mRNA_A-nodosum_M_contig1214.6.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1214.6.1 vs. uniprot
Match: A0A6H5JH94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH94_9PHAE) HSP 1 Score: 104 bits (259), Expect = 9.010e-23 Identity = 73/188 (38.83%), Postives = 101/188 (53.72%), Query Frame = 1
Query: 52 AQCNPSLNGSLEVRGVHQQSFSQPADGVLVKTTVSSTFRLVFLVGLEGSGHHYLTPA--------VNHIRSTGHDYSNECRHMYKRLGIKQAMERSPTYYRERVEEARGYMQTLAQYASSLPPKKAGTMLCGRNSYPRLTGPEKVFSYIDLGTLANLAEDEGVDLRVIYLKRSAKQMIISTTVHRKFY 591
A NPS S +V + S + +L KT VS FRLVF+ GLEG+GHHY+ A +N R GH E Y L + Q +++ VE M+ LA++A++L A SYP +GP KV Y+DLG +A AE G+D RV+YL+RSAK+++I+ TVHRKF+
Sbjct: 113 ASGNPS--DSPDVASQPSTTVSNSSTAILPKTHVSDVFRLVFVAGLEGTGHHYVMWANASLFGDNMNLPRRYGH--GKEIYEYYAPLKMGQNVKQFTMSSHNAVEN----MRRLAEWAANLSSPGALEFFSIPCSYPVNSGPLKVMQYMDLGMIAETAEGAGIDFRVLYLRRSAKEVVIANTVHRKFH 292
BLAST of mRNA_A-nodosum_M_contig1214.6.1 vs. uniprot
Match: D7G1E6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1E6_ECTSI) HSP 1 Score: 87.4 bits (215), Expect = 1.750e-18 Identity = 50/111 (45.05%), Postives = 67/111 (60.36%), Query Frame = 1
Query: 292 IKQAMERSPTYYRERVEEARGYMQTLAQYASSLPPKKAGTMLCGRNSYPRLTGPEKVFSYIDLGTLANLAEDEGVDLRVIYLKRSAKQMIISTTVHRKFYENLTVNDSSSE 624
I M S T + ++ R M+ LAQ A +LP ++ G SYP GP+KV Y+DL LA AE EGVDLRV+Y+KRSAK+++++ TVHR F L DSS+E
Sbjct: 23 ISTTMRTSSTAFTASWQQGRDQMRDLAQRAQTLPTPGTVQLITGGISYPCGNGPQKVQQYVDLRLLAEAAEAEGVDLRVLYMKRSAKELLLADTVHRGFQNFLGDIDSSAE 133
BLAST of mRNA_A-nodosum_M_contig1214.6.1 vs. uniprot
Match: D7FMV3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMV3_ECTSI) HSP 1 Score: 80.9 bits (198), Expect = 2.550e-14 Identity = 61/175 (34.86%), Postives = 86/175 (49.14%), Query Frame = 1
Query: 109 SFSQPADGVLVKTTVSSTFRLVFLVGLEGSGHHYLTPAVNHIRSTGH-DYSNEC---RHMYKRLGI---KQAMERSPTYYRERVEEARGY--------MQTLAQYASSLPPKKAGTMLCGRNSYPRLTGPEKVFSYIDLGTLANLAEDEGVDLRVIYLKRSAKQMIISTTVHRKF 588
SF PA V+ K TVSS R++FLVGLEG+GHHY + +T +N C + +Y L KQ ER+ R +E Y +AQ+ + K+G M S+P G +K Y+D LA AE GVD+R +YL RSA+ +++S T H +
Sbjct: 51 SFEYPA--VVEKKTVSSQLRVMFLVGLEGTGHHYFLNVFDDACTTAAVPCANACPIAKALYPSLATPSTKQDYERARRELRRELENLAAYPAEFMTEGQAAIAQFVTCR--SKSGMM-----SFPNFNGNDKALQYVDFRLLAEEAERAGVDVRFVYLARSARSILVSDTQHNHY 216
BLAST of mRNA_A-nodosum_M_contig1214.6.1 vs. uniprot
Match: D7FMV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMV4_ECTSI) HSP 1 Score: 77.0 bits (188), Expect = 4.820e-13 Identity = 54/169 (31.95%), Postives = 80/169 (47.34%), Query Frame = 1
Query: 109 SFSQPADGVLVKTTVSSTFRLVFLVGLEGSGHHYLTPAVNHIRSTGHDYSNECRHMYKRLGIKQAMERSPTYYRERVEEARGYMQTLAQYASSLPPKKAGTMLC---------GRNSYPRLTGPEKVFSYIDLGTLANLAEDEGVDLRVIYLKRSAKQMIISTTVHRKF 588
SF P V+ K VSS R+VFLVGLEG+GHHY+ + + + M K L + ++ +S Y + + R M+ LA + + T++ G SYP G EK Y+D +A AE GVD+R +YL RSA ++ S + H +
Sbjct: 92 SFRYPV--VVEKKAVSSRMRVVFLVGLEGTGHHYMADVLEDVCKKDKVRCPKLCVMAKVLYPELSLPKSRNAYWDARKRLREEMEKLAAFPEESLAEGESTVVSFGACRFQGTGMMSYPNFNGDEKALQYVDFRLVAEEAERAGVDMRFVYLARSAADILTSDSGHHNY 258
BLAST of mRNA_A-nodosum_M_contig1214.6.1 vs. uniprot
Match: A0A7S0A0K6_9DINO (Hypothetical protein (Fragment) n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0A0K6_9DINO) HSP 1 Score: 67.4 bits (163), Expect = 1.130e-9 Identity = 56/188 (29.79%), Postives = 82/188 (43.62%), Query Frame = 1
Query: 91 RGVHQQSFSQPADGVLVKTTVSSTFRLVFLVGLEGSGHHYLTPAVNHI-------------------RSTGHDYSNECRHMYKRLGIKQAMERSPTYYRERVEEARGYMQTLAQYAS---SLPPKKAGTMLCGRNSYPRLTGPEKVFSYIDLGTLANLAEDEGVDLRVIYLKRSAKQMIISTTVHRKF 588
R ++ +++P +L K + +RL+F+ GLEGSGHH P + R+ +S E + R K + A G ++T + S + P A CG SYP G K+F D+ LA LAEDEGVD R++ L R A ++ STT+HR F
Sbjct: 87 RAALERQWARP---LLPKRVHGARWRLLFVAGLEGSGHHLWIPLLKRCVKARRCAADVELGRRLWTDRTRKGLWSFETKLYAPRAAKKWEYAPPGAKWLSGFRRAEGEVRTALRRLSRRNATSPLLASLGGCGMMSYPNFPGKLKMFQTPDVRLLAELAEDEGVDFRILVLHRPAAAVLRSTTIHRHF 271
BLAST of mRNA_A-nodosum_M_contig1214.6.1 vs. uniprot
Match: A0A7S3PJR3_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PJR3_9STRA) HSP 1 Score: 58.5 bits (140), Expect = 9.820e-7 Identity = 48/171 (28.07%), Postives = 76/171 (44.44%), Query Frame = 1
Query: 133 VLVKTTVSSTFRLVFLVGLEGSGHHYLTPAVNHIRSTGH--------DYSNECRHMYKRLGIKQAMERSPTYYRERV-----------EEARGYMQTLAQYASSLPPKKAGTMLCGRNSYPRLTGPEKVFSYIDLGTLANLAEDEGVDLRVIYLKRSAKQMIISTTVHRKF 588
+L K S R VF++GLEG+GHH P ++ + D++ M + +R Y ERV ++ARG Q++ ++L K G SYP + +S D+ +A + E G+D RV+ + R A +++STTVHR F
Sbjct: 9 ILPKRAFSDQLRFVFVMGLEGTGHHMWLPIWTDCQNKSNCDCAPQIEDFTFGADQMRSGMFGAFTGKREVEQYVERVISQLPSKLAEDQKARGSDQSVTYLLNTLCVKHKHYWSVGAMSYPNFMNGCRSWSNPDVRLMAEVFESLGIDFRVMVVVRDALDVLLSTTVHRHF 179
BLAST of mRNA_A-nodosum_M_contig1214.6.1 vs. uniprot
Match: A0A7S2DFF0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DFF0_9STRA) HSP 1 Score: 55.5 bits (132), Expect = 1.340e-6 Identity = 28/61 (45.90%), Postives = 39/61 (63.93%), Query Frame = 1
Query: 406 GTMLCGRNSYPRLTGPEKVFSYIDLGTLANLAEDEGVDLRVIYLKRSAKQMIISTTVHRKF 588
GT G SYP G +K ++ LA LAE+ GVDLR++ L+R A ++++STT HRKF
Sbjct: 25 GTAGSGMLSYPNFGGYDKALHRPNIHQLAMLAEEAGVDLRILVLQRPAHELMVSTTKHRKF 85
BLAST of mRNA_A-nodosum_M_contig1214.6.1 vs. uniprot
Match: A0A7S3PR25_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PR25_9STRA) HSP 1 Score: 58.2 bits (139), Expect = 2.120e-6 Identity = 52/168 (30.95%), Postives = 71/168 (42.26%), Query Frame = 1
Query: 139 VKTTVSSTFRLVFLVGLEGSGHHYLTPAVNHIRSTGHDYSNECRH----MYKRLGIKQAMERSPTYYRERVEEA--RGYMQTLAQYASSLPPKKAGTML-----------CGR-NSYPRLTGPEKVFSYIDLGTLANLAEDEGVDLRVIYLKRSAKQMIISTTVHRKF 588
+K TV S RLVF VGLEG+GHH V + + EC+ M+ G ++ E+ GY GT + CG SYP G EK + D+ LA LAE G+D RV+ L+R A++++IS HR F
Sbjct: 412 LKKTVFSKLRLVFFVGLEGTGHHLWQGIVMKLLKNK-QLNAECKLNDLIMHPAGGCWAPWNNGKGFFCSAASESFKTGYEMAADAMMKLKASNATGTHMLNLVYRGWKGNCGSIASYPCFGGSEKNLQHPDVLKLAELAESIGIDFRVVLLQRKAEELVISDIWHRHF 578
BLAST of mRNA_A-nodosum_M_contig1214.6.1 vs. uniprot
Match: A0A7S2GH68_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GH68_9STRA) HSP 1 Score: 55.5 bits (132), Expect = 4.270e-6 Identity = 28/61 (45.90%), Postives = 39/61 (63.93%), Query Frame = 1
Query: 406 GTMLCGRNSYPRLTGPEKVFSYIDLGTLANLAEDEGVDLRVIYLKRSAKQMIISTTVHRKF 588
GT G SYP G +K ++ LA LAE+ GVDLR++ L+R A ++++STT HRKF
Sbjct: 25 GTAGSGMLSYPNFGGYDKALHRPNIHQLAMLAEEAGVDLRILVLQRPAHELMVSTTKHRKF 85
BLAST of mRNA_A-nodosum_M_contig1214.6.1 vs. uniprot
Match: A0A6H5KIA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIA1_9PHAE) HSP 1 Score: 52.8 bits (125), Expect = 8.210e-5 Identity = 24/56 (42.86%), Postives = 32/56 (57.14%), Query Frame = 1
Query: 421 GRNSYPRLTGPEKVFSYIDLGTLANLAEDEGVDLRVIYLKRSAKQMIISTTVHRKF 588
G SYP G EK Y+D +A AE GVD+R +YL RSA ++ S +VH +
Sbjct: 80 GMMSYPNFNGDEKALQYVDFRLVAEEAERAGVDMRFVYLARSAADILTSDSVHHNY 135 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1214.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1214.6.1 >prot_A-nodosum_M_contig1214.6.1 ID=prot_A-nodosum_M_contig1214.6.1|Name=mRNA_A-nodosum_M_contig1214.6.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=209bp MLGGILGLFSMTMTWRAAQCNPSLNGSLEVRGVHQQSFSQPADGVLVKTTback to top mRNA from alignment at A-nodosum_M_contig1214:103048..104494+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1214.6.1 ID=mRNA_A-nodosum_M_contig1214.6.1|Name=mRNA_A-nodosum_M_contig1214.6.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1447bp|location=Sequence derived from alignment at A-nodosum_M_contig1214:103048..104494+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1214:103048..104494+ >mRNA_A-nodosum_M_contig1214.6.1 ID=mRNA_A-nodosum_M_contig1214.6.1|Name=mRNA_A-nodosum_M_contig1214.6.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=627bp|location=Sequence derived from alignment at A-nodosum_M_contig1214:103048..104494+ (Ascophyllum nodosum dioecious)back to top |