGCG
AGGACGGTGACATTTCAACTGGGACTAGCTCTTTACGCTCTTTACGAGTA
AGATGAAAAGACGTCAGAGACGATGCAGATAAAATTGGCGCTGTAGGGAA
CAAGAGCAATGATAGGAGCATGTACCTCACACATCGATCTGCTCGGGGGG
AAAAATCCTACATTCTTACTACTAGCTCTAGAGGGGGCTCGAAGCGGGTA
AAGAGGGCGATACAGGTTCAGGTGCGGTGGCTGGACCGTCACCACGCCTT
GAGAATGTAGAAAATCCGCAATAACAATAGGAGGCGATGGTAATGGAAAT
CTACCG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig122:272060..278315-

>mRNA_A-nodosum_M_contig122.21.1 ID=mRNA_A-nodosum_M_contig122.21.1|Name=mRNA_A-nodosum_M_contig122.21.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1083bp|location=Sequence derived from alignment at A-nodosum_M_contig122:272060..278315- (Ascophyllum nodosum dioecious)
ATGCGTCAGAGCGGCGACCTCGTGGTCTTGAAGGCTCCGGAAGCACTTGA
GGAGGGTCAGGAAAAACGTCTACAATCGTTAAGCAAGAAATTTCTTCGAG
TCTTCCGCCGCAAGAGGTCCAGGGACTGGAGACCAAATCACGGACAAGAT
CAGTATCTCAATATCGGTTACGGTCCCGCAAGCTCTTGGAAGAAGATACA
GGAGCAACAGGAGAATCAGATGTGCACGATGCACACAGCTTCCACCGAGA
GAGCTCATTCGCCGAACTCCGTCTCGTTCGCGACCAGCCCCACCACCGCC
GCCGTGGACCATTCCAACATGATGCCCGGCTCATGTATCGAGAATAACGT
GCGGGCGCATTGCCCTTACAAGATGCAGCTGGCAGAGATATTTGGACATT
TTATCGGTCCACGTGCAGGTACTACTGTAATAGGCGGATACAAATATGGC
GCAAGACCAAAGACCCCTAGTGGTCGATCTTGTGGACTCCATGGTCGGCG
ACCCTGGAACTCATCTCGAAAGCTAGATAGCATGACTGGCGGAAGATGGG
CTGTTACCGCGGGCGGAGAAGACGACGAAAAAAAGGAACGGCAACACGAG
CAGCGAAAGCTAACCTCGACGGATAGACCATCAAAAATAGCCTGGACAGG
GCCATGCGGCGTGCGGGGCGTGGTTACAAGGATGAAAGGGTATGAGAAGT
CCGGTTTCCGAACGTTTGGTGGCGACAACAAGGCGGGCACTGTCGATCGG
CAGATGGCTCGTGACAATATACTTTTGGATGACCTGCAGCAAACGCTTCG
TGCCATTGTGACGTGGGCTCGCGTGAGCCCCGTGGCTAACAAAGACCAAG
GAGACCACGACTCTCTGGCCTCGACGTCTGCAGACAGCAGCAGTCGTTTC
ATGGATGATTTGACTAACGCCGTTGACGAATCGCCAGGGGGGAGAGACCA
GGGCCCCTCGCCACAGGTACGGCAGCAGCTGTGGCCCGCGCCATCAGTCC
CGCTGGACGATGCGAGCACCACATCAGGAAGAATACTGGAGAGTGCACCG
CAAGAGGAAATGGAGCGGTCCAGCAGTTTCTAA
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