mRNA_A-nodosum_M_contig122.16.2 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig122.16.2
Unique NamemRNA_A-nodosum_M_contig122.16.2
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig122.16.2 vs. uniprot
Match: A0A6H5KNE0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNE0_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 2.060e-47
Identity = 79/100 (79.00%), Postives = 89/100 (89.00%), Query Frame = 1
Query:    7 SLQLGKTFSLWPEPADGSVLNTTGAYSLCRHPMYTGLVMFSLGLGFSTGSFTRIALACLLGYVLVSGDREADLEEEKLMDIHPAYKTYKEEVSKFLPSVY 306
            +LQLG+ FS WPEPA+G VLNTTG YSLCRHPMY GLV FSLGLGFST SFTRIALACLLGYVL   DR+AD+EEEKL+ +HPAYKTYKEEVSKF+P++Y
Sbjct:  119 ALQLGRNFSPWPEPAEGGVLNTTGVYSLCRHPMYAGLVAFSLGLGFSTDSFTRIALACLLGYVL---DRKADMEEEKLVAVHPAYKTYKEEVSKFVPTLY 215          
BLAST of mRNA_A-nodosum_M_contig122.16.2 vs. uniprot
Match: D8LPT1_ECTSI (S-isoprenylcysteine O-methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPT1_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 3.020e-47
Identity = 79/100 (79.00%), Postives = 89/100 (89.00%), Query Frame = 1
Query:    7 SLQLGKTFSLWPEPADGSVLNTTGAYSLCRHPMYTGLVMFSLGLGFSTGSFTRIALACLLGYVLVSGDREADLEEEKLMDIHPAYKTYKEEVSKFLPSVY 306
            +LQLG+ FS WPEPA+G VLNTTG YSLCRHPMY GLV FSLGLGFST SFTRIALACLLGYVL   DR+AD+EEEKL+ +HPAYKTYKEEVSKF+P++Y
Sbjct:  132 ALQLGRNFSPWPEPAEGGVLNTTGVYSLCRHPMYAGLVAFSLGLGFSTDSFTRIALACLLGYVL---DRKADMEEEKLVAVHPAYKTYKEEVSKFVPTLY 228          
BLAST of mRNA_A-nodosum_M_contig122.16.2 vs. uniprot
Match: A0A836C7I2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7I2_9STRA)

HSP 1 Score: 121 bits (303), Expect = 5.060e-30
Identity = 60/96 (62.50%), Postives = 71/96 (73.96%), Query Frame = 1
Query:   10 LQLGKTFSLWPEPADGSVLNTTGAYSLCRHPMYTGLVMFSLGLGFSTGSFTRIALACLLGYVLVSGDREADLEEEKLMDIHPAYKTYKEEVSKFLP 297
            L LGK  S WP+P + +VL TTG YS+CRHPMY GL+ FS GLGF+T SFTRIALA LL Y L   D++A  EE+ L  +HPAYKTY+EEV KF P
Sbjct:  155 LGLGKNLSPWPQPCENNVLITTGVYSICRHPMYAGLLAFSFGLGFATDSFTRIALAALLLYTL---DKKATEEEKALEAVHPAYKTYQEEVPKFFP 247          
BLAST of mRNA_A-nodosum_M_contig122.16.2 vs. uniprot
Match: A0A7S0MLQ9_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MLQ9_9CRYP)

HSP 1 Score: 82.4 bits (202), Expect = 1.680e-16
Identity = 43/101 (42.57%), Postives = 62/101 (61.39%), Query Frame = 1
Query:    1 EGSLQLGKTFSLWPEPADGSVLNTTGAYSLCRHPMYTGLVMFSLGLGFSTGSFTRIALACLLGYVLVSGDREADLEEEKLMDIHPAYKTYKEEVSKFLPSV 303
            +GS  LG+  + WP+P + + L T GAY+LCRHP+Y GL++   GL  +T S  R+  A  L +VL+  DR+A  EE  L + H  Y +YK  V +F PS+
Sbjct:   14 QGSRSLGENLTPWPKPTEENQLTTDGAYALCRHPIYGGLLLACFGLSITTASPARLLFAAAL-FVLM--DRKAAREEVWLSEKHDGYSSYKSAVPRFFPSL 111          
BLAST of mRNA_A-nodosum_M_contig122.16.2 vs. uniprot
Match: A0A2V3IUX4_9FLOR (Cobalt-zinc-cadmium resistance protein CzcN n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUX4_9FLOR)

HSP 1 Score: 77.8 bits (190), Expect = 1.430e-13
Identity = 39/95 (41.05%), Postives = 57/95 (60.00%), Query Frame = 1
Query:   22 KTFSLWPEPADGSVLNTTGAYSLCRHPMYTGLVMFSLGLGFSTGSFTRIALACLLGYVLVSGDREADLEEEKLMDIHPAYKTYKEEVS-KFLPSV 303
            K  S+WP P     L T+GAY   RHPMY+G+V+ S+G   +TGS  R+AL+      L    ++ D+EE+ L D +P Y+ Y EEV  K +P++
Sbjct:  172 KQLSIWPAPVPNGELQTSGAYEYVRHPMYSGVVLASVGFAVATGSPARLALSIAFAAFL---SKKIDVEEQFLKDAYPGYEEYSEEVPYKMIPTI 263          
BLAST of mRNA_A-nodosum_M_contig122.16.2 vs. uniprot
Match: UPI001C405819 (isoprenylcysteine carboxylmethyltransferase family protein n=1 Tax=Anthocerotibacter panamensis TaxID=2857077 RepID=UPI001C405819)

HSP 1 Score: 74.3 bits (181), Expect = 3.470e-13
Identity = 42/97 (43.30%), Postives = 53/97 (54.64%), Query Frame = 1
Query:   16 LGKTFSLWPEPADGSVLNTTGAYSLCRHPMYTGLVMFSLGLGFSTGSFTRIALACLLGYVLVSGDREADLEEEKLMDIHPAYKTYKEEVSKFLPSVY 306
            LG   + +P P     L TTG YSL RHP+YTG+V+ SLGL   T S  R+ L   L  V    D +A  EE+ L +  P Y  Y++ V KF P VY
Sbjct:   57 LGPNLTPFPRPRPEGQLVTTGIYSLIRHPLYTGVVLASLGLSLFTNSLLRLLLTVALFLV---HDLKASREEQWLEERFPEYPNYRQRVKKFFPGVY 150          
BLAST of mRNA_A-nodosum_M_contig122.16.2 vs. uniprot
Match: A0A7S2XU15_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XU15_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 4.310e-13
Identity = 44/103 (42.72%), Postives = 62/103 (60.19%), Query Frame = 1
Query:    4 GSLQLGKTFSLWPEPADGSV---LNTTGAYSLCRHPMYTGLVMFSLGLGFSTGSFTRIALACLLGYVLVSGDREADLEEEKLMDIHPAYKTYKEEV-SKFLPS 300
            G  ++G + S WP P        L  +G +S  RHP+Y+GL++FS GL  ST S  R+ L  +L YVL   D ++D EE+KLM++ P Y  Y++EV  KF PS
Sbjct:  163 GVNEMGGSLSPWPVPPSNESNKQLIKSGLFSKVRHPIYSGLLLFSAGLSISTDSANRLLLTAILLYVL---DVKSDYEEKKLMEVFPDYAEYQKEVPGKFFPS 262          
BLAST of mRNA_A-nodosum_M_contig122.16.2 vs. uniprot
Match: UPI001C40172A (isoprenylcysteine carboxylmethyltransferase family protein n=1 Tax=Anthocerotibacter panamensis TaxID=2857077 RepID=UPI001C40172A)

HSP 1 Score: 73.6 bits (179), Expect = 6.760e-13
Identity = 39/97 (40.21%), Postives = 55/97 (56.70%), Query Frame = 1
Query:   16 LGKTFSLWPEPADGSVLNTTGAYSLCRHPMYTGLVMFSLGLGFSTGSFTRIALACLLGYVLVSGDREADLEEEKLMDIHPAYKTYKEEVSKFLPSVY 306
            L   F+++P P     L T G Y L RHP YTGL++F LG+ F T S  ++ L   L   LV  D +A +EE  L    P Y +Y+++V KF+P +Y
Sbjct:   57 LRSNFTVFPRPRPEGELVTDGIYGLMRHPFYTGLILFCLGISFLTDSLIKLLLTVGL---LVFLDAKARVEERWLEGRFPQYTSYRQQVKKFIPGIY 150          
BLAST of mRNA_A-nodosum_M_contig122.16.2 vs. uniprot
Match: UPI00042365D6 (isoprenylcysteine carboxylmethyltransferase family protein n=1 Tax=Flavobacterium gelidilacus TaxID=206041 RepID=UPI00042365D6)

HSP 1 Score: 72.4 bits (176), Expect = 2.010e-12
Identity = 37/98 (37.76%), Postives = 59/98 (60.20%), Query Frame = 1
Query:   10 LQLGKTFSLWPEPADGSVLNTTGAYSLCRHPMYTGLVMFSLGLGFSTGSFTRIALACLLGYVLVSGDREADLEEEKLMDIHPAYKTYKEEVSKFLPSV 303
            LQL K  +++P P   S L T G Y   RHP+Y+GL++F+LG  F   S+ +IA+A +L   L+    + + EE+KL+     Y  YK++V++F P +
Sbjct:   55 LQLNKNLTVFPTPKTDSELITFGMYKFSRHPIYSGLILFTLGYAFFKASYFKIAIALIL---LLLFYFKTNYEEQKLLQKFSNYNDYKKKVNRFFPKI 149          
BLAST of mRNA_A-nodosum_M_contig122.16.2 vs. uniprot
Match: A0A7S0E531_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0E531_9CRYP)

HSP 1 Score: 74.3 bits (181), Expect = 2.130e-12
Identity = 38/96 (39.58%), Postives = 63/96 (65.62%), Query Frame = 1
Query:   16 LGKTFSLWPEPADGSVLNTTGAYSLCRHPMYTGLVMFSLGLGFSTGSFTRIALACLLGYVLVSGDREADLEEEKLMDIH-PAYKTYKEEVSKFLPS 300
            LG++ S +P+  + +VL T G YS+CRHPMY GL++  +GL  +T SF+R+    +L  +L   +++AD+EE  L+  H  +YK Y ++V K +P+
Sbjct:  141 LGESLSPFPKATEDNVLQTDGVYSICRHPMYGGLILACIGLAMTTVSFSRMLFTIILLLIL---NQKADVEEGFLVQKHGESYKEYAKKVPKLVPN 233          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig122.16.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KNE0_9PHAE2.060e-4779.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LPT1_ECTSI3.020e-4779.00S-isoprenylcysteine O-methyltransferase n=1 Tax=Ec... [more]
A0A836C7I2_9STRA5.060e-3062.50Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0MLQ9_9CRYP1.680e-1642.57Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A2V3IUX4_9FLOR1.430e-1341.05Cobalt-zinc-cadmium resistance protein CzcN n=1 Ta... [more]
UPI001C4058193.470e-1343.30isoprenylcysteine carboxylmethyltransferase family... [more]
A0A7S2XU15_9STRA4.310e-1342.72Hypothetical protein n=1 Tax=Attheya septentrional... [more]
UPI001C40172A6.760e-1340.21isoprenylcysteine carboxylmethyltransferase family... [more]
UPI00042365D62.010e-1237.76isoprenylcysteine carboxylmethyltransferase family... [more]
A0A7S0E531_9CRYP2.130e-1239.58Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig122contigA-nodosum_M_contig122:187618..188571 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size681
Hectar predicted targeting categorysignal peptide
Exons2
Ec32 ortholog descriptionPhospholipid methyltransferase
Ec32 orthologEc-18_002350.1
Cds size207
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866646.7566173-UTR-A-nodosum_M_contig122:187617..1877191680866646.7566173-UTR-A-nodosum_M_contig122:187617..187719Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig122 187618..187719 +
1680866647.0301826-UTR-A-nodosum_M_contig122:188199..1885711680866647.0301826-UTR-A-nodosum_M_contig122:188199..188571Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig122 188200..188571 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866646.7694573-CDS-A-nodosum_M_contig122:187719..1878241680866646.7694573-CDS-A-nodosum_M_contig122:187719..187824Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig122 187720..187824 +
1680866646.8926208-CDS-A-nodosum_M_contig122:188097..1881991680866646.8926208-CDS-A-nodosum_M_contig122:188097..188199Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig122 188098..188199 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig122.16.2prot_A-nodosum_M_contig122.16.2Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig122 187720..188199 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig122.16.2

>prot_A-nodosum_M_contig122.16.2 ID=prot_A-nodosum_M_contig122.16.2|Name=mRNA_A-nodosum_M_contig122.16.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=69bp
MYTGLVMFSLGLGFSTGSFTRIALACLLGYVLVSGDREADLEEEKLMDIH
PAYKTYKEEVSKFLPSVY*
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mRNA from alignment at A-nodosum_M_contig122:187618..188571+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig122.16.2 ID=mRNA_A-nodosum_M_contig122.16.2|Name=mRNA_A-nodosum_M_contig122.16.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=954bp|location=Sequence derived from alignment at A-nodosum_M_contig122:187618..188571+ (Ascophyllum nodosum dioecious)
GAAGGTTCCCTCCAGCTGGGCAAGACCTTCTCGCTGTGGCCAGAGCCGGC CGACGGAAGCGTGCTCAATACCACGGGGGCGTACTCGCTGTGCCGTCACC CCATGTACACCGGGCTCGTGATGTTCTCTCTCGGCCTCGGCTTCTCGACG GGATCGTTCACGCGCATCGCTCTCGCCTGTCTGCTAGGGTATGTGCTGGT GAGTGGAGTTCTACGTGGTGAAACAGAAGGGCAACAGCGGGAGGGGGAGG GGGGGGGATCCGTTGTCCGGTTTGGTTCGTGTGCGTGTTAAATGCGTGGC TTGGGAGTTGATTGAGATTCCTTGGATCGATCTCTTGCCCGTGACACAGC TAGAGCGTACCTGGTACGTCCGTCTCGCGATTCGTTTGCGGAATCTTAAG AAGGCCACCCCGCGCTCTTGTTGCTTGGGTGGCGGTCGACATATTTCGCG TGTCGGCGGTGGACGCGCGGTTTTTGACAGGACCGGGAGGCGGACCTCGA AGAAGAGAAGCTCATGGACATCCACCCGGCGTACAAGACATACAAGGAGG AGGTCTCCAAGTTCCTCCCCTCCGTATACTAAAGTGTAGCGTGTTCGTTT TTTGGCGTGTTTTTTGTTTTTTTGTGTGTTTTTTTCTTCTGTGGATCCTT CGATCGGGAAGGGGAACGAAGCGATGTAGTGCGATGCGATGCGGTACAAA ACTCGGCGCATCTGGCGTCGACATTAGAGCGCCACTTTTATTTTTTATTT TCTCTTTGCTTCGTTTTGTTTTTCTTTTTGGCGTTGCGGGCGACCGCGCG AAAGGGTGGGGCCGCTAGCGGTCTCCCCCGAGCGCAAAGGGAACATTATG CCACGACGTCCGATTGTACACCAGCGATGAGAAGGGAACATTCTGCTAGC GGCAGTGTTCGTAGAGACGAGAGGCGTAGTACAGTAGGGAGGTTGGGGAT GGGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig122:187618..188571+

>mRNA_A-nodosum_M_contig122.16.2 ID=mRNA_A-nodosum_M_contig122.16.2|Name=mRNA_A-nodosum_M_contig122.16.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=207bp|location=Sequence derived from alignment at A-nodosum_M_contig122:187618..188571+ (Ascophyllum nodosum dioecious)
ATGTACACCGGGCTCGTGATGTTCTCTCTCGGCCTCGGCTTCTCGACGGG
ATCGTTCACGCGCATCGCTCTCGCCTGTCTGCTAGGGTATGTGCTGGTGA
GTGGAGACCGGGAGGCGGACCTCGAAGAAGAGAAGCTCATGGACATCCAC
CCGGCGTACAAGACATACAAGGAGGAGGTCTCCAAGTTCCTCCCCTCCGT
ATACTAA
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