mRNA_A-nodosum_M_contig1218.11.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1218.11.1
Unique NamemRNA_A-nodosum_M_contig1218.11.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1218.11.1 vs. uniprot
Match: D8LSU4_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSU4_ECTSI)

HSP 1 Score: 204 bits (519), Expect = 5.930e-56
Identity = 116/206 (56.31%), Postives = 142/206 (68.93%), Query Frame = 1 
Query:  118 MRARDMIDALDRVSLFRAQALNSHRRLDDIGSDLDGAISLLDLQLQ-QSPDNEAGAATGVTQGIHRAVLDWSTGIIAKLAGAIPPRSETKTRSLAAVAPGGTGKSNINDRHARNSRRWLLDPRIWEAFVRSLEGAAV-ATEPTTHVPLAAGVPVLRAAVLAVREAESGGRVDQGKAENEDDDGSAMEAVASAGDWAFIAIRKLCGG 729
            MRA D++DAL+RV+LFRAQA +S+RRL+DIGSDLD AISLLDLQ Q +  ++  GA TGVTQG+HRAVLDWSTG+I KLA A+P     K  ++AA     T  +  ++RHARN+R WL DPRIW  FVRSL G A  A EP+TH+P AA + VLRAA+ AVR    G     G A    +  SA    A AGDWAF+A+  LCGG
Sbjct:    1 MRAHDVLDALERVTLFRAQAADSNRRLEDIGSDLDSAISLLDLQQQCREAEHPDGAVTGVTQGVHRAVLDWSTGVIVKLAAALP-----KHATIAASPNVST--TTTSERHARNARGWLSDPRIWRCFVRSLRGGATQAAEPSTHLPQAASLGVLRAAIFAVRAGAPGAAAAAGAAARAWESCSAPPQAAGAGDWAFVAVLTLCGG 199
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BLAST of mRNA_A-nodosum_M_contig1218.11.1 vs. uniprot
Match: A0A6H5JIT9_9PHAE (Urb2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIT9_9PHAE)

HSP 1 Score: 202 bits (514), Expect = 2.910e-55
Identity = 120/223 (53.81%), Postives = 145/223 (65.02%), Query Frame = 1 
Query:  112 SKMRARDMIDALDRVSLFRAQALNSHRRLDDIGSDLDGAISLLDLQLQQSPDNEA--GAATGVTQGIHRAVLDWSTGIIAKLAGAIPPRSETKTRSLAAVAPGGTGKSNINDRHARNSRRWLLDPRIWEAFVRSLEGAAV-ATEPTTHVPLAAGVPVLRAAVLAVREAESGGRVDQGKAENEDDDGSAMEAVASA--------------GDWAFIAIRKLCGG 729
            ++MRA D++DAL+RV+LFRAQA +S+RRL+DIGSDLD AISLLDLQ QQ  + E   GAATGVTQG+HRAVLDWSTG+I KLA A+P     K  ++AA     T  +  ++RHARN+RRWL DPRIW  FVRSL G A  A EP+TH+P AA + VLRAA+ AVR    G     G A    D  SA    A                GDWAF+A+  LCGG
Sbjct:   28 AEMRAHDVLDALERVTLFRAQAADSNRRLEDIGSDLDSAISLLDLQQQQCREAEHPDGAATGVTQGVHRAVLDWSTGVIVKLAAALP-----KHATIAASTNVST--TTTSERHARNARRWLSDPRIWRCFVRSLRGGATQAAEPSTHLPQAASLGVLRAAIFAVRAGAPGSLAAAGAAARAGDSCSASPQAAEPNNDGVAXXXXXXXXGDWAFVAVLTLCGG 243
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1218.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSU4_ECTSI5.930e-5656.31Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JIT9_9PHAE2.910e-5553.81Urb2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1218contigA-nodosum_M_contig1218:114364..117641 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size850
Hectar predicted targeting categoryother localisation
Exons2
Cds size732
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866641.7033217-CDS-A-nodosum_M_contig1218:114363..1149351680866641.7033217-CDS-A-nodosum_M_contig1218:114363..114935Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1218 114364..114935 -
1680866641.714289-CDS-A-nodosum_M_contig1218:117364..1175241680866641.714289-CDS-A-nodosum_M_contig1218:117364..117524Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1218 117365..117524 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866641.7267582-UTR-A-nodosum_M_contig1218:117524..1176411680866641.7267582-UTR-A-nodosum_M_contig1218:117524..117641Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1218 117525..117641 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1218.11.1prot_A-nodosum_M_contig1218.11.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1218 114364..117524 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1218.11.1

>prot_A-nodosum_M_contig1218.11.1 ID=prot_A-nodosum_M_contig1218.11.1|Name=mRNA_A-nodosum_M_contig1218.11.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=244bp
MRARDMIDALDRVSLFRAQALNSHRRLDDIGSDLDGAISLLDLQLQQSPD
NEAGAATGVTQGIHRAVLDWSTGIIAKLAGAIPPRSETKTRSLAAVAPGG
TGKSNINDRHARNSRRWLLDPRIWEAFVRSLEGAAVATEPTTHVPLAAGV
PVLRAAVLAVREAESGGRVDQGKAENEDDDGSAMEAVASAGDWAFIAIRK
LCGGDDSAGKGLPIVKGAAPGALSSHTVGVGEGRGGVLDLDETG
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mRNA from alignment at A-nodosum_M_contig1218:114364..117641-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1218.11.1 ID=mRNA_A-nodosum_M_contig1218.11.1|Name=mRNA_A-nodosum_M_contig1218.11.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3278bp|location=Sequence derived from alignment at A-nodosum_M_contig1218:114364..117641- (Ascophyllum nodosum dioecious)
CAAGATAAACAATATGTGTGTGTTTGTATGGTCACAGATTGGAGATGATT
GCTTCATCGTCCCTAATTTCCTTGGTCCTGGTGGCTCGACAACTCGGAGT
GTCTGCGGCAGTCCAAGATGCGCGCTCGCGACATGATCGATGCGCTCGAT
AGGGTCTCCCTTTTCCGAGCTCAGGCATTGAACTCGCATCGGCGCCTGGA
CGACATTGGAAGCGACCTTGACGGGGCGATTTCGCTGCTCGATCTCCAAC
TACAGCAGTCTCCCGACAACGAAGCAGGTTAGACATACTAAACAATTATT
GCTGCAACACGTATGAATTGACCGTACGCCCAGATTACACACAGTAGCCA
ACATTATTACAATACTATCATGTGCTTGAACTACCCGGCTGAGAGGCGTC
AGCGCGGGGCGATTGTACAGCGAAGCTCCTGTAGTTGGCGTCAATTTTAT
CTTCGAGTCGAAGACATCCAAGAATCCACGGCAGGTACAAATTTGTTTGA
TTTCAAACGTGAACGCCGATCGGGTACCGGGGTACCGTTCGTCTTGATAC
TGTACTTGCATTCACTGTAGTACCTTTACTCTAATACTACGAAGTGGGAT
TTTTTATTTTTCCTCAAAAAATAAATAAATAAAATAAAAAATAAAATGTC
CAACAAGTGGAAAACAATTACTGTAGCTCCAATTCGTTAGTACACAAAAT
TCGATTTCACGGTCGACGAGGGAAAGGGATGGCTGAATCCTTCTCGCGAG
AAAAAATAAGGCAAGCACCGCAGAAGGAAAGTGGATGAGAAATCCTGTGT
GACGTTCCTCCTGTGTGACCCCGGCTGGTACGTCCACAAGCCCGACGTCC
AGAATAAATGGGAAGGCAACACACACACACACAGGCACAAGTATCATTGA
TCCCCCCTTGGGAGGATCAACGCGAGTGGCATAGAATGACTAGGATGACA
AGGCCGGATTGCGCGGTTATGTGCAATTTAATAAATACACACACACACAC
ACCATTGATCCCCCCTTGGGAGGATCAATGCGAGTGGCATAGAATGCCTA
GGATGACAGGGCCGGATTGCGCGGTTATGTACACACAGCGAGGACAGTGG
CGGAGATGGGAACGGGAACGACGATAACGGGAACGGGAACGAGAATAGGA
TCGGGGAGAGCGAAAGAGAGGCGAAAAAGCGCAAGAAACCGCAAAATAGT
TGTAGACGCCGTGCGGGAAACGGGGGAGACACGGGTGGAAAGAGAAAAAA
ATGTAGAATAGAAAGGGTTGGTTCAGTAGTTGCCAACCCAGATAATCTAG
AGAGCAACAAGGAAGCAGGGGGGGGAGCACAAGGTATTCAAGGCTCAAGT
AAGAATTGTACAAGTAGAGAGAGTGTGTCCCCTCTGTCGCGCCTGATCAG
AGGTTTTCGTACCAAGTATCATCTGATCCCCTTGGGAGGATCAATGCGAG
TGGCATAGAATGACTATTAATAGGATGATTAACAGGGCCGGATTGCGCGG
TTATGTTCAATTTAATAAATACACACACACACACATCCCCCCTTGGGAGG
ATCAATGCGAGTGGCATAGAATGACTAGGATGACCGGGCCGGATTGCGCG
GTTATGTGCAATTTAATAAATACACACACACACTCTCATTGATCCTCCTC
TTGGGAGGATCAATGCGAGTGGCATAGAATGACTAGGATGATAGGGCCGG
ATTGCGCGGTTATGTGTAATTTAATAAATACGCACACACACACACGCACC
CTTAGGAGGATCAATGCGAGTGGCATATAATGACTAGGATAACAGGGCCG
GATTGCGCGGTTATATGCAATTTAATTTAAATGTAAGTGTACAGTATGTA
TGTATGTCTGTATGGTCATCACATATATATATCACATATAGCAGAGTATG
GATCAACCGGGTAAGGTCGCCAATCCTGCTCGTGATCAGCTGAACAGGGA
AAACTACAGTATAACGGTGGGCTTCTCCCCGACTTTATACTGTTGACCCA
ATGTTACTACCATAGGGGAACCCGTTTCAATGTCATGAAGAGGTTTTGTA
TTTGCAGCCTATGGTCCCACCTAAACGTTTTGACAGTTTTCCCCCCTGAC
TGGGGGATGCTCAGAAGGTCTAGGCGCGTTCTTATTTTTCTTTACATACA
CGCACGCACACACTGCTACTGTACTTGTGAAGTGCCGGGTATACACAGGA
ATCCTACTTCCTAGCTCGATTATAGCTCTTATAGTACTCTTTTCTCACTT
CATCAGGATTGTCCTTGTACGAGGTTAGTGTCTAATCTGCTAAGAGTTCA
AACAAACAAACACAAGTAACCACACCGCTGTAAGGAGAAGGTCTCTCTGG
CTCTCCGGGTCATGTCGAGACAGGTTGTGCTCGCACGAAGTGGTATTCGT
TACCACTTGTTCTGAAACGTGTGCATATTGTTGAACACTTCCTGCCCCCG
CTCACGGAAAATCAGACTCTCGTTTCGCGCTGATGGGCACGGCCCAGACC
ACAAACTCGACTTGTAAATCCTGTAACTTCGCCCACCACTGCCGTCGTTT
CTATTAATACCAGGTACAGTATTGACGAAGAAACACTAGAAGATTGAACG
ATATTGTTAGCGACAGCCTAATCAACTACGCCTCTGCGTGCTATTTCCCT
TAATTCTGCATATAAACATATCACGCTTACTTTACGGTGCCTGCTCCGAA
AAGCAGGCGCCGCTACCGGCGTCACCCAAGGCATCCATCGTGCCGTGTTG
GACTGGTCGACAGGAATCATCGCCAAGCTCGCGGGAGCAATACCGCCTCG
TTCCGAAACAAAAACTAGAAGTCTCGCCGCCGTCGCCCCCGGGGGGACTG
GCAAAAGCAACATCAACGACAGGCACGCTAGGAACTCCCGGCGCTGGCTC
CTGGACCCCAGAATTTGGGAAGCGTTCGTTCGATCGCTTGAGGGGGCAGC
CGTGGCGACCGAGCCAACCACACACGTTCCACTTGCCGCGGGCGTCCCCG
TACTCCGCGCCGCCGTTCTCGCCGTTCGCGAGGCAGAGAGCGGCGGGCGA
GTGGACCAGGGCAAGGCCGAGAACGAAGATGACGACGGCAGTGCGATGGA
AGCGGTAGCGTCTGCAGGCGACTGGGCGTTTATTGCTATCCGTAAGCTTT
GCGGCGGCGACGACTCGGCAGGAAAAGGTCTTCCCATCGTCAAGGGTGCT
GCCCCTGGTGCACTCTCATCGCACACGGTGGGGGTGGGGGAGGGGCGAGG
CGGTGTCCTGGACCTAGACGAGACTGGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1218:114364..117641-

>mRNA_A-nodosum_M_contig1218.11.1 ID=mRNA_A-nodosum_M_contig1218.11.1|Name=mRNA_A-nodosum_M_contig1218.11.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=732bp|location=Sequence derived from alignment at A-nodosum_M_contig1218:114364..117641- (Ascophyllum nodosum dioecious)
ATGCGCGCTCGCGACATGATCGATGCGCTCGATAGGGTCTCCCTTTTCCG
AGCTCAGGCATTGAACTCGCATCGGCGCCTGGACGACATTGGAAGCGACC
TTGACGGGGCGATTTCGCTGCTCGATCTCCAACTACAGCAGTCTCCCGAC
AACGAAGCAGGCGCCGCTACCGGCGTCACCCAAGGCATCCATCGTGCCGT
GTTGGACTGGTCGACAGGAATCATCGCCAAGCTCGCGGGAGCAATACCGC
CTCGTTCCGAAACAAAAACTAGAAGTCTCGCCGCCGTCGCCCCCGGGGGG
ACTGGCAAAAGCAACATCAACGACAGGCACGCTAGGAACTCCCGGCGCTG
GCTCCTGGACCCCAGAATTTGGGAAGCGTTCGTTCGATCGCTTGAGGGGG
CAGCCGTGGCGACCGAGCCAACCACACACGTTCCACTTGCCGCGGGCGTC
CCCGTACTCCGCGCCGCCGTTCTCGCCGTTCGCGAGGCAGAGAGCGGCGG
GCGAGTGGACCAGGGCAAGGCCGAGAACGAAGATGACGACGGCAGTGCGA
TGGAAGCGGTAGCGTCTGCAGGCGACTGGGCGTTTATTGCTATCCGTAAG
CTTTGCGGCGGCGACGACTCGGCAGGAAAAGGTCTTCCCATCGTCAAGGG
TGCTGCCCCTGGTGCACTCTCATCGCACACGGTGGGGGTGGGGGAGGGGC
GAGGCGGTGTCCTGGACCTAGACGAGACTGGA
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