mRNA_A-nodosum_M_contig1215.5.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1215.5.1
Unique NamemRNA_A-nodosum_M_contig1215.5.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1215.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1215contigA-nodosum_M_contig1215:132702..133876 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size936
Hectar predicted targeting categoryother localisation
Exons2
Cds size519
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866640.999577-UTR-A-nodosum_M_contig1215:132701..1331091680866640.999577-UTR-A-nodosum_M_contig1215:132701..133109Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1215 132702..133109 -
1680866641.0100803-UTR-A-nodosum_M_contig1215:133348..1333521680866641.0100803-UTR-A-nodosum_M_contig1215:133348..133352Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1215 133349..133352 -
1680866641.0326128-UTR-A-nodosum_M_contig1215:133871..1338761680866641.0326128-UTR-A-nodosum_M_contig1215:133871..133876Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1215 133872..133876 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866641.022867-CDS-A-nodosum_M_contig1215:133352..1338711680866641.022867-CDS-A-nodosum_M_contig1215:133352..133871Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1215 133353..133871 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1215.5.1prot_A-nodosum_M_contig1215.5.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1215 133353..133871 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1215.5.1

>prot_A-nodosum_M_contig1215.5.1 ID=prot_A-nodosum_M_contig1215.5.1|Name=mRNA_A-nodosum_M_contig1215.5.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=173bp
MCGTDGCGKHPSFGVAGTKTAEYCRQHAPDGMVNVHRKVRTEDSGMISVF
KVAITETADYCAQHIRPKCGVGGCRRREIDPNHSGKESIGDASLSSSKHE
TVHSPPAQASPLSGDSRVSRKRVRHLHNVPTALERAVVLESAVGAVTMPE
IEEQKSPVKRDPSVKTEVHVFL*
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mRNA from alignment at A-nodosum_M_contig1215:132702..133876-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1215.5.1 ID=mRNA_A-nodosum_M_contig1215.5.1|Name=mRNA_A-nodosum_M_contig1215.5.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1175bp|location=Sequence derived from alignment at A-nodosum_M_contig1215:132702..133876- (Ascophyllum nodosum dioecious)
GGAAAATGTGCGGAACTGACGGCTGCGGCAAGCACCCGTCGTTTGGAGTG
GCGGGTACGAAAACGGCAGAGTACTGCAGACAGCATGCACCGGACGGGAT
GGTCAACGTCCACAGAAAAGTTAGAACCGAAGACTCCGGCATGATTTCGG
TGTTCAAAGTCGCAATTACGGAAACGGCCGATTACTGTGCGCAGCACATC
AGACCAAAATGCGGTGTCGGAGGGTGCAGGAGAAGAGAGATTGACCCAAA
CCACTCCGGAAAGGAATCCATTGGTGACGCAAGTCTAAGTAGCTCAAAGC
ACGAAACGGTCCACTCTCCTCCCGCCCAGGCAAGCCCATTATCGGGTGAT
AGCCGCGTCTCTCGTAAGCGAGTACGACATCTACACAATGTGCCTACGGC
TTTGGAGCGAGCTGTTGTACTTGAGTCGGCTGTAGGAGCGGTGACTATGC
CGGAAATTGAGGAGCAAAAATCTCCCGTTAAGCGAGATCCTTCAGTGAAG
ACAGAGGTGCACGTCTTCTTGTAGTCAGGTATACTACACGTTACCGCAAG
TCTTTCTACTTGAAGATCAGTTTCATATTAAACAGGTACCCTGTCTGTTT
ATGGATTTCGCGGTAAGTCTCGTCGCGAGGGTGTGAGTTCAGCTCAAGAC
CCCCTGTCCCTCTCAGATACTAAGACCTTGTGGCTGCGGCTATCCTTCAT
GAAAGACGCCACTCCTGCTTACCCTCACACGACCTTATGTTATCGTTCTC
CGGCCTTTCGGATTCAGGTCGTGTGGTCAAGAGCGCGGTAATGATATCGA
TTCTATGGCCGCCGAATCGCTGCTGGATCTGGTAAGGGTCCTACCGTGCG
TACCGCTAAGAGTTTTGACATTTTCCCCCCCTGTGTGGGAATAAATGCTC
AGAAGGTCTAGATGCGTTCAGATTTTTCTTTAATCAGCTTCATGCATTTT
CACTTCTTACTTCATGCAAGTATCCCTTCCCATACCAAGCATCCATATAG
GGGTGTTCTATCCTTGAACTTCCGGTACTGTACTGTAGAATTCCCTACGT
GGCGACTAGGAAACACGGGTAGGCTGAACCGGCGCTGGGGACGATACAAT
CGAGGATGATCTGTTTAACTTCCCGCCCATCCCATCCCGATATCAAGAGG
GGTGAGTTTTGAGTTTGACAGTGAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1215:132702..133876-

>mRNA_A-nodosum_M_contig1215.5.1 ID=mRNA_A-nodosum_M_contig1215.5.1|Name=mRNA_A-nodosum_M_contig1215.5.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=519bp|location=Sequence derived from alignment at A-nodosum_M_contig1215:132702..133876- (Ascophyllum nodosum dioecious)
ATGTGCGGAACTGACGGCTGCGGCAAGCACCCGTCGTTTGGAGTGGCGGG
TACGAAAACGGCAGAGTACTGCAGACAGCATGCACCGGACGGGATGGTCA
ACGTCCACAGAAAAGTTAGAACCGAAGACTCCGGCATGATTTCGGTGTTC
AAAGTCGCAATTACGGAAACGGCCGATTACTGTGCGCAGCACATCAGACC
AAAATGCGGTGTCGGAGGGTGCAGGAGAAGAGAGATTGACCCAAACCACT
CCGGAAAGGAATCCATTGGTGACGCAAGTCTAAGTAGCTCAAAGCACGAA
ACGGTCCACTCTCCTCCCGCCCAGGCAAGCCCATTATCGGGTGATAGCCG
CGTCTCTCGTAAGCGAGTACGACATCTACACAATGTGCCTACGGCTTTGG
AGCGAGCTGTTGTACTTGAGTCGGCTGTAGGAGCGGTGACTATGCCGGAA
ATTGAGGAGCAAAAATCTCCCGTTAAGCGAGATCCTTCAGTGAAGACAGA
GGTGCACGTCTTCTTGTAG
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