mRNA_A-nodosum_M_contig12159.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig12159.1.1
Unique NamemRNA_A-nodosum_M_contig12159.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig12159.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig12159contigA-nodosum_M_contig12159:1704..5294 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size606
Hectar predicted targeting categoryother localisation
Exons6
Cds size606
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig12159.1.1prot_A-nodosum_M_contig12159.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig12159 1704..5294 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866641.1327007-CDS-A-nodosum_M_contig12159:1703..18481680866641.1327007-CDS-A-nodosum_M_contig12159:1703..1848Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig12159 1704..1848 -
1680866641.1440125-CDS-A-nodosum_M_contig12159:2367..24941680866641.1440125-CDS-A-nodosum_M_contig12159:2367..2494Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig12159 2368..2494 -
1680866641.1559634-CDS-A-nodosum_M_contig12159:2942..30031680866641.1559634-CDS-A-nodosum_M_contig12159:2942..3003Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig12159 2943..3003 -
1680866641.16884-CDS-A-nodosum_M_contig12159:3806..38971680866641.16884-CDS-A-nodosum_M_contig12159:3806..3897Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig12159 3807..3897 -
1680866641.1771939-CDS-A-nodosum_M_contig12159:4422..44971680866641.1771939-CDS-A-nodosum_M_contig12159:4422..4497Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig12159 4423..4497 -
1680866641.1876884-CDS-A-nodosum_M_contig12159:5187..52941680866641.1876884-CDS-A-nodosum_M_contig12159:5187..5294Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig12159 5188..5294 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig12159.1.1

>prot_A-nodosum_M_contig12159.1.1 ID=prot_A-nodosum_M_contig12159.1.1|Name=mRNA_A-nodosum_M_contig12159.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=202bp
MVEGDEDVVLLEEGPFRLTASCQTINYTNSDWDDVYFYSSHYYSTYISST
YLGFNSTSSSSFPSDSSTFSYGYDDDYTDDYNDNYVHSDSIAALELTFTA
SDSDYLFGSPTYIRYPHEERIVGSYEAGESRTQIILRGRDGGYSQDSTLQ
SLSGSYITTNGANTIGAHKSQTRWYPYNEESSFPEGVDCLVAGVISYTAS
K*
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mRNA from alignment at A-nodosum_M_contig12159:1704..5294-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig12159.1.1 ID=mRNA_A-nodosum_M_contig12159.1.1|Name=mRNA_A-nodosum_M_contig12159.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3591bp|location=Sequence derived from alignment at A-nodosum_M_contig12159:1704..5294- (Ascophyllum nodosum dioecious)
ATGGTAGAAGGCGACGAGGACGTGGTACTTCTCGAAGAAGGGCCCTTTAG
GCTCACGGCTTCTTGCCAAACCATCAACTACACCAACAGCGACTGGGACG
ACGTCTAGTGAGTGCCACACTTGAACCAAATCGGTTCGTTGTTATTCCAC
TTGTAAATTAGATAGTATGTGTCATTTACAAAATGGGCGTACTACGTACC
ACGTACCCAGTACGTATTATGCATGTGGGTGTATCTATATCTATATAGAG
AGAGAGCTATGTATGTAGTCTATGGATTTATTATGTACTACACATACATA
ATCGCGCAGTCGCATCCCCCACTGGGGGTGTATGTATTTATGTATGTGTG
TATGTATGTATAGCCGTGTATATATTGTATCGTCACTTTTATCAGACTTG
GCGCGAACTGGTTAAGGTTTACAAACCTGTTCGTGGTCAACCGAACTGGT
ACAATCAAACTCTCCCCGTCTGCGCTCGATTTTTTTTTCTCGCGATACAG
GCTCGGCCGTCCCATCCCGCATCAGTCCGCTCATTCTCCACGCCCAAACT
GTATTATACCTTAATATCATATTATTTGGCGCGTTTCACGAGGGGTGCAT
TTCTTTGTATATTACCCTAGTATAATTTATATACCGTATTACACAGTAGT
ACAGGTGGTCAGCTTACTGCCGTATTTTCTCGACAAAACCTCTGTCCGAC
TTTCGAGCATACTATCATAGTGCAAGTGAAATCATATGCCCCCCGCCCCC
GCCTCCTAACATTGGCAGCGTTGATTTTCACGATTCTTGCGTTTCAGCTT
CTACTCTTCCCACTACTACTCCACCTATATCTCGTCTACCTACCTCGGCT
TTAACTCCACCTCCTCGTCAAGGCAAGTCTATACTATTTTGAGGCACATG
CATTGATGGCACTAGCCCAGTTTCAGCTCGGGTCGTCGAGTGCGAACATC
GACAAATGGTATTGGATGGATTCAAACATCGTACGCACCGATTTAGTTCA
AAGAACCTCGTTTAGCAGCGTTTTGATCGACACGCGGGAAATCGCGTTTT
TTGCCGTTGTCGCCGAATATGGACTACGATCCACCCTTCACTTGAGTGTC
GTATCTCATTTCGAACCCCAGCCAGCGCGACGACCGGAACCTAAGGCGAA
TATTTCCCACGCGGATGGTGTATGCTTTCACTTTTAAACCGCGGAGTAGA
TGACTTGGATCCTCCATCGCGCAAAATAGCGTTCATTGACGCATGGAAAG
GCGCCTGACCCGATCTGTATCGATCGATGATAACTTCACGATTGCGAAGA
AGGTTGTCGAACCATCGTTCTCGAGATATTTCACGCTTTGCTGCTGGCAA
CATCCACGTCGACTTATAACATCATCTTGATTGACCATCATCGGCAGCTT
CCCATCGGACTCAAGTACCTTCAGCTACGGCTATGACGACGACTATACGG
ACGACTACAATGACAACTATGTTCACTCCGACAGCATCGTGAGTATGATG
TAACTAACCCCTTAGTCCATGCGCAAAACAAAACAGGAAAGCGCAGTTAA
AATATTCGGAATCCAACAAAGAGTGTAAGCTATAAAGACTACTAATATTA
ATGTGTTATTATTAATATTGGTGTGTTATTATTAATATTAATGTGTTATT
ATTAATATATTAATATTGGTGTGTTATTATTAATATTAATGTGTTAATAT
TAATATTAATATGTTGGTACTGTTAATGGGTAACCTTCTTATTTATTCCT
TTTTATTCCTTTTTGTAGTGGTACTCCATAGTGGTACTCCGGTACAAGTT
TTTTCGCGTTTCTGTATATAACGACAGACCGGGCACTAAAAGGATTAATG
ATGCTGTATCTTGAAACTTCAAGATGGCGGTTGTCAGACACCGGGGACCT
TACTGTCCTTTATGATATGGAAAAGTGTGCGTTCGAACCTCTCCGAGAGA
GACTAAAAGACAGTTAGAGGGGGCAAAGGGGTCCGTGTTCAGATGAGCTA
TCCAGGATGTTGCTCGGTGTGGTGATTTCGATTTTATACAACAAAAACCG
AACAAAATAACTCGTAAAACTCTGGAGCTCAAATTTGACTTCGCGGAGTT
GTTTTTGGGGCCAACGGGCAACCATCGACGGCCACCTTCGATGGTCGAAT
AAACCCCAGCTGTCGTGGAAGGTATTCCCGATGTACACACACACATGAAT
ATATATATACCGGTATATACTTGTAATGTTTCATATCGCCAAACTTCTGT
GCTCGGACGACTTCTCCCGTTGGCGTGATAATCTTACGCAGGCCGCGCTT
GAGCTGACCTTCACAGCCAGTGACTCCGACTACCTCTTCGGCTCGCCCAC
CTGTGAGAGAACCTATATTATTAGTAATGTAATGAACAACAGTGATGTCT
GTACCTGTGCTAACTCGAGTTGAAACGCCTATACTACCCGATCATAGTGG
TTGACTCGATCGAAACACACACATGAGCACATACAAGTGCGCTTGGGGTG
GGGACTTGTTTCTTAACGAAACGTGTTCGCCTTCAAGTACTATCGGTACT
GCCGTATTAGCTCCAGAACGGTAGCTAATTTCCGGCTACAATACACAGTG
CTCTCACCCTCTCTTGGGCTTTCTGTGGGCTAAGGCATGAAGCGGTTGGC
GCATTCTCGATCAAGAAGTGGGATTCTCCCGCTCTGGGAAAGAAAGGTGT
AGCAGAGCAGGTGCTGCACATTATGTGCCTTTCCGCACCATTATAGCTCC
CTCGGCATGTCACCCGAGATTCTTGCCGTTGTCCTCGGTTTTCGCCACAG
ACATTCGTTACCCTCACGAGGAGAGAATCGTAGGTAGCTACGAGGCCGGA
GAGAGCCGCACCCAGATCATTCTCCGCGGGAGAGATGGCGGTTACTCCCA
AGATAGCACCCTTCAGTCCCTATCTGGGTGAGTGCGCAACCGATACTCTA
AGGCATTAGACCTATAGGGGTACGTGATGGTGGATAGCAACTGTACTCAA
AGTTTCTACGTTGTTGGCTAACGACAGAGCCACACACAAAATTGCGTCAG
GCACATACCACGTAGTTATTCATGAAAGTGGCGTGATTGGTACGTAATTG
GTCGAAGGTTACCTCATCGTCCCGTCTAATACGTCTGCGTGAATCTATGT
GGGTCGATGCAGCATGCGTCTGTTTGCGTTTAGTCTCGCGAGCTGTCTTG
CCGAAAGCGTTTCCTCGCTTTCCGTCTACAACACGTTTCGCGTGGGAAGA
CGAGTTGGGATAGCGAGGGGTTGGCTGGTGGTGCCAGATTTTTTATTTGG
TTTCGGAAATCAACGTTTACCCTTACATCGAACGATCGGCAAAGGACCCA
CCGTCCTACACACAAGGGATCGTTTTCTCTATGGTCCGTCTTCTGTGCCG
ATCTCATTACCCCTGGATTCCTTCTTTCCTACCTCATTGTGAGCAGGAGC
TACATCACCACCAACGGCGCCAACACCATCGGCGCCCACAAATCGCAAAC
TAGGTGGTACCCGTACAACGAGGAAAGTTCTTTCCCCGAAGGGGTCGACT
GCCTGGTTGCCGGCGTGATCAGCTACACGGCCTCTAAGTAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig12159:1704..5294-

>mRNA_A-nodosum_M_contig12159.1.1 ID=mRNA_A-nodosum_M_contig12159.1.1|Name=mRNA_A-nodosum_M_contig12159.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at A-nodosum_M_contig12159:1704..5294- (Ascophyllum nodosum dioecious)
ATGGTAGAAGGCGACGAGGACGTGGTACTTCTCGAAGAAGGGCCCTTTAG
GCTCACGGCTTCTTGCCAAACCATCAACTACACCAACAGCGACTGGGACG
ACGTCTACTTCTACTCTTCCCACTACTACTCCACCTATATCTCGTCTACC
TACCTCGGCTTTAACTCCACCTCCTCGTCAAGCTTCCCATCGGACTCAAG
TACCTTCAGCTACGGCTATGACGACGACTATACGGACGACTACAATGACA
ACTATGTTCACTCCGACAGCATCGCCGCGCTTGAGCTGACCTTCACAGCC
AGTGACTCCGACTACCTCTTCGGCTCGCCCACCTACATTCGTTACCCTCA
CGAGGAGAGAATCGTAGGTAGCTACGAGGCCGGAGAGAGCCGCACCCAGA
TCATTCTCCGCGGGAGAGATGGCGGTTACTCCCAAGATAGCACCCTTCAG
TCCCTATCTGGGAGCTACATCACCACCAACGGCGCCAACACCATCGGCGC
CCACAAATCGCAAACTAGGTGGTACCCGTACAACGAGGAAAGTTCTTTCC
CCGAAGGGGTCGACTGCCTGGTTGCCGGCGTGATCAGCTACACGGCCTCT
AAGTAA
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