mRNA_A-nodosum_M_contig1217.2.2 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1217.2.2
Unique NamemRNA_A-nodosum_M_contig1217.2.2
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1217.2.2 vs. uniprot
Match: A0A6H5JGZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGZ7_9PHAE)

HSP 1 Score: 592 bits (1525), Expect = 1.700e-204
Identity = 311/554 (56.14%), Postives = 389/554 (70.22%), Query Frame = 1
Query:    1 RSNHTAEGRGLHNARTGQSASFTIHLVPQDEDP-----PNSVWN-IQQGTFFYVWIANEEQIFIAEVTNN--IDGTLTATYESDFPGRYLIYVEAVIIEKHDEGVPIVGSPFALTIAGD-PTVDIDSLPVCSTAQDEERT-PEAFWKPGTWISSRLASAKHGVARDGWVFQPKTCVHDAFSYDDLMLLASLE-ETTWLLVLGSSIQRGVFLTLVDMVLAQGQKDDMDSSVIAKCWGYADITVGNLRITYQDMRLSIANGMGNAVECNNEKLVSGSTSVFRRSAEGFLASSVFADGEAWPSVLFTPSFLV-FDGESPNNAIEVLLGGVPKTWQGKMIMVDHMTGLDSILETENPTRTALRDVGITKFCVMPSDRTGLGRMATYHQRDPRVTFMSPFPMYQAKLFENASTKRGIRRYGGSRHYHYIMSLDDV-ETYRGAMMVHSTITEMLSHIIIATAVGSKADLYEKAAAIQD-ISGKSAAARLSFKICTDCPAGLLPFHVKPVPEPVCETATSLQGDARVGNVWNNELCPDWCMATEPVGKTPTESGMVDVRVC 1620
            R+ HTA G GLH A  G  ASFTI LV  +        PN  W  I+   F YVWIANE+QI  AEV +    DGTLTATY+SDFPG Y +++E V + K  EGVPI+GSPF+LTIAGD PT++++SLPVCS+ +D      + FW+PGTW+SS +ASA HGV R+GWVFQPK+CV D FSY+DLMLLAS+  E TWLLVLG S++RGVFLTL+DMVLA GQK  + SSV+ KCWGYAD+ VGNLR+TYQDMRL       ++V CNNEKL S STS    SA  FLAS+VF DG  WP+++   S L+    E    ++EVL+  +P +W+GK+  VDHM GL +    ENPT TAL++VGI    + P D  GLG+M  Y  RDPRV+FMS FPMYQAKLFEN  ++ GIRR+ GS+H+HYI       ET  G +MVHSTITEML+++I+  AV +KA L+ KAAA +D I   S+    SF++C DCP  LLPFHVKP+PEPVCE   SL G A++G+VW+  LCPDWCM  EPV +  T+S +VDVR+C
Sbjct:   58 RAPHTASGDGLHKATVGMPASFTIQLVGDNLGDFHVLLPN--WERIRSRRFIYVWIANEDQILTAEVVDGGRKDGTLTATYKSDFPGNYSVHIEEVQLSKKGEGVPILGSPFSLTIAGDAPTLNVNSLPVCSSDEDANTDIADTFWRPGTWLSSNVASAAHGVMRNGWVFQPKSCVFDTFSYEDLMLLASIGGEPTWLLVLGGSVERGVFLTLIDMVLAAGQKQGIRSSVLNKCWGYADVRVGNLRLTYQDMRLFRFTISTDSVACNNEKLTSESTSALVHSAGQFLASTVFQDGGQWPTMMMAASRLIPTRAEHTQFSVEVLMDAMPPSWEGKLFFVDHMAGLGNYWTEENPTMTALKNVGIWFDRMSPDDDNGLGKMDGYQTRDPRVSFMSVFPMYQAKLFENEGSRNGIRRFAGSQHFHYISKETSAPETRNGTIMVHSTITEMLANVILGRAVETKASLHAKAAASKDEIQKLSSEVGKSFQVCWDCPGTLLPFHVKPIPEPVCEILESLPGGAKMGDVWSGSLCPDWCMKQEPVSQKNTQSDVVDVRMC 609          
BLAST of mRNA_A-nodosum_M_contig1217.2.2 vs. uniprot
Match: D7FXE0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE0_ECTSI)

HSP 1 Score: 585 bits (1507), Expect = 1.000e-202
Identity = 306/546 (56.04%), Postives = 386/546 (70.70%), Query Frame = 1
Query:   16 AEGRGLHNARTGQSASFTIHLVPQDEDPPNSVWNIQQGT---FFYVWIANEEQIFIAEVTNN--IDGTLTATYESDFPGRYLIYVEAVIIEKHDEGVPIVGSPFALTIAGD-PTVDIDSLPVCSTAQDEERTP--EAFWKPGTWISSRLASAKHGVARDGWVFQPKTCVHDAFSYDDLMLLASLE-ETTWLLVLGSSIQRGVFLTLVDMVLAQGQKDDMDSSVIAKCWGYADITVGNLRITYQDMRLSIANGMGNAVECNNEKLVSGSTSVFRRSAEGFLASSVFADGEAWPSVLFTPSFLVFDGESPNNAIEVLLGGVPKTWQGKMIMVDHMTGLDSILETENPTRTALRDVGITKFCVMPSDRTGLGRMATYHQRDPRVTFMSPFPMYQAKLFENASTKRGIRRYGGSRHYHYIMSL-DDVETYRGAMMVHSTITEMLSHIIIATAVGSKADLYEKAAAIQDISGKSAA-ARLSFKICTDCPAGLLPFHVKPVPEPVCETATSLQGDARVGNVWNNELCPDWCMATEPVGKTPTESGMVDVRVC 1620
            A G GLH A  G SASFTI LV  +     S+ + +  +   F YVWI++++QI IAEV  +   +GTLTATY+SDFPG YL++VE V   +  EG+PIVGSPF+L IAGD PT+D+ SLPVC + QD+  T   + FW+PGTW+S+ +ASA HGV R GWVFQPK+CV D FSY DLMLLAS + E TWL+V+G S+QRGVFLTLVDM LA GQKDDM +SV+ KCWGYAD+ VGNLR+TYQDMRL   +G  ++V CNNEKL SGSTS F  SA+ FLAS+VF DG  WP+ +  PS+LV + ++ N+ IEVL+  +P +W+GK++ VDHM G        NPTR AL+DV IT     P+D   L +M  Y  +DPRV+FMS FPMYQAKLFEN  +++GIR YG S HYHY+ S   D E + G  MVHST+TEML++I++  AV +KA+LY KAAA    S +  A    SF++C+DCP  +LP HVKP+PEPVCE   SL G+A  G VW+ ELCPDWCM   PV +  T+SG VDVR C
Sbjct:    2 ASGDGLHQATVGISASFTIQLVGDEVGGGGSLPDWEPNSSFRFIYVWISSKDQILIAEVVGDGSNNGTLTATYKSDFPGDYLVHVEEVQPSERGEGLPIVGSPFSLKIAGDFPTLDVHSLPVCGS-QDDGSTDIADTFWRPGTWLSANVASAAHGVMRTGWVFQPKSCVFDTFSYQDLMLLASPDGEPTWLVVVGGSVQRGVFLTLVDMALAAGQKDDMATSVLEKCWGYADLRVGNLRLTYQDMRLYQVSGKTDSVVCNNEKLTSGSTSAFVHSAKDFLASTVFRDGTQWPATILAPSYLVPE-KNVNHMIEVLMDSLPPSWEGKLLFVDHMAGFSIHWTQGNPTRAALKDVRITATGRTPTDDVALRKMDGYQTQDPRVSFMSAFPMYQAKLFENERSRQGIRHYGASIHYHYMSSTTSDPEAHNGTTMVHSTMTEMLANIMLGQAVETKAELYAKAAASTGGSEQERADVGKSFQVCSDCPRQMLPVHVKPIPEPVCEIVESLPGNAETGEVWDGELCPDWCMKQAPVSQKETQSGPVDVREC 545          
BLAST of mRNA_A-nodosum_M_contig1217.2.2 vs. uniprot
Match: D8LJ62_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ62_ECTSI)

HSP 1 Score: 555 bits (1431), Expect = 5.220e-190
Identity = 277/557 (49.73%), Postives = 375/557 (67.32%), Query Frame = 1
Query:   10 HTAEGRGLHNARTGQSASFTIHLV--------PQDEDPPNSVW--NIQQGTFFYVWIANEEQIFIAEVTNNIDGTLTATYESDFPGRYLIYVEAVIIEKHDE---GVPIVGSPFALTIAGDPTVDIDSLPVCSTAQDEERTPEAFWKPGTWISSRLASAKHGVARDGWVFQPKTCVHDAFSYDDLMLLASLEETTWLLVLGSSIQRGVFLTLVDMVLAQGQKDDMDSSVIAKCWGYADITVGNLRITYQDMRLSIANGMGNAVECNNEKLVSGSTSVFRRSAEGFLASSVFADGEAWPSVLFTPSFLVFDGESPNNAIEVLLGGVPKTWQGKMIMVDHMTGLDSILETENPTRTALRDVG-ITKFCVMPSDRTGLGRMATYHQRDPRVTFMSPFPMYQAKLFENASTKRGIRRYGGSRHYHYIMS-LDDVETYRGAMMVHSTITEMLSHIIIATAVGSKADLYEKAAA----IQDISGKSAAARLSFKICTDCPAGLLPFHVKPVPEPVCETATSLQGDARVGNVWNNELCPDWCMATEPVGKTPTESGMVDVRVCK 1623
            HTA G GL +A TG  ASFTI L         P+ +   N  W  N+ +  F YVW+A+E+ +F+A V NN +GTLTA YES FPG YL++VE V ++  D    G PI+GSPF+LT++GDP VD+D+LPVC    +EE    ++W+ G+W+SS +A+  HGV RDGWVFQPKTCV++AFSYDDLMLLA L+E  WLL LG+SI RG+FLT++DM LAQGQKD+  +SV+ KCWG+ DI +GNLRI+YQD+RL   + + +A  CN+EKL SGST+ +  SAE FL  ++F + + WPSV++ PS ++   E+PN  I VL+  +P +W+G ++M+D + G      T NPT   L  V  + +F     D +GL RM  Y QRDPRVTFMS FPMYQ +LFEN  ++ G R YG S HYHY+    +  E Y GA MVHS +TEML++++I  AVG+KA L E+A      +   + +  A   +F++CTDCPA L+P HVKP P   C+T ++L G+A VG  W++E CPDWCMA EP  +    +G+VDVRVC+
Sbjct:   70 HTAAGPGLRSASTGVPASFTIRLAGVDASGARPEQQGEKNPDWDYNVDKKRFIYVWVASEDNVFVAGVRNNGNGTLTAAYESSFPGDYLVHVEDVNLKVQDHFGRGRPIIGSPFSLTVSGDPAVDVDALPVCGGEGEEEDLASSYWRTGSWVSSNIAARNHGVLRDGWVFQPKTCVYEAFSYDDLMLLAGLDEPAWLLALGNSILRGIFLTILDMALAQGQKDEFSTSVVKKCWGFIDIRIGNLRISYQDLRLYTVSSVDDATVCNDEKLASGSTAAYVSSAELFLQDTIFRENKPWPSVIWAPSNMIDSDEAPNLQISVLMDALPSSWRGTLVMLDQLYGYGYGWNTGNPTLATLSGVKPVNEFSPATRD-SGLERMERYRQRDPRVTFMSAFPMYQGRLFENEESRIGERCYGCSIHYHYVSDDPNSPEAYGGAKMVHSAVTEMLANVLITRAVGTKAALRERAGTHSSDVTSTAEERQADTRTFELCTDCPATLIPLHVKPSPLLKCDTVSALPGNATVGKAWDDERCPDWCMAREPDRQASKGTGLVDVRVCE 625          
BLAST of mRNA_A-nodosum_M_contig1217.2.2 vs. uniprot
Match: A0A6H5K8P1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8P1_9PHAE)

HSP 1 Score: 519 bits (1336), Expect = 1.000e-175
Identity = 296/622 (47.59%), Postives = 372/622 (59.81%), Query Frame = 1
Query:   61 SFTIHLVPQDEDPPNSVWNIQQGT---FFYVWIANEEQIFIAEVTNN--IDGTLTATYESDFPGRYLIYVEAVIIEKHDEGVPIVGSPFALTIAGD-PTVDIDSLPVCSTAQDEERT-PEAFWKPGTWISSRLASAKHGVARDGWVFQPKTCVHDAFSYDDLMLLASLE-ETTWLLVLGSSIQRGVFLTLVDMVLAQGQKDDMDSSVIAKCWGYADITVGNLRITYQDMRLSIANGMGNAVECNNEKLVSGSTSVFRRSAEGFLASSVFADGEAWPSVLFTPSFLVFDGESPNNAIE------------VLLGGVPKTWQGKMIMVDHMTGLDSILETENPTRTALRDVGITKFCVMPSDRTGLGRMATYHQRDPRVTFMSPFPMYQAK--LFENASTKRGIRRYGGSRHYHYIMSL-DDVETYRGAMMVHSTITEML------------------------------------------------------------------------------SHIIIATAVGSKADLYEKAAAIQDISGK-SAAARLSFKICTDCPAGLLPFHVKPVPEPVCETATSLQGDARVGNVWNNELCPDWCMATEPVGKTPTESGMVDVRVC 1620
            SFTI LV  +     S+ + +  +   F YVWI +++QI IAEV  +   +GTLTATY+SDFPG YL++VE V   K  EG+PIVGSPF+LTI GD PT+D+DSLPVC +  D      + FW+PGTW+SS +ASA HGV R+GWVFQPK+CV D FSY DLMLLASL+ E TWL+V+G S+QRGVFLTLVDM LA GQKDDM +SV+ KCWGYAD+ VGNLR+TYQDMRL   +G  ++V CNNEKL SGST+ F  SA+ FLAS+ F DG  WP+ +  PS+LV +  + N  IE            VL+  +P +W+GK++ VDHM G        NPTRTAL DV IT     P+D   L +M  Y  +DPRV+F+S FP+  A+  LFEN  +++GIR YG S HYHY+ S   D E + G  MVHST+TEML                                                                              S I+I  AV +KA+L+ KAAA  + S + S     SF++C+DCP  LLP HVKP+PEPVCET  SL G+A  G VW+ ELCPDWCM   PV +  T+SG VDVR C
Sbjct:    2 SFTIELVGDEIGGGGSLPDWEPNSSFRFIYVWICSKDQILIAEVVGDGSNNGTLTATYQSDFPGDYLVHVEEVQPSKRGEGLPIVGSPFSLTITGDGPTLDVDSLPVCGSQDDGSNDIADTFWRPGTWLSSNVASAAHGVMRNGWVFQPKSCVFDTFSYQDLMLLASLDGEPTWLVVVGGSVQRGVFLTLVDMALAAGQKDDMATSVLQKCWGYADLRVGNLRLTYQDMRLYQVSGKTDSVVCNNEKLTSGSTAAFVHSAKEFLASTAFRDGTQWPATILAPSYLVPEN-NVNQMIEAYIRPASCAHAQVLMDSLPPSWEGKLLFVDHMAGFRIHWTQGNPTRTALMDVRITATGRTPTDDFALRKMDGYQTQDPRVSFISAFPVSFAERNLFENERSRQGIRHYGASIHYHYVSSTTSDPEAHNGTTMVHSTMTEMLANVSRRRVLTGTKAVSPRHFFVVSGFRDQQRKAGIEGEMLLVSKRTCWDRLQCPCTAEPKPPDAPFVFCRATFLYKSYSQIMIGRAVETKAELHAKAAASTEGSEQQSVDVGKSFQVCSDCPRQLLPAHVKPIPEPVCETVESLPGNAETGEVWDGELCPDWCMKQAPVSQKETQSGPVDVREC 622          
BLAST of mRNA_A-nodosum_M_contig1217.2.2 vs. uniprot
Match: D8LHZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHZ4_ECTSI)

HSP 1 Score: 512 bits (1318), Expect = 2.850e-174
Identity = 282/551 (51.18%), Postives = 344/551 (62.43%), Query Frame = 1
Query:    1 RSNHTAEGRGLHNARTGQSASFTIHLVPQDEDPPNSVWNIQQGT-FFYVWIANEEQIFIAEVTN--NIDGTLTATYESDFPGRYLIYVEAVIIEKHDEGVPIVGSPFALTIAGD-PTVDIDSLPVCSTAQDEERT-PEAFWKPGTWISSRLASAKHGVARDGWVFQPKTCVHDAFSYDDLMLLASLE-ETTWLLVLGSSIQRGVFLTLVDMVLAQGQKDDMDSSVIAKCWGYADITVGNLRITYQDMRLSIANGMGNAVECNNEKLVSGSTSVFRRSAEGFLASSVFADGEAWPSVLFTPSFLVFDGESPNNAIEVLLGGVPKTWQGKMIMVDHMTGLDSILETENPTRTALRDVGITKFCVMPSDRTGLGRMATYHQRDPRVTFMSPFPMYQAKLFENASTKRGI---RRYGGSRHYHYIMS-LDDVETYRGAMMVHSTITEMLSHIIIATAVGSKADLYEKAAAIQD-ISGKSAAARLSFKICTDCPAGLLPFHVKPVPEPVCETATSLQGDARVGNVWNNELCPDWCMATEPVGKTPTESGMVDVRVC 1620
            R+ HTA G GLH A  G+ ASFTI LV  D+      W     T F YVWIAN++QI IAEV +  + +GTLTATY+SDFPG YL+Y++ V   K DEGVPI+GSPF+LTIAGD PT+DI+SLPVCST +D  +   + FW+ GTW+SS +ASA HGV R+GWVFQPK+CV D FSY+DLMLLASL+ E TWLLVLG S+QRGVFLTLVDMVLA GQK D+ SSVI KCWGYAD+ VGN R+TYQ                                                                      VL+G +P +W+GK+  VDHM G + + + +NPT T L DV I      P D  GLG+M  Y  RDPRV+FMS FPMYQAKLFEN  +  GI   RR+  S H+HY+ S     ET  G +MVHSTITEML++++I  AV +KA LY KAAA  D I   SA    SF++C+DCP+ LLPFHVK +PE VCE   SL G A+ G VW   LCPDWCM   P+ ++ TESG+V+VR C
Sbjct:   55 RAPHTASGDGLHKATVGRPASFTIQLVG-DQLGSLPDWKPNTSTRFIYVWIANKDQILIAEVVDGGSKNGTLTATYKSDFPGDYLVYIDEVESSKKDEGVPILGSPFSLTIAGDAPTLDINSLPVCSTHEDANKDIADTFWRSGTWLSSNVASAAHGVMRNGWVFQPKSCVFDTFSYEDLMLLASLDGEPTWLLVLGGSVQRGVFLTLVDMVLAAGQKHDIRSSVIQKCWGYADVRVGNFRLTYQ----------------------------------------------------------------------VLMGALPPSWEGKLSFVDHMAGFEILWKEDNPTMTDLEDVRIWHLGSSPDDDNGLGKMEGYETRDPRVSFMSVFPMYQAKLFENEESNNGINGVRRFAASHHFHYVSSDASAPETRNGTIMVHSTITEMLANVMIGRAVETKAKLYAKAAASTDEIRKMSAEVGKSFQVCSDCPSALLPFHVKAIPESVCEIVESLPGHAKTGEVWAGSLCPDWCMKQAPMSQSKTESGVVEVRRC 534          
BLAST of mRNA_A-nodosum_M_contig1217.2.2 vs. uniprot
Match: A0A6H5K539_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K539_9PHAE)

HSP 1 Score: 501 bits (1290), Expect = 1.720e-170
Identity = 276/551 (50.09%), Postives = 343/551 (62.25%), Query Frame = 1
Query:    1 RSNHTAEGRGLHNARTGQSASFTIHLVPQDEDPPNSVWNIQQGT-FFYVWIANEEQ--IFIAEVTN--NIDGTLTATYESDFPGRYLIYVEAVIIEKHDEGVPIVGSPFALTIAGD-PTVDIDSLPVCSTAQDEERT-PEAFWKPGTWISSRLASAKHGVARDGWVFQPKTCVHDAFSYDDLMLLASLE-ETTWLLVLGSSIQRGVFLTLVDMVLAQGQKDDMDSSVIAKCWGYADITVGNLRITYQDMRLSIANGMGNAVECNNEKLVSGSTSVFRRSAEGFLASSVFADGEAWPSVLFTPSFLVFDGESPNNAIEVLLGGVPKTWQGKMIMVDHMTGLDSILETENPTRTALRDVGITKFCVMPSDRTGLGRMATYHQRDPRVTFMSPFPMYQAKLFENASTKRGIRRYGGSRHYHYIMS-LDDVETYRGAMMVHSTITEMLSHIIIATAVGSKADLYEKAAAIQD-ISGKSAAARLSFKICTDCPAGLLPFHVKPVPEPVCETATSLQGDARVGNVWNNELCPDWCMATEPVGKTPTESGMVDVRVCK 1623
            R++HTA G GLH A  G+SASFTI LV  D+      W     T F YVWIAN++Q  I IAEV +  + +GTLTATY+SDFPG YL+Y++ V   K DEGVPI+GSPF+LTIAGD PT+D++SLPVCST +D  +  P+ FW+ GTW+SS +ASA HGV R+GWVFQPK+CV D FSY+DLMLLASL+ E TWLLVLG S+QRGVFLTL+DMVLA GQK D+ SSV+ KCWGYAD+ VGNLR+TYQ                                                                      VL+  +P +W+GK+  VDHM G   + E ENPT TAL DV +      P D  GLG+M  Y  RDPR        MYQAKLFEN  +K GIRR+  S+H+HY+ S     ET  G +MVHSTITEML++++I  AV +KA LY KAAA  D I   +A    +F++C+DCP+ LLPFHVK +PE VCE   SL GDA+ G  W   LCPDWCM   PV ++ T+SG+V+VR C+
Sbjct:   36 RASHTASGDGLHKATVGRSASFTIQLVG-DQLGSLPDWKPNSSTRFIYVWIANKDQDEILIAEVADGGSKNGTLTATYKSDFPGDYLVYIDEVESSKKDEGVPILGSPFSLTIAGDAPTLDVNSLPVCSTHEDTNKDIPDTFWRSGTWLSSNVASAAHGVMRNGWVFQPKSCVFDTFSYEDLMLLASLDGEPTWLLVLGGSVQRGVFLTLIDMVLAAGQKHDIQSSVVQKCWGYADVRVGNLRLTYQ----------------------------------------------------------------------VLMDALPPSWEGKLSFVDHMAGFGIMWEEENPTMTALEDVRMWYLSSSPDDDNGLGKMDAYETRDPR--------MYQAKLFENEQSKNGIRRFAVSQHFHYVSSDASGPETRNGTIMVHSTITEMLANVMIGRAVETKAKLYAKAAASTDEIRKMNAEFGKAFQVCSDCPSALLPFHVKAIPESVCEIVQSLPGDAKTGEAWPGSLCPDWCMKQAPVSQSTTQSGVVEVRWCR 507          
BLAST of mRNA_A-nodosum_M_contig1217.2.2 vs. uniprot
Match: A0A6H5JGW9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGW9_9PHAE)

HSP 1 Score: 497 bits (1279), Expect = 3.140e-168
Identity = 277/557 (49.73%), Postives = 351/557 (63.02%), Query Frame = 1
Query:  163 QIFIAEVTNN--IDGTLTATYESDFPGRYLIYVEAVIIEKHDEGVPIVGSPFALTIAGD-PTVDIDSLPVCSTAQDEERT-PEAFWKPGTWISSRLASAKHGVARDGWVFQPKTCVHDAFSYDDLMLLASLE-ETTWLLVLGSSIQRGVFLTLVDMVLAQGQKDDMDSSVIAKCWGYADITVGNLRITYQD----------------------------------------MRLSIAN-GMGNAVE---CNNEKLVSGSTSVFRRSAEGFLASSVFADGEAWPSVLFTPSFLVFDGESPNNAIEVLLGGVPKTWQGKMIMVDHMTGLDSILETENPTRTALRDVGITKFCVMPSDRTGLGRMATYHQRDPRVTFMSPFPMYQAKLFENASTKRGIRRYGGSRHYHYIMS-LDDVETYRGAMMVHSTITEMLSHIIIATAVGSKADLYEKAAAIQDIS-------GKSAAARLSFK-----------ICTDCPAGLLPFHVKPVPEPVCETATSLQGDARVGNVWNNELCPDWCMATEPVGKTPTESGMVDVRVCKED 1629
            QI IAEV ++   +GTLTATY+SDFPG YL+Y++ V   K DEGVPI+GSPF+LTIAGD PT+D++SLPVCST  D  +   + FW+ GTW+SS +ASA HGV R+GWVFQPK+CV D FSY+DLMLLASL+ E TWLLVLG S+QRGVFLTL+DMVLA GQK+D+ SSV+ KCWGYAD+ VGNLR+TYQ+                                        M L   N G+ N+V+   CNNEKL+SGST+ F  SAE FLAS++F +G  WP+V+  PS L+                 P   +G    V+ +     + + ENPT TAL DV ++     P D  GLG+M  Y  RDPRV+FMS FPMYQAKLFEN  +K GIRR+  S+H+HY+ S     ET  G +MVHSTITEML++++I  AV +KA LY KAAA  D         GKS  A+   +           +C+DCP+ LLPFHVK +PE VCE   SL G A+ G  W  +LCPDWCM   PV ++ TESG+V+VR C+ +
Sbjct:   13 QILIAEVADDGSKNGTLTATYKSDFPGDYLVYIDEVESSKKDEGVPILGSPFSLTIAGDAPTLDVNSLPVCSTHDDANKNIADTFWRSGTWLSSSVASAAHGVMRNGWVFQPKSCVFDTFSYEDLMLLASLDGEPTWLLVLGGSVQRGVFLTLIDMVLAAGQKNDIQSSVVQKCWGYADVRVGNLRLTYQEAVTDGLGRELAISALEWRQFHRELCWLRQLLFHNEAETNIMLLFFTNAGLSNSVDSLVCNNEKLMSGSTAAFIHSAEQFLASTIFREGGPWPTVVMAPSNLI-----------------PSNNEGTQFSVEEV-----LWKEENPTMTALEDVRMSYLSRSPDDDNGLGKMDGYETRDPRVSFMSVFPMYQAKLFENEQSKNGIRRFAVSQHFHYVSSDASGPETRNGTIMVHSTITEMLANVMIGRAVETKAKLYAKAAASTDEIRKMNAEVGKSFQAKAGTRRNGQFQREFVTVCSDCPSSLLPFHVKAIPESVCEIVESLPGHAKTGEAWPGDLCPDWCMKQAPVSQSKTESGVVEVRRCRRN 547          
BLAST of mRNA_A-nodosum_M_contig1217.2.2 vs. uniprot
Match: D7FXD9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXD9_ECTSI)

HSP 1 Score: 472 bits (1215), Expect = 9.780e-159
Identity = 266/555 (47.93%), Postives = 332/555 (59.82%), Query Frame = 1
Query:   10 HTAEGRGLHNARTGQSASFTIHLVPQD------EDPPNSVWNIQQGT-FFYVWIANEEQIFIAEVTNNID-GTLTATYESDFPGRYLIYVEAVIIEKHDEGVPIVGSPFALTIAGD-PTVDIDSLPVCSTAQDEERT-PEAFWKPGTWISSRLASAKHGVARDGWVFQPKTCVHDAFSYDDLMLLASLE-ETTWLLVLGSSIQRGVFLTLVDMVLAQGQKDDMDSSVIAKCWGYADITVGNLRITYQDMRLSIANGMGNAVECNNEKLVSGSTSVFRRSAEGFLASSVFADGEAWPSVLFTPSFLVFDGESPNNAIEVLLGGVPKTWQGKMIMVDHMTGLDSILETENPTRTALRDVGIT-----KFCVMPSDRTGLGRMATYHQRDPRVTFMSPFPMYQAKLFENASTKRGIRRYGGSRHYHYIMSL-DDVETYRGAMMVHSTITEMLSHIIIATAVGSKADLYEKAAAIQDISGKSAA-ARLSFKICTDCPAGLLPFHVKPVPEPVCETATSLQGDARVGNVWNNELCPDWCMATEPVGKTPTESGMVDVRVC 1620
            HTA G GLH A  G SASFTI LV  +         PN  W     + F YVWI+NE+QI IAE+  + + GTLTATY+SDFPG YL+YVE V   +  EG+PIVGSPF+L IAGD PT+D++SLPVC + +D      + FW+PGTW+SS +ASA HGV R+GWVFQPK+CV D FSY DLMLLASL+ E TWL+V+G S+QRGVFLTLVDMVLA GQKDD+ +S + KCWGY D+ VGNLR+TYQD+                                             W           ++G                                      NPT  AL DV I           P D + L +M  Y  RD RV+FMS FPMYQAK FEN  +K+G RRYGG+ HYHYI S   + E + G++MVHST+TEML++++I  AV +KA L+ KAAA  D++ +  A    SF++C+DCP  L+PFHVKP+P+P+CETA SL+GDA+VG VWN ELCPDWCM   PV +  T+SG VDVR C
Sbjct:   73 HTASGDGLHEATVGISASFTIQLVGDNLGGSGGSSLPN--WEPNSSSRFIYVWISNEDQILIAEIVGDGNTGTLTATYKSDFPGDYLVYVEEVQPSEQGEGLPIVGSPFSLKIAGDFPTLDVNSLPVCDSQEDGSNDIADTFWRPGTWLSSNVASAAHGVMRNGWVFQPKSCVFDTFSYQDLMLLASLDGEPTWLVVVGGSVQRGVFLTLVDMVLAAGQKDDIATSTLGKCWGYTDLLVGNLRLTYQDVY--------------------------------------------W-----------YEG--------------------------------------NPTMAALEDVSIAFTGGRASRRPPFDGSALSKMDGYQARDSRVSFMSAFPMYQAKFFENEGSKQGTRRYGGNIHYHYISSAASNPEAHNGSIMVHSTMTEMLANVMIGRAVETKAALFAKAAASTDVNKQERADVGKSFQVCSDCPRDLMPFHVKPIPDPICETAESLRGDAQVGEVWNGELCPDWCMKQAPVSQLATQSGPVDVREC 532          
BLAST of mRNA_A-nodosum_M_contig1217.2.2 vs. uniprot
Match: D7FLN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLN2_ECTSI)

HSP 1 Score: 408 bits (1049), Expect = 7.960e-135
Identity = 225/512 (43.95%), Postives = 292/512 (57.03%), Query Frame = 1
Query:  133 FFYVWIANEEQIFIAEVTNNIDGTLTATYESDFPGRYLIYVEAVIIEKH----------DEGVPIVGSPFALTIAGDPTVDIDSLPVCSTAQDEERTPEAFWKPGTWISSRLASAKHGVARDGWVFQPKTCVHDAFSYDDLMLLAS-LEETTWLLVLGSSIQRGVFLTLVDMVLAQGQKDDMDSSVIAKCWGYADITVGNLRITYQDMRL-SIANGMGNAVECNNEKLVSGSTSVFRRSAEGFLASSVFADGEAWPSVLFTPSFLVFDGESPNNAIEVLLGGVPKTWQGKMIMVDHMTGLDSILETENPTRTALRDVG----ITKFCVMPSDRTGLGRMATYHQRDPRVTFMSPFPMYQAKLFENASTKRGIRRYGGSRHYHYIMSLDDVETYRGAMMVHSTITEMLSHIIIATAVGSKADLYEKAAAIQDISGKSAAARLSFKICTDCPAGLLPFHVKPVPEPVCETATSLQGDARVGNVWNNELCPDWCMATEPVGKTPTESGMVDVRVC 1620
            F YVWIA+ + +  A V +N DGTLTATYES +PG YL++V+ V  +            +    IV SPF LTI+G+  VD+D LP+C     +E   + FW+ G+WISS+ ASAKHGV RDGWVFQPKTCVHD FSYDDLMLLA+  +E TWLL+LG+S+QRGVFLTLVDMVLAQGQK D  +S I KCWG+A++ VGNLR+TYQD+RL  +     ++  C+++KL   + +VF  +A  FL  SVFA G+ WPSV+  P F+    E+ N  I V++  +P  W G ++M++HM GL      +NPT   L +V     ++KF  + +   GLGR+  Y Q+D R  FMS FP                                                     I+I+ AVGSKA LYEKA      +         F++CTDCPA L+P HVKPVP PVC   + L GDA VG  W    CP WC + EPV        + DVRVC
Sbjct:    6 FVYVWIASTDHVLHAAVVDNGDGTLTATYESPYPGDYLVHVQDVCTDMSVVGRGKKRPGERAKAIVDSPFRLTISGEIAVDVDDLPLCDAEHPQEDEEDTFWRTGSWISSKFASAKHGVLRDGWVFQPKTCVHDTFSYDDLMLLATGSKEPTWLLILGTSVQRGVFLTLVDMVLAQGQKSDFATSAIQKCWGFAEVRVGNLRLTYQDLRLHEVGLAQDDSAVCHDDKLAINNVAVFVAAARRFLRRSVFAAGKQWPSVIMAPPFMEDSDEAANLPITVIMDALPSAWNGTLLMMEHMAGLGFTYNYDNPTAATLAEVNPTWHLSKFIGVDN---GLGRIKRYQQQDARTKFMSTFP-----------------------------------------------------IVISKAVGSKAALYEKAT--PSTNTHRGGGNEIFEVCTDCPASLIPHHVKPVPVPVCNATSVLAGDAAVGEAWGGRGCPQWC-SKEPVDGV---LNLKDVRVC 455          
BLAST of mRNA_A-nodosum_M_contig1217.2.2 vs. uniprot
Match: D7G348_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G348_ECTSI)

HSP 1 Score: 375 bits (962), Expect = 2.800e-122
Identity = 222/523 (42.45%), Postives = 281/523 (53.73%), Query Frame = 1
Query:   76 LVPQDED---PPNSVWNIQQGTFFYVWIANEEQIFIAEVTNN--IDGTLTATYESDFPGRYLIYVEAVIIEKHDEGVPIVGSPFALTIAGDPTVDIDSLPVCSTAQDEERTPEAFWKPGTWISSRLASAKHGVARDGWVFQPKTCVHDAFSYDDLMLLASLE-ETTWLLVLGSSIQRGVFLTLVDMVLAQGQKDDMDSSVIAKCWGYADITVGNLRITYQDMRLSIANGMGNAVECNNEKLVSGSTSVFRRSAEGFLASSVFADGEAWPSVLFTPSFLVFDGESPNNAIEVLLGGVPKTWQGKMIMVDHMTGLDSILETENPTRTALRDVGITKFCVMPSDRTGLGRMATYHQRDPRVTFMSPFPMYQAKLFENASTKRGIRRYGGSRHYHYIMS-LDDVETYRGAMMVHSTITEMLSHIIIATAVGSKADLYEKAAAIQDISGK-SAAARLSFKICTDCPAGLLPFHVKPVPEPVCETATSLQGDARVGNVWNNELCPDWCMATEPVGKTPTESGMVDVRVC 1620
            L  QD+    PP    N+ +G+       + EQI IAEV ++   +GTLTATY+SDFPG Y +Y++ V + + D    I                                 + FW+PGTW+SS +ASA HGV R+GWVFQP +CV D FSY+DLMLLASL+ E TWLLVLG S+QRGVFLTL+DMVLA GQK+D+ SSV+ KCWGYAD+ VGNLR+TYQ                                            G  W                                                   ENPT TAL+ VGI      P+D  GLG+M  Y  RD RV+FMS FPMYQAKLFEN  ++ G+RR+  S+H+H++ +     ET  G +MVHSTITEML+++++  AV +KA LY KAAA  D   K SA    SF++C+DCP  LLPFHVK +PEPVC+   SL G A+ G VW+ +LCPDWCM   PV +T TES +V VR C
Sbjct:   20 LAAQDDPRVAPPAVTVNVDRGSQDK---PDNEQILIAEVVDDGSKNGTLTATYKSDFPGTYWVYIDEVELSRKDANNDIA--------------------------------DTFWRPGTWLSSNVASAAHGVLRNGWVFQPISCVLDTFSYEDLMLLASLDKEPTWLLVLGGSVQRGVFLTLIDMVLAAGQKNDIISSVLRKCWGYADVQVGNLRLTYQ--------------------------------------------GCYWTE-------------------------------------------------ENPTMTALKGVGIRFGGRWPNDDNGLGKMDGYQTRDSRVSFMSVFPMYQAKLFENQKSRNGLRRFAASQHFHFVSTDASAPETRNGTIMVHSTITEMLANVMVGRAVETKAKLYAKAAASTDEIRKISAEVGKSFQVCSDCPGSLLPFHVKGIPEPVCDIVESLPGQAKTGEVWSGDLCPDWCMKQAPVSQTKTESDVVKVREC 414          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1217.2.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A6H5JGZ7_9PHAE1.700e-20456.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXE0_ECTSI1.000e-20256.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LJ62_ECTSI5.220e-19049.73Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5K8P1_9PHAE1.000e-17547.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHZ4_ECTSI2.850e-17451.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K539_9PHAE1.720e-17050.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGW9_9PHAE3.140e-16849.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXD9_ECTSI9.780e-15947.93Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FLN2_ECTSI7.960e-13543.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G348_ECTSI2.800e-12242.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1217contigA-nodosum_M_contig1217:208857..218954 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FXE0
Model size1635
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons7
Evalue1.65e-203
EggNOG OGs2E5RD@1|root,2SCI8@2759|Eukaryota
Cds size1635
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1217.2.2prot_A-nodosum_M_contig1217.2.2Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1217 208857..218954 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866641.3018606-CDS-A-nodosum_M_contig1217:208856..2090751680866641.3018606-CDS-A-nodosum_M_contig1217:208856..209075Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1217 208857..209075 -
1680866641.311556-CDS-A-nodosum_M_contig1217:209557..2096621680866641.311556-CDS-A-nodosum_M_contig1217:209557..209662Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1217 209558..209662 -
1680866641.3224652-CDS-A-nodosum_M_contig1217:216176..2163351680866641.3224652-CDS-A-nodosum_M_contig1217:216176..216335Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1217 216177..216335 -
1680866641.331035-CDS-A-nodosum_M_contig1217:216653..2168091680866641.331035-CDS-A-nodosum_M_contig1217:216653..216809Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1217 216654..216809 -
1680866641.3395336-CDS-A-nodosum_M_contig1217:217034..2171031680866641.3395336-CDS-A-nodosum_M_contig1217:217034..217103Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1217 217035..217103 -
1680866641.3504095-CDS-A-nodosum_M_contig1217:217489..2176991680866641.3504095-CDS-A-nodosum_M_contig1217:217489..217699Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1217 217490..217699 -
1680866641.3600578-CDS-A-nodosum_M_contig1217:218237..2189541680866641.3600578-CDS-A-nodosum_M_contig1217:218237..218954Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1217 218238..218954 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1217.2.2

>prot_A-nodosum_M_contig1217.2.2 ID=prot_A-nodosum_M_contig1217.2.2|Name=mRNA_A-nodosum_M_contig1217.2.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=545bp
RSNHTAEGRGLHNARTGQSASFTIHLVPQDEDPPNSVWNIQQGTFFYVWI
ANEEQIFIAEVTNNIDGTLTATYESDFPGRYLIYVEAVIIEKHDEGVPIV
GSPFALTIAGDPTVDIDSLPVCSTAQDEERTPEAFWKPGTWISSRLASAK
HGVARDGWVFQPKTCVHDAFSYDDLMLLASLEETTWLLVLGSSIQRGVFL
TLVDMVLAQGQKDDMDSSVIAKCWGYADITVGNLRITYQDMRLSIANGMG
NAVECNNEKLVSGSTSVFRRSAEGFLASSVFADGEAWPSVLFTPSFLVFD
GESPNNAIEVLLGGVPKTWQGKMIMVDHMTGLDSILETENPTRTALRDVG
ITKFCVMPSDRTGLGRMATYHQRDPRVTFMSPFPMYQAKLFENASTKRGI
RRYGGSRHYHYIMSLDDVETYRGAMMVHSTITEMLSHIIIATAVGSKADL
YEKAAAIQDISGKSAAARLSFKICTDCPAGLLPFHVKPVPEPVCETATSL
QGDARVGNVWNNELCPDWCMATEPVGKTPTESGMVDVRVCKEDG*
back to top

mRNA from alignment at A-nodosum_M_contig1217:208857..218954-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1217.2.2 ID=mRNA_A-nodosum_M_contig1217.2.2|Name=mRNA_A-nodosum_M_contig1217.2.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=10098bp|location=Sequence derived from alignment at A-nodosum_M_contig1217:208857..218954- (Ascophyllum nodosum dioecious)
AGATCCAACCATACAGCCGAAGGGAGAGGACTTCATAACGCTAGGACCGG CCAGTCAGCGTCGTTTACGATTCATCTGGTCCCTCAGGATGAAGATCCTC CAAATAGCGTTTGGAATATTCAACAAGGGACATTCTTCTACGTCTGGATA GCAAATGAGGAGCAGATTTTCATTGCGGAAGTAACCAACAATATAGATGG AACACTCACCGCCACCTATGAGAGCGATTTTCCCGGACGGTACCTTATTT ACGTTGAAGCTGTTATTATCGAAAAGCACGACGAAGGTGTGCCCATTGTT GGTAGCCCGTTTGCTTTGACAATTGCTGGTGATCCGACGGTCGACATCGA CAGTTTACCAGTATGTAGTACAGCACAAGACGAAGAGCGTACCCCCGAGG CCTTTTGGAAACCGGGCACGTGGATCTCTTCAAGGCTTGCTAGCGCAAAG CATGGCGTAGCCAGGGATGGTTGGGTCTTCCAGCCAAAGACTTGTGTCCA CGACGCATTCTCTTACGATGACCTCATGTTGCTGGCTAGCCTGGAAGAGA CGACATGGTTGCTGGTCTTAGGTTCGTCAATTCAACGGGGCGTATTTTTA ACGTTAGTGGACATGGTTCTGGCCCAAGGGCAGAAGGATGATATGGACTC GAGTGTGATCGCGAAGTGCTGGGGCTATGCAGACATCACCGTGGGGAATC TTCGCATCACCTACCAGGTAGGCTATACAGAGGTGTTTAAGCACATGTAA CAATGTTTTGGCGAGATTAAGAACGGTGGTTTATTAAAGAACGGAATCTT ATTTCTTCTTAACGTTTGAACCTCTGGATGGATTTGATCTGCTGATAGCT CAAACGAAAGCCCTTGCTTGGTGGCGCAGTCACAGAAATACCTTGTTCAG AAGTGGGCGAGATGCCTACCAACAGTTCTAAAATGCATCTAACGTTGATT CTGGTGAACAGCGCTGTTCGCCATAATTGTGGGAAATCCGAGAAAATGCT GTCACAGTCCCATACATTGATGGATCGAGTCGGTGGTGGAATGGAATTCT TGCTCTTAACACGGCCTTTCGTTTGAGCTATCGGGGGATCGAATTCGCCC AGCGAGTTGAACAAAAATAAAACATAAGCTCCCGTTCTTGAAAAAAACGC CGTTCTTAATCTCTTCAAAACATTATTATGTCCGGATATAGCCCCTGTCA TCGAGTAATGCTCCATGATTTTGTTTGGTCGTTTCGTTTTTGTCCACCGA CGCAGGATATGCGTCTATCTATAGCGAATGGGATGGGAAACGCTGTGGAG TGCAATAACGAGAAGCTCGTCAGTGGAAGCACCTCCGTATTTCGTCGTTC AGCCGAAGGATTTTTGGCGTCGTCCGTATTTGCGGATGGGGAAGCGTGGC CCAGTGTCCTTTTTACTCCTTCTTTTCTTGTTTTTGATGGCGAATCCCCG AACAATGCTATAGAGGTACGATGCGAACAACTAGCACTACAATAAATCCA CACTCTTAATGCAATTACCCGTATTATAGACCAAAGCGATGCTAAAAATC GCCGATGCAAGTTCCTCGGTTCTAGAAATCACCCTTATATACTTCCGTCG AGAGTTTTTCAGAAGAATGAAACTACAAAGCCATTTACACCATTTGGAAA TACTTGGAGCATATTGTGTTGTGGTGTTTGCGTCATCGATCAGGAGAGGA GTTAGCTGCAACTGATCCATCTGTGATGTGACCATGCCTGGCCTCGCACA TTTCCGGGTTAATTTATTGCGTGGGGCGCTGACGACCAAACCGAAACCCA TTATTTTCCGAACATTCGCCCACTGGCCGTACGGACGCCTGTCTACGTCA GGTGCTACTCGGTGGGGTTCCGAAAACATGGCAAGGAAAAATGATTATGG TTGACCACATGACCGGCTTGGTGAGTCCACCTTGGTATAGTTTCCTGATG CTTCACGATGTTGACATGCACGACAAACGCTGAACCTCTACCGAAAAACG AGCCATTTATGTCGTTATATACAACTCAGGCCAACAAGAATATACCACGC ACAGTAACGGGGCAAGTCTGTGTATAAAACGGCATTGACAAAATTTGTAC AGTTATTTATGCTCGTGTCAATCATTTCGCGTGTTGCGCGATCAGGACAG CATTTTGGAGACGGAAAATCCAACAAGAACCGCATTGAGAGACGTAGGCA TAACAAAATTTTGCGTGATGCCCTCGGACCGAACTGGACTTGGGCGAATG GCGACATACCACCAACGGGATCCGAGGGTAACGTTCATGAGCCCATTCCC GGTAAGTGTGCAGGCATGCCGATGCATCACTCTGACTGCGATCGGTCAGT ACAGCTTCGTCAGCGATACTAGAACAACAAAGTTTCGGTTTGAACTCGCG TTTTTACACGGCTCCTCGTGAAGTTCTTTTCGCTGATACAGAGCCCGCTC AAATCAAGTCCTTGCCATGTCTTTACCCATCTGTTATACTATTGCTCTCT GTTTGAACACCCCCTTCCACGGCGGGTTTTGGGCGATGGGCGATGGGTCT CGGCACAAGTCATTTCATAAACAAAAAGAGTAAAAATAGTTCTCAACGTT ACCCCCGCTTTCCAAGCAGATGTACCAGGCCAAGCTTTTTGAGAACGCAT CTACGAAGAGGGGGATTCGTCGCTACGGAGGAAGTCGTCACTATCACTAT ATAATGAGTCTCGACGATGTCGAAACCTACAGAGGTGCAATGATGGTGCA TTCAACTATAACTGAGATGCTTTCCCACGTGAGTCACTAATTAAAGCGAT GGTCCGAGCAATCAGCTCTCCTCGCACTGTACCGTATACACTCTCAAACG TTTGTGAATCGCTGTATTTAATGCAGTCTACGCGTTTTGTCCCTGGATGC TTTTATTCAAACAAAAAGGTCAGCAAAAGGTTGTATTATTGTAAAAATAT AGATACGAAGTTTCCTGGTATCTATTAATGACTAACATCGGTTCCCCGGC CATCACGATAGGTATCTAGAGAACCCTGACTAATTTCTCATGGTTTCGGG CATGAAACAAGAATCCCCAGAAAACAAGTTTTATTTCCGATGGAGAAACG TGTATGCATTAATGTTCCGTCTCGGCTTTCTGATCGAATGCGCATGAATA TCAATAGAAGTCGGACTTAGGGTGAGCATTGCCGTCGATCACTCTCCTCA AGCTTTCATTGACCGAGAGTTTAGAAATTTGCTTTCTTCGCGACTCGGAG TTGCTCTGATTACATAGCCTGTATCCCGTACGCTCAGCTAACCACGAATT GATGAACAACCATGGATCCTTCTTCATTCTGGACGTCTACATGTTTCTGC CGTAGATTTATCTTGGCGACCTGCGTGTGACTGTGGGATGTGCTATTCAA TATATTCTCGACTACTACGCAAAAGAAAATTACGGTGTCTGCTGAAGGTG TTTGAGCAAAAGGGAAAAAAAACACGCAATAATCAAGAATCACAAATCTC GCGAAACGATACATACGCCTGAAAGAATACCGATACTTCGTAACTTGATT CCATATATTCTGTCATGAATGTGTGGTCACTCTTTCAGCGGAAGGAAGTG GAAAACCTCGGGAAGCATCTACCTAAAGCCCATGATATCGCAACAGGGAG TCGGGAACCACGAACTGGGGACAAACAGACAGCCTTCTCTACTACATCAT ATCCTTTGACTCCCTCGACAGCAAAATGGAGAAGAGACCCACAACAGCAG CAGTAGTCCTGCTCGCCATTCAGCAGTTGTTCGACCGATTATCCTTCCAA CTAGCCTTTGGCGTGATACGCTAGTCTGAGCTCTACTGCGACGACAACGC AGACTGATTGGGGCAACAATGCCTTCTAGAATCATCCATAGTATTCTCCG AACATTCTCCGACTCAATTCTCTGAGCATTCAACTGATCAATACTCTCGC CCTCACAAATTGCAGATTCCGGTTCTGGAATCCTCCCCTTTGTATACGTA TTTTTCGTCATTAATGTGTAGTCAACCTTCCAACGGGAGGAAGTAGAAAC CTGCAGAGGCGCCTCCCTAAACCTCACGGCATCGCGGCAATAAGTCGGAA ACGACCATCCAACGACAAACAGCCAGCCTCCACACAGGGGGTTGTCACTC GTTGCGCATATCTGTAGAAAATGTTCCGCTCCCATCCCCCTTGTCATCAC TAATAAGTCAATTCAACTAGACAACACATCTGTGAATCAACCAACTAATG AGTCAGTGAATTAAAAAAGAATAACAATCAGTCAATCAGTCACATTTGCA TATCAAATATATCACACATTTATATCCCACACCGTCCTTTGGCCCGGCTG CAAGGTCAGCTGCGCGTCTGCGTCAGCCAACATGTCCGACACCGCCGAAC AAACCCACATACCCACGGCGCAAAATGTGCACATGGTCCCAACGTCCTTC TTGAATCGCGAATATTTCCCCTGCCTATGTTATAACCCCCCCCGGGGCCC CTAGTGCCAGCCATAGCGCATGCCCCTCGCACTGACGACACAATGACTCA CCAGCAAGAATCACACTCCGCGTCGCAGGCCTATGTGTACGCGACGTGGC TTCGACCTCTGCGAGAGAGCGAGTTACCCCCTTAGCATGCCTCCTGAATG ACGAAGAAACAGTTCAAGTCCGTGCTCTTGGTGGCAAAAGAACCCACCGC CACCAAACCACCAGCTCTAAGTGTCACCTCGCACAATACACAGTCCCTGT CTCCCACGGGACGCTTACCGCACACCACAACCACAATATATGCGGACACT ACCATGCCGAGCAGATCGAGGACATTGATATAAATAGTATCCTGCGACTG AAGGTGCTTGCTGCTTCCACAAAAACGAGCTAGCTCTTCTCCACATAAAT CGTATCGTCAATATTGGCCTGTTTTCAAACAGAAAACACCTATAGCGTGC CTGGACGCGCCCAAAATTTAACGTGCGTGCTACCAGACGGCACAAGGGCG CGGACCGCACCCCCTTGCTTGCATCCATGCCTGCCTCGACGATGCACCAC CAAACGTCGAGGTCGCCGTGGACCTCAGAGGCAAGAGAGACTAGCCATCG GAACCACCCACCCAACGACAAAAACCAGGCGGCTTAAGACAGGGGCATGT GAGCATACACCAGTAGTTTCAGCACAAAACACTTCCAGGGCGTACCACCA TCGCTACATGCAATGGGAAACCCGTCAGCTCCACTATTTGCTTACATGTG GCAGAGTGCCGAGTAAGGGAATGACTCTACCCACGATAGGATGACATACC TCGCGAGAGGGAGTGTGCGTGGTTGATGTAGGATTGCTTTGATGGGGATC TAAACACACACTGAATTAGATGGGCGTAGGGACGAGCGTCCTCAGATGAA CCGCTTGAAGTACTGTACAGGTATGCAACAAACCAAATGAGGAAACCTAT CCTGGCCCCGTATTGGTCAACATGGAACTACTCTATCCGCATCGTGAGTG ACCAACGATCAGACCCCCTTAAGAGTGATCGGATAGGTACCTCAATAGCC CCCCAAACCCATTACATCCTACCGAGACTTAGATAGCCCCCCAGCTGTGT CATAACACGAGCATTCATACGCGCATAAAAACATACAGGAATCAACATAA ACACATCAAATCGCGAACACATCGAATGCTTCGCCACAATGTCCGCATGC TGATATTCAGAAGAAAGCGTACTGAAATATTCTCCTGGGTAACAAGCTCT CAAAGGAAACTTACTGTATAACTAAGAACTTTGACACTCAAAGCATAGTC AAATATTACTTGGCATACTTTACTATTAATACCAATCCACTAACGATCGC CATCTAAGGCTTTAGTGATACGTAATTTCTCATCATTTGCCGTATAGTAG CCAAATCATTGCAAGAATTGTCTAAGAAACTATTTTGCAAACACATGAAA TTGGCATGCCGTGCGACAAGACACATTCTTTTCTATTCTATGTGGGCAAC TTCTGCCGACTACATTGATTAGAAAATAGCTCTCACTATCAAGCATCAGG ATAAAAAGTGATTTCGTTATCACGGCATTCAGGCGAAATTTCAAACATTA AAATCGCTGAAGAAGACGAATGGATAGCATGGCTTCGATCTCAGAAACTT CAGTTTCATTACCAATTACCCTATCTTCTTCAAAGAGACGGCGAGGGACT ACCTTTTCTCCCCTCTGGCCACGACATCGGCACACTAGCTTGCGAGGCAT TCCCTCCTTCCCGCTGACCACTCAGGTCTAATAGCTATGCGGGGTCTACC TCTTCCCCACTTTTACCACGAATCAGGACATCGGGTACAATAGCTTACGG GGGCATTCCTCCTCCTCGCTGACCACCCAGGTCTAAAGCTATGCGGGGGC CTACCTCTTCCCCCTTTTACCACGAATCAGGTCCGCAATGCTGGCGGAGC ATACCTCTTCCCCCTTTCACGACATTAAGCACCTGCCTGCTGGTGACTCA AAATCTCGCATCCTACTCTGTAAAGAGTCTACCTCCCGGATGATTTTTGA AGAGATATATATGATCGACCTTTACTTTCATAAGCTTAACCAGACATTTT TTTTATTTCGAATTTCAGTCATGCGTACCGTAATGACTCAATGCTTTTCG TTTCCAAATCTAGGGGTCAAACATTGTTCCTAAAATGACGCAAGCAAGCT TTTCATTTTTTGAATTAGTTTTTTCCATGGCGAATATTTTGGATGACCAT AGGGTCTAATCCCCACCTGCATACAGATGACAGGGTTCGCCGTACACCAC GTCGACAGCATGTACTACTTTCTGCTGTGACAATGACTACTACAGTACTT GAAAATTATCAACTTTGTGAAGGAACATTAGCGGTGCATTGAGTTCAGAC TTTTTGAGTTACTCGGGCGGGGAAGAGCGATTATCAGACACACACTCGCT TCGGACGTACTAGTTCTCGAAAACAGCCCTTACTGAACAGACAACGTCCG CTTCGACAGCAGGCTACGCGTGGATATCTCAATGCACGAACGCACAGAAC ACGAGAGAACGACGAGTTATACGGTGCTAATTTTCTGCATTACAAAAAGC TTACTCAATCTTTTGAAATAAGCATACCCCACTGCTAGTAGTTCAGTTCA AAGAAGGACGAGTGGGCGATGGTGTCCAGAACACGGAGAATTTTTCGATC CTCTCGCTCTATAGGCGCTTCGTGGGGTTCCTTGTCGTCAAGCTCCTTGC TCCATGACGCTCCTCGACAACCTATCGCCCTTAGCTTCCAGTGACCTCGA ATCGTCCTCGACGACATACTCTCATCCTGGCACGACGTGTTCAAAGCCGG CCTTGCCTCGGAGAGTCAGCGAATTCACCGCTATGAACGGCGTAACATTT CGCTGGTACCATACTCCTGCAGGCTTCTCCAGTGATCGACCGTCCAAAAC ACGCTTCAGCCTCGTCCAGCCCCCTAACACGGACCTCCTCACAAAGCAAC GCGCGCCACGATCCCAAGAACGGGCAGGCGCGGAAGCAAATCCATATTCC TCTAGTCCATGAAGTCCTCGGCAGATGTCCAGGTCGAATTTTCTTATCCG ATGACAAACTGAAGTTTGGCGAGAGGAAGCTTCTGGAACAACGCTGATAA CAGCGTGCCTCTCGCAGCCATACCGCACGGTGGGTTTTAACCAGCCTAGT CTAACAGCCTCTTCTGCTAGCGTAAGAGAAATACTCTACCTACGATAAGA TGACATACCTCGCGAGAGGGAGTGTGCGTGGTTGATGTAGGATTGCTTTG ATAGGGATCTAAACAAACACTGAATTAGATGGGCGTAGGGAAAAGCGTCC TCAGATGAACCGCTCGAAGTACCGTACAGGTATGCAACAAACCAAATGAG GAAACCTATCCTGGTCCCCTATTGGTCAACATGGAACTACTCTATCCGCA TCGTGAGTGACCAACGACCACTCCTGAGGGGTACTTTTGTGAGTGCTGGA TCTTCGTGTGACTGGCGGTTATCCTGTCTGCTGCATCCTGTTCCGCATTG CTTCTGATTTACTATCATTACCGGAGAGACGCTGAGCCTCGATTCGTTAC TTCATCAGTTCAACCACTTTATCGTAGAGCTCCTAAAGTATTTTGCCTCC GCACTACCCAGAAGCAGTCTCGCTACAGCTTCCCTCGGCTACACGTTATT TGTCAAACGAACTGATCCGTGGGGTCCCTCCTGGCGCGGCTTCCGCGTAA GAGGTTTGGGCAATTGGAAACTGAAGGCCATGATTGTACCCATGCAAACT GCGAGTCTGCGTGCTCACAGCTATCACTTATGACTCCACACTCCAGGAAG ACTGGTTAAACGAGAAATAAAACAATCAATGGAAATAATGAAGAATAATC TCGAAAGTGACCGAGGACTACTAGGACGACGGCAATAAAGACATTGCGAC GGAAGTCTTGAACTTGCGACGAAATAATGCTTAGTTTGATTGATGGATTC ATTGATTGTACTTCAATGGTATCCGAACACAAAATGCCAGTCTCTCATCT TCAATTAAGATCTCCGTTCGGTTTATTCTCAGGGGTTAGCACAGAGCAGT AACGCATTGGGCCACTCCAAACATCGCGTGATTTTTTCAGCGCTCATTCA CGCCAATTTCGTATTCAGGTCCCAGAGTCACGTTTTTTCTTTAATGAGTA TGGCTGCAGGTTGGCAAATAGCCTCGTCGCCACACGAACTGGCGAGAGAA ACTCGCTTATTAAATAGACGGACAAAAGTCTTATGACCAAATTTATGTTA GCCCCGTATCATTTTCGACGTACAAAGGACTTTGCTGAGGGCGGGTTACT TGTGTCTACGGCACGGCCCATGGCGGCCGCCAGGTTAACGTAGTGATGTT TCTCGTACGTGCGATTTGATAGTGGCGAAATGCCCCGCCAGTAAAAGGGC TTTGGAACTATCAAAGCAGTATTAGACCAAGAGTGCACTTAATAGATCTC GACATGCAAACGGTGTCTATGATGATCGTGTTGCCCAAGTTCCCTATAAC AACCTCGTGCTTTTTTGTTGTTGCTTTTCTTCGTGCGAAAAGCCAGAGTG TCTCCTCTTTTGGAATCTAAAGAGAGAAACAGCTGAAGCTGCTAGCATGA ATGAAGTGTTTTGACGCGGCAGGAAAAACCATATTGGGCAAAAGTTAACC TAATGTTGGAGTCGAATATTTCTCGTACTTATTTTTTTTTCGTTCTGCTC TATCGTTCTGCTCTCGCCTCACACGTCTAAAATCTGGCTTAGATAATAAT CGCCACAGCCGTTGGGTCCAAAGCTGACTTATACGAAAAAGCCGCCGCCA TCCAAGACATAAGCGGGAAAAGTGCGGCGGCCCGACTGTCATTTAAGGTA AGCGCAGACAAATGCACCTCGTGACACGTATGAGATGCGTCTGGCAACAT CAGACCAGTACATATTAGGATACAACTCAGAGTGGGCTACAACAAGTAAA ATAGTACACAACATCGCGAATGACGTTTTTTTTTTCGTGGAAATCCCTAT GAATTCCCCCTTGTAAGCACCCCGGCCGTCGTATACCAGGTTGGGTCCAA ACATATTTGTGTTATTGTAAGAGTCGACCAAAAACGAAAGACGGGTTTTT GTTCCCATGTCGTATTAATAGTTTATTGGGTACCAGGTATTTCTGTTGCA CATAATAGAGGAAACGAAATATCTCATCATCTAAGCTAAGGTTTATGGGT ATACTCGCGCATATCCTCTCGACCACTCTTTAACGTAGTATGAAGATATG GTGATCTTGGGGGAGCTAGATATGCTCTATGACCTACGAAATTTACCCAT CCGACTTTATGATTGCCCAACCGTGGCAGATTTGTACCGACTGTCCAGCT GGATTACTCCCGTTTCACGTGAAGCCAGTCCCTGAGCCTGTTTGTGAGAC GGCCACGTCTCTGCAAGGCGATGCGCGTGTGGGCAATGTTTGGAATAACG AGCTCTGTCCTGACTGGTGCATGGCCACAGAGCCAGTTGGTAAAACACCC ACCGAATCCGGCATGGTGGACGTCCGTGTTTGTAAAGAAGACGGGTAA
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig1217:208857..218954-

>mRNA_A-nodosum_M_contig1217.2.2 ID=mRNA_A-nodosum_M_contig1217.2.2|Name=mRNA_A-nodosum_M_contig1217.2.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=1635bp|location=Sequence derived from alignment at A-nodosum_M_contig1217:208857..218954- (Ascophyllum nodosum dioecious)
AGATCCAACCATACAGCCGAAGGGAGAGGACTTCATAACGCTAGGACCGG
CCAGTCAGCGTCGTTTACGATTCATCTGGTCCCTCAGGATGAAGATCCTC
CAAATAGCGTTTGGAATATTCAACAAGGGACATTCTTCTACGTCTGGATA
GCAAATGAGGAGCAGATTTTCATTGCGGAAGTAACCAACAATATAGATGG
AACACTCACCGCCACCTATGAGAGCGATTTTCCCGGACGGTACCTTATTT
ACGTTGAAGCTGTTATTATCGAAAAGCACGACGAAGGTGTGCCCATTGTT
GGTAGCCCGTTTGCTTTGACAATTGCTGGTGATCCGACGGTCGACATCGA
CAGTTTACCAGTATGTAGTACAGCACAAGACGAAGAGCGTACCCCCGAGG
CCTTTTGGAAACCGGGCACGTGGATCTCTTCAAGGCTTGCTAGCGCAAAG
CATGGCGTAGCCAGGGATGGTTGGGTCTTCCAGCCAAAGACTTGTGTCCA
CGACGCATTCTCTTACGATGACCTCATGTTGCTGGCTAGCCTGGAAGAGA
CGACATGGTTGCTGGTCTTAGGTTCGTCAATTCAACGGGGCGTATTTTTA
ACGTTAGTGGACATGGTTCTGGCCCAAGGGCAGAAGGATGATATGGACTC
GAGTGTGATCGCGAAGTGCTGGGGCTATGCAGACATCACCGTGGGGAATC
TTCGCATCACCTACCAGGATATGCGTCTATCTATAGCGAATGGGATGGGA
AACGCTGTGGAGTGCAATAACGAGAAGCTCGTCAGTGGAAGCACCTCCGT
ATTTCGTCGTTCAGCCGAAGGATTTTTGGCGTCGTCCGTATTTGCGGATG
GGGAAGCGTGGCCCAGTGTCCTTTTTACTCCTTCTTTTCTTGTTTTTGAT
GGCGAATCCCCGAACAATGCTATAGAGGTGCTACTCGGTGGGGTTCCGAA
AACATGGCAAGGAAAAATGATTATGGTTGACCACATGACCGGCTTGGACA
GCATTTTGGAGACGGAAAATCCAACAAGAACCGCATTGAGAGACGTAGGC
ATAACAAAATTTTGCGTGATGCCCTCGGACCGAACTGGACTTGGGCGAAT
GGCGACATACCACCAACGGGATCCGAGGGTAACGTTCATGAGCCCATTCC
CGATGTACCAGGCCAAGCTTTTTGAGAACGCATCTACGAAGAGGGGGATT
CGTCGCTACGGAGGAAGTCGTCACTATCACTATATAATGAGTCTCGACGA
TGTCGAAACCTACAGAGGTGCAATGATGGTGCATTCAACTATAACTGAGA
TGCTTTCCCACATAATAATCGCCACAGCCGTTGGGTCCAAAGCTGACTTA
TACGAAAAAGCCGCCGCCATCCAAGACATAAGCGGGAAAAGTGCGGCGGC
CCGACTGTCATTTAAGATTTGTACCGACTGTCCAGCTGGATTACTCCCGT
TTCACGTGAAGCCAGTCCCTGAGCCTGTTTGTGAGACGGCCACGTCTCTG
CAAGGCGATGCGCGTGTGGGCAATGTTTGGAATAACGAGCTCTGTCCTGA
CTGGTGCATGGCCACAGAGCCAGTTGGTAAAACACCCACCGAATCCGGCA
TGGTGGACGTCCGTGTTTGTAAAGAAGACGGGTAA
back to top