mRNA_A-nodosum_M_contig1215.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1215.1.1
Unique NamemRNA_A-nodosum_M_contig1215.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1215.1.1 vs. uniprot
Match: D7FZQ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZQ7_ECTSI)

HSP 1 Score: 182 bits (461), Expect = 7.720e-56
Identity = 92/158 (58.23%), Postives = 121/158 (76.58%), Query Frame = 1 
Query:    1 FLAQGRRCRLDKRVSGGQGKLIRCSGAIIVDGVKGATGCQARVRAYKGRSTNEWNITEAVLNHVLCTGQSGEKRKRPCRRSVEEEAAKLINANHTITSPALVKTLKATAGVEISERTANRVRSDVLGKGQNATAAHYQLLDSYLSSIGRGNGNIVECE 474
             ++Q R+CRLDKRVSGG+GKL RC+GAII    K  +GC  R R  K ++   W +TE VL+HV CTGQ+G K++R  RR VE EAA L++ANH+IT P+LVKTLKAT+GV++SER+A+R+R+D+LGKG++A A  YQLL S    +GR NGNIVEC+
Sbjct:    1 MISQSRQCRLDKRVSGGRGKLHRCTGAIING--KATSGCPVRARGCK-QTDGTWKVTEVVLDHVACTGQAGNKKQRINRRCVEGEAAALVSANHSITCPSLVKTLKATSGVDVSERSASRMRADILGKGKDAIAKEYQLLQSSCDLLGRDNGNIVECQ 155
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BLAST of mRNA_A-nodosum_M_contig1215.1.1 vs. uniprot
Match: A0A6H5JX21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX21_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 2.840e-53
Identity = 90/158 (56.96%), Postives = 116/158 (73.42%), Query Frame = 1 
Query:    1 FLAQGRRCRLDKRVSGGQGKLIRCSGAIIVDGVKGATGCQARVRAYKGRSTNEWNITEAVLNHVLCTGQSGEKRKRPCRRSVEEEAAKLINANHTITSPALVKTLKATAGVEISERTANRVRSDVLGKGQNATAAHYQLLDSYLSSIGRGNGNIVECE 474
             ++  R+CRLDKRVSGG+GKL RC+GA+I    K  +GC    RA K      W +TE VL+HV CTGQ+G K++R  RR VEEEAA L+++N +IT PAL KTLKAT+GV+ISERTA R+R+D+LGKG++  A  YQLL SY   +GR NGN+VEC+
Sbjct:   47 MISTSRQCRLDKRVSGGRGKLHRCTGAVING--KATSGCPVLARACKLHD-GTWKVTEVVLDHVACTGQAGNKKQRINRRCVEEEAAALVSSNRSITCPALAKTLKATSGVDISERTAGRMRADILGKGKDTIAKEYQLLQSYCDLLGRDNGNVVECK 201
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BLAST of mRNA_A-nodosum_M_contig1215.1.1 vs. uniprot
Match: A0A6H5KQC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQC0_9PHAE)

HSP 1 Score: 177 bits (449), Expect = 2.140e-52
Identity = 91/157 (57.96%), Postives = 117/157 (74.52%), Query Frame = 1 
Query:    1 FLAQGRRCRLDKRVSGGQGKLIRCSGAIIVDGVKGATGCQARVRAYKGRSTNEWNITEAVLNHVLCTGQSGEKRKRPCRRSVEEEAAKLINANHTITSPALVKTLKATAGVEISERTANRVRSDVLGKGQNATAAHYQLLDSYLSSIGRGNGNIVEC 471
             ++Q R+CRLDKR SGG+ KL RC+GAII    K  +GC  R R  K ++   W +TEAVL+HV CTGQ+G K++   RR VE++AA L++ANH+IT P+LVKTLKAT+GV+ISERTA R+R D+LGKG +A A  YQLL +Y   +GR NGNIVEC
Sbjct:    1 MISQSRQCRLDKRDSGGRSKLHRCTGAIING--KATSGCPVRARGCK-QTDGTWKVTEAVLDHVACTGQAGNKKQGINRRCVEKQAAALVSANHSITCPSLVKTLKATSGVDISERTAGRMRVDILGKGNDAIAKEYQLLQNYCDLLGRDNGNIVEC 154
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BLAST of mRNA_A-nodosum_M_contig1215.1.1 vs. uniprot
Match: A0A6H5L4I0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4I0_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 2.540e-49
Identity = 90/158 (56.96%), Postives = 116/158 (73.42%), Query Frame = 1 
Query:    1 FLAQGRRCRLDKRVSGGQGKLIRCSGAIIVDGVKGATGCQARVRAYKGRSTNEWNITEAVLNHVLCTGQSGEKRKRPCRRSVEEEAAKLINANHTITSPALVKTLKATAGVEISERTANRVRSDVLGKGQNATAAHYQLLDSYLSSIGRGNGNIVECE 474
             ++  R+CRLDKRVSGG+GKL RC+GA+I    K  +GC    RA K      W +TE VL+HV CTGQ+G K++R  RR VEEEAA L+++N +IT PAL KTLKAT+GV+ISERTA R+R+D+LGKG++  A  YQLL SY   +GR NGN+VEC+
Sbjct:   47 MISTSRQCRLDKRVSGGRGKLHRCTGAVING--KATSGCPVLARACKLHD-GTWKVTEVVLDHVACTGQAGNKKQRINRRCVEEEAAALVSSNRSITCPALAKTLKATSGVDISERTAGRMRADILGKGKDTIAKEYQLLQSYCDLLGRDNGNVVECK 201
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BLAST of mRNA_A-nodosum_M_contig1215.1.1 vs. uniprot
Match: A0A6H5J5Y0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5Y0_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 9.690e-49
Identity = 87/152 (57.24%), Postives = 114/152 (75.00%), Query Frame = 1 
Query:    1 FLAQGRRCRLDKRVSGGQGKLIRCSGAIIVDGVKGATGCQARVRAYKGRSTNEWNITEAVLNHVLCTGQSGEKRKRPCRRSVEEEAAKLINANHTITSPALVKTLKATAGVEISERTANRVRSDVLGKGQNATAAHYQLLDSYLSSIGRGNG 456
             +AQ R+CRLDKR+ GG+GKL RC+GA IV+G K  +GC    R  K ++   W +TE VL+HV CTGQ+  K++R  RR VE EAA L++ANH IT P+LVKTLKAT+GV++SERTA+R+R+D+LGKG++A A  YQLL SY   +GR NG
Sbjct:  155 MIAQSRQCRLDKRIIGGRGKLHRCTGA-IVNG-KATSGCPVLARGCK-QTDGTWKVTEVVLDHVACTGQASNKKQRINRRCVEREAAALVSANHRITCPSLVKTLKATSGVDVSERTASRMRADILGKGKDAIAKEYQLLQSYCDLLGRDNG 303
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BLAST of mRNA_A-nodosum_M_contig1215.1.1 vs. uniprot
Match: A0A6H5L768_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L768_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 2.200e-37
Identity = 74/135 (54.81%), Postives = 99/135 (73.33%), Query Frame = 1 
Query:   70 CSGAIIVDGVKGATGCQARVRAYKGRSTNEWNITEAVLNHVLCTGQSGEKRKRPCRRSVEEEAAKLINANHTITSPALVKTLKATAGVEISERTANRVRSDVLGKGQNATAAHYQLLDSYLSSIGRGNGNIVECE 474
            C+GA IV+G K  +GC  R R  K ++   W + + VL+HV  TGQ+G K++R  RR VE EA  L++ANH IT P+LVKTLKAT+GV++SERTA+R+R+D+LGKG++A A  YQLL SY   +GR N NIVEC+
Sbjct:   21 CTGA-IVNG-KATSGCPVRARGCK-QTDGTWKVMDVVLDHVARTGQAGNKKQRINRRCVEGEATGLVSANHRITCPSLVKTLKATSGVDVSERTASRMRADILGKGKDAIAKEYQLLQSYGDLLGRDNRNIVECK 152
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1215.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FZQ7_ECTSI7.720e-5658.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JX21_9PHAE2.840e-5356.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQC0_9PHAE2.140e-5257.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4I0_9PHAE2.540e-4956.96SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5J5Y0_9PHAE9.690e-4957.24Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L768_9PHAE2.200e-3754.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1215contigA-nodosum_M_contig1215:822..1295 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog65071.PYU1_T015303
Model size474
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.43e-05
EggNOG OGs2EVC3@1|root,2SXCD@2759|Eukaryota,1MJUK@121069|Pythiales
Cds size474
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866641.0610476-CDS-A-nodosum_M_contig1215:821..12951680866641.0610476-CDS-A-nodosum_M_contig1215:821..1295Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1215 822..1295 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1215.1.1prot_A-nodosum_M_contig1215.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1215 822..1295 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1215.1.1

>prot_A-nodosum_M_contig1215.1.1 ID=prot_A-nodosum_M_contig1215.1.1|Name=mRNA_A-nodosum_M_contig1215.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=158bp
FLAQGRRCRLDKRVSGGQGKLIRCSGAIIVDGVKGATGCQARVRAYKGRS
TNEWNITEAVLNHVLCTGQSGEKRKRPCRRSVEEEAAKLINANHTITSPA
LVKTLKATAGVEISERTANRVRSDVLGKGQNATAAHYQLLDSYLSSIGRG
NGNIVECE
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mRNA from alignment at A-nodosum_M_contig1215:822..1295+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1215.1.1 ID=mRNA_A-nodosum_M_contig1215.1.1|Name=mRNA_A-nodosum_M_contig1215.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=474bp|location=Sequence derived from alignment at A-nodosum_M_contig1215:822..1295+ (Ascophyllum nodosum dioecious)
TTTCTGGCACAGGGTAGGCGGTGCCGCCTTGATAAGAGAGTATCTGGCGG
CCAGGGCAAGCTCATCCGCTGCAGCGGGGCGATCATCGTCGACGGCGTGA
AGGGGGCAACGGGCTGCCAGGCGCGCGTTCGTGCGTACAAGGGAAGGTCT
ACGAATGAATGGAACATAACCGAGGCCGTCCTTAATCACGTGCTGTGCAC
GGGGCAGTCCGGTGAAAAGAGAAAACGGCCCTGCCGAAGGTCGGTGGAGG
AAGAAGCCGCGAAGCTCATTAATGCGAACCACACGATTACATCGCCAGCA
CTCGTGAAGACGTTGAAAGCGACCGCCGGCGTCGAGATCTCCGAGCGTAC
GGCCAACCGCGTGCGATCCGACGTGCTTGGCAAAGGTCAAAATGCGACCG
CTGCACATTACCAACTTCTCGACAGCTACCTGAGCAGCATCGGGAGAGGC
AACGGCAACATCGTGGAATGCGAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1215:822..1295+

>mRNA_A-nodosum_M_contig1215.1.1 ID=mRNA_A-nodosum_M_contig1215.1.1|Name=mRNA_A-nodosum_M_contig1215.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=474bp|location=Sequence derived from alignment at A-nodosum_M_contig1215:822..1295+ (Ascophyllum nodosum dioecious)
TTTCTGGCACAGGGTAGGCGGTGCCGCCTTGATAAGAGAGTATCTGGCGG
CCAGGGCAAGCTCATCCGCTGCAGCGGGGCGATCATCGTCGACGGCGTGA
AGGGGGCAACGGGCTGCCAGGCGCGCGTTCGTGCGTACAAGGGAAGGTCT
ACGAATGAATGGAACATAACCGAGGCCGTCCTTAATCACGTGCTGTGCAC
GGGGCAGTCCGGTGAAAAGAGAAAACGGCCCTGCCGAAGGTCGGTGGAGG
AAGAAGCCGCGAAGCTCATTAATGCGAACCACACGATTACATCGCCAGCA
CTCGTGAAGACGTTGAAAGCGACCGCCGGCGTCGAGATCTCCGAGCGTAC
GGCCAACCGCGTGCGATCCGACGTGCTTGGCAAAGGTCAAAATGCGACCG
CTGCACATTACCAACTTCTCGACAGCTACCTGAGCAGCATCGGGAGAGGC
AACGGCAACATCGTGGAATGCGAG
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