mRNA_A-nodosum_M_contig1214.6.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1214.6.1
Unique NamemRNA_A-nodosum_M_contig1214.6.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1214.6.1 vs. uniprot
Match: A0A6H5JH94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH94_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 9.010e-23
Identity = 73/188 (38.83%), Postives = 101/188 (53.72%), Query Frame = 1
Query:   52 AQCNPSLNGSLEVRGVHQQSFSQPADGVLVKTTVSSTFRLVFLVGLEGSGHHYLTPA--------VNHIRSTGHDYSNECRHMYKRLGIKQAMERSPTYYRERVEEARGYMQTLAQYASSLPPKKAGTMLCGRNSYPRLTGPEKVFSYIDLGTLANLAEDEGVDLRVIYLKRSAKQMIISTTVHRKFY 591
            A  NPS   S +V      + S  +  +L KT VS  FRLVF+ GLEG+GHHY+  A        +N  R  GH    E    Y  L + Q +++        VE     M+ LA++A++L    A        SYP  +GP KV  Y+DLG +A  AE  G+D RV+YL+RSAK+++I+ TVHRKF+
Sbjct:  113 ASGNPS--DSPDVASQPSTTVSNSSTAILPKTHVSDVFRLVFVAGLEGTGHHYVMWANASLFGDNMNLPRRYGH--GKEIYEYYAPLKMGQNVKQFTMSSHNAVEN----MRRLAEWAANLSSPGALEFFSIPCSYPVNSGPLKVMQYMDLGMIAETAEGAGIDFRVLYLRRSAKEVVIANTVHRKFH 292          
BLAST of mRNA_A-nodosum_M_contig1214.6.1 vs. uniprot
Match: D7G1E6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1E6_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 1.750e-18
Identity = 50/111 (45.05%), Postives = 67/111 (60.36%), Query Frame = 1
Query:  292 IKQAMERSPTYYRERVEEARGYMQTLAQYASSLPPKKAGTMLCGRNSYPRLTGPEKVFSYIDLGTLANLAEDEGVDLRVIYLKRSAKQMIISTTVHRKFYENLTVNDSSSE 624
            I   M  S T +    ++ R  M+ LAQ A +LP      ++ G  SYP   GP+KV  Y+DL  LA  AE EGVDLRV+Y+KRSAK+++++ TVHR F   L   DSS+E
Sbjct:   23 ISTTMRTSSTAFTASWQQGRDQMRDLAQRAQTLPTPGTVQLITGGISYPCGNGPQKVQQYVDLRLLAEAAEAEGVDLRVLYMKRSAKELLLADTVHRGFQNFLGDIDSSAE 133          
BLAST of mRNA_A-nodosum_M_contig1214.6.1 vs. uniprot
Match: D7FMV3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMV3_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 2.550e-14
Identity = 61/175 (34.86%), Postives = 86/175 (49.14%), Query Frame = 1
Query:  109 SFSQPADGVLVKTTVSSTFRLVFLVGLEGSGHHYLTPAVNHIRSTGH-DYSNEC---RHMYKRLGI---KQAMERSPTYYRERVEEARGY--------MQTLAQYASSLPPKKAGTMLCGRNSYPRLTGPEKVFSYIDLGTLANLAEDEGVDLRVIYLKRSAKQMIISTTVHRKF 588
            SF  PA  V+ K TVSS  R++FLVGLEG+GHHY     +   +T     +N C   + +Y  L     KQ  ER+    R  +E    Y           +AQ+ +     K+G M     S+P   G +K   Y+D   LA  AE  GVD+R +YL RSA+ +++S T H  +
Sbjct:   51 SFEYPA--VVEKKTVSSQLRVMFLVGLEGTGHHYFLNVFDDACTTAAVPCANACPIAKALYPSLATPSTKQDYERARRELRRELENLAAYPAEFMTEGQAAIAQFVTCR--SKSGMM-----SFPNFNGNDKALQYVDFRLLAEEAERAGVDVRFVYLARSARSILVSDTQHNHY 216          
BLAST of mRNA_A-nodosum_M_contig1214.6.1 vs. uniprot
Match: D7FMV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMV4_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 4.820e-13
Identity = 54/169 (31.95%), Postives = 80/169 (47.34%), Query Frame = 1
Query:  109 SFSQPADGVLVKTTVSSTFRLVFLVGLEGSGHHYLTPAVNHIRSTGHDYSNECRHMYKRLGIKQAMERSPTYYRERVEEARGYMQTLAQYASSLPPKKAGTMLC---------GRNSYPRLTGPEKVFSYIDLGTLANLAEDEGVDLRVIYLKRSAKQMIISTTVHRKF 588
            SF  P   V+ K  VSS  R+VFLVGLEG+GHHY+   +  +         +   M K L  + ++ +S   Y +  +  R  M+ LA +      +   T++          G  SYP   G EK   Y+D   +A  AE  GVD+R +YL RSA  ++ S + H  +
Sbjct:   92 SFRYPV--VVEKKAVSSRMRVVFLVGLEGTGHHYMADVLEDVCKKDKVRCPKLCVMAKVLYPELSLPKSRNAYWDARKRLREEMEKLAAFPEESLAEGESTVVSFGACRFQGTGMMSYPNFNGDEKALQYVDFRLVAEEAERAGVDMRFVYLARSAADILTSDSGHHNY 258          
BLAST of mRNA_A-nodosum_M_contig1214.6.1 vs. uniprot
Match: A0A7S0A0K6_9DINO (Hypothetical protein (Fragment) n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0A0K6_9DINO)

HSP 1 Score: 67.4 bits (163), Expect = 1.130e-9
Identity = 56/188 (29.79%), Postives = 82/188 (43.62%), Query Frame = 1
Query:   91 RGVHQQSFSQPADGVLVKTTVSSTFRLVFLVGLEGSGHHYLTPAVNHI-------------------RSTGHDYSNECRHMYKRLGIKQAMERSPTYYRERVEEARGYMQTLAQYAS---SLPPKKAGTMLCGRNSYPRLTGPEKVFSYIDLGTLANLAEDEGVDLRVIYLKRSAKQMIISTTVHRKF 588
            R   ++ +++P   +L K    + +RL+F+ GLEGSGHH   P +                      R+    +S E +    R   K         +      A G ++T  +  S   +  P  A    CG  SYP   G  K+F   D+  LA LAEDEGVD R++ L R A  ++ STT+HR F
Sbjct:   87 RAALERQWARP---LLPKRVHGARWRLLFVAGLEGSGHHLWIPLLKRCVKARRCAADVELGRRLWTDRTRKGLWSFETKLYAPRAAKKWEYAPPGAKWLSGFRRAEGEVRTALRRLSRRNATSPLLASLGGCGMMSYPNFPGKLKMFQTPDVRLLAELAEDEGVDFRILVLHRPAAAVLRSTTIHRHF 271          
BLAST of mRNA_A-nodosum_M_contig1214.6.1 vs. uniprot
Match: A0A7S3PJR3_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PJR3_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 9.820e-7
Identity = 48/171 (28.07%), Postives = 76/171 (44.44%), Query Frame = 1
Query:  133 VLVKTTVSSTFRLVFLVGLEGSGHHYLTPAVNHIRSTGH--------DYSNECRHMYKRLGIKQAMERSPTYYRERV-----------EEARGYMQTLAQYASSLPPKKAGTMLCGRNSYPRLTGPEKVFSYIDLGTLANLAEDEGVDLRVIYLKRSAKQMIISTTVHRKF 588
            +L K   S   R VF++GLEG+GHH   P     ++  +        D++     M   +      +R    Y ERV           ++ARG  Q++    ++L  K       G  SYP      + +S  D+  +A + E  G+D RV+ + R A  +++STTVHR F
Sbjct:    9 ILPKRAFSDQLRFVFVMGLEGTGHHMWLPIWTDCQNKSNCDCAPQIEDFTFGADQMRSGMFGAFTGKREVEQYVERVISQLPSKLAEDQKARGSDQSVTYLLNTLCVKHKHYWSVGAMSYPNFMNGCRSWSNPDVRLMAEVFESLGIDFRVMVVVRDALDVLLSTTVHRHF 179          
BLAST of mRNA_A-nodosum_M_contig1214.6.1 vs. uniprot
Match: A0A7S2DFF0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DFF0_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.340e-6
Identity = 28/61 (45.90%), Postives = 39/61 (63.93%), Query Frame = 1
Query:  406 GTMLCGRNSYPRLTGPEKVFSYIDLGTLANLAEDEGVDLRVIYLKRSAKQMIISTTVHRKF 588
            GT   G  SYP   G +K     ++  LA LAE+ GVDLR++ L+R A ++++STT HRKF
Sbjct:   25 GTAGSGMLSYPNFGGYDKALHRPNIHQLAMLAEEAGVDLRILVLQRPAHELMVSTTKHRKF 85          
BLAST of mRNA_A-nodosum_M_contig1214.6.1 vs. uniprot
Match: A0A7S3PR25_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PR25_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 2.120e-6
Identity = 52/168 (30.95%), Postives = 71/168 (42.26%), Query Frame = 1
Query:  139 VKTTVSSTFRLVFLVGLEGSGHHYLTPAVNHIRSTGHDYSNECRH----MYKRLGIKQAMERSPTYYRERVEEA--RGYMQTLAQYASSLPPKKAGTML-----------CGR-NSYPRLTGPEKVFSYIDLGTLANLAEDEGVDLRVIYLKRSAKQMIISTTVHRKF 588
            +K TV S  RLVF VGLEG+GHH     V  +       + EC+     M+   G          ++     E+   GY                GT +           CG   SYP   G EK   + D+  LA LAE  G+D RV+ L+R A++++IS   HR F
Sbjct:  412 LKKTVFSKLRLVFFVGLEGTGHHLWQGIVMKLLKNK-QLNAECKLNDLIMHPAGGCWAPWNNGKGFFCSAASESFKTGYEMAADAMMKLKASNATGTHMLNLVYRGWKGNCGSIASYPCFGGSEKNLQHPDVLKLAELAESIGIDFRVVLLQRKAEELVISDIWHRHF 578          
BLAST of mRNA_A-nodosum_M_contig1214.6.1 vs. uniprot
Match: A0A7S2GH68_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GH68_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 4.270e-6
Identity = 28/61 (45.90%), Postives = 39/61 (63.93%), Query Frame = 1
Query:  406 GTMLCGRNSYPRLTGPEKVFSYIDLGTLANLAEDEGVDLRVIYLKRSAKQMIISTTVHRKF 588
            GT   G  SYP   G +K     ++  LA LAE+ GVDLR++ L+R A ++++STT HRKF
Sbjct:   25 GTAGSGMLSYPNFGGYDKALHRPNIHQLAMLAEEAGVDLRILVLQRPAHELMVSTTKHRKF 85          
BLAST of mRNA_A-nodosum_M_contig1214.6.1 vs. uniprot
Match: A0A6H5KIA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIA1_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 8.210e-5
Identity = 24/56 (42.86%), Postives = 32/56 (57.14%), Query Frame = 1
Query:  421 GRNSYPRLTGPEKVFSYIDLGTLANLAEDEGVDLRVIYLKRSAKQMIISTTVHRKF 588
            G  SYP   G EK   Y+D   +A  AE  GVD+R +YL RSA  ++ S +VH  +
Sbjct:   80 GMMSYPNFNGDEKALQYVDFRLVAEEAERAGVDMRFVYLARSAADILTSDSVHHNY 135          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1214.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5JH94_9PHAE9.010e-2338.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1E6_ECTSI1.750e-1845.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FMV3_ECTSI2.550e-1434.86Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FMV4_ECTSI4.820e-1331.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S0A0K6_9DINO1.130e-929.79Hypothetical protein (Fragment) n=1 Tax=Pyrodinium... [more]
A0A7S3PJR3_9STRA9.820e-728.07Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A7S2DFF0_9STRA1.340e-645.90Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3PR25_9STRA2.120e-630.95Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A7S2GH68_9STRA4.270e-645.90Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A6H5KIA1_9PHAE8.210e-542.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1214contigA-nodosum_M_contig1214:103048..104494 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog44056.XP_009035729.1
PFAMsPP2C,Pkinase
Model size628
Max annot lvl2759|Eukaryota
KEGG koko:K10147,ko:K17506
KEGG Pathwayko04115,map04115
Hectar predicted targeting categorysignal peptide
Exons2
Evalue1.92e-08
EggNOG OGsCOG0631@1|root,KOG0698@2759|Eukaryota
EC3.1.3.16
Descriptionprotein serine/threonine phosphatase activity
Cds size627
COG categoryT
BRITEko00000,ko00001,ko01000,ko01009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866640.7113626-CDS-A-nodosum_M_contig1214:103047..1036401680866640.7113626-CDS-A-nodosum_M_contig1214:103047..103640Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1214 103048..103640 +
1680866640.7250457-CDS-A-nodosum_M_contig1214:104460..1044941680866640.7250457-CDS-A-nodosum_M_contig1214:104460..104494Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1214 104461..104494 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1214.6.1prot_A-nodosum_M_contig1214.6.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1214 103048..104494 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1214.6.1

>prot_A-nodosum_M_contig1214.6.1 ID=prot_A-nodosum_M_contig1214.6.1|Name=mRNA_A-nodosum_M_contig1214.6.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=209bp
MLGGILGLFSMTMTWRAAQCNPSLNGSLEVRGVHQQSFSQPADGVLVKTT
VSSTFRLVFLVGLEGSGHHYLTPAVNHIRSTGHDYSNECRHMYKRLGIKQ
AMERSPTYYRERVEEARGYMQTLAQYASSLPPKKAGTMLCGRNSYPRLTG
PEKVFSYIDLGTLANLAEDEGVDLRVIYLKRSAKQMIISTTVHRKFYENL
TVNDSSSEG
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mRNA from alignment at A-nodosum_M_contig1214:103048..104494+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1214.6.1 ID=mRNA_A-nodosum_M_contig1214.6.1|Name=mRNA_A-nodosum_M_contig1214.6.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1447bp|location=Sequence derived from alignment at A-nodosum_M_contig1214:103048..104494+ (Ascophyllum nodosum dioecious)
ATGCTTGGGGGTATCTTGGGGCTGTTTTCCATGACGATGACGTGGAGAGC CGCGCAGTGCAATCCCAGCCTCAATGGCTCTTTGGAAGTGCGCGGGGTAC ACCAACAGTCATTTTCGCAGCCCGCTGACGGCGTTCTCGTCAAGACCACC GTCAGCTCAACGTTTAGGCTTGTATTCTTGGTGGGCCTAGAGGGAAGCGG CCATCATTACCTCACTCCCGCTGTCAACCATATCAGGTCGACTGGCCACG ATTACAGCAACGAATGTAGACACATGTACAAAAGATTGGGCATAAAGCAA GCAATGGAGCGGTCTCCAACTTACTATCGGGAGCGTGTCGAAGAAGCAAG GGGCTACATGCAGACACTGGCACAATACGCATCAAGTCTACCACCGAAGA AAGCCGGGACAATGCTTTGCGGCAGGAACTCGTATCCTAGACTAACAGGT CCTGAAAAAGTTTTCAGTTACATCGATTTGGGGACACTGGCGAACCTCGC CGAGGACGAAGGCGTCGATCTACGTGTGATTTATCTCAAGCGATCAGCAA AGCAAATGATCATCTCAACAACCGTGCATCGAAAATTTTACGAGTGAGTC AGCATTCTACATAGGAACGCTTGGGGATAATCTCAGAAGCCTAAATGCGT TGCTCAAGCCTTCGTCGAAATGTTTAAAAGTCGTTCAGGGGTATCATCGG CGCAAGCGTCTTGATTTCTTCGATGGTAATATGCCCCAAAATAGTATCCC AGAGTCGAGTCAACAACCGATTACTTCGTTTAACTCGCGGTGCAGCGATG GCATTGTTGACAGAATTCAGGTTTTCAATGATTCTAAAACCTACGACATT TTGTGTAATATATGCGATGCACTTTTTTGTCACTCACATATCCCGCCTGT CTTCGCGGAAGGCCTCTGGTCGATGCTTGAACTAAAATGTCAAAGGCAGT AACAGCAAGCTTGCGTTTGGATACTGTACAAATTGGAATACTCAAATTAG GCTGAACTTGGAAGCTCAGAGTAGATAGATATAATAACCGTTCACGAAGC TGGACCATATGACTGACTGGCGTTATATCAGTTGTATGGTAGTAACGTTT TATTTTACTAATTAGTTTAGTTTTATCGTCAGCGAGCTCCGATGAATACA CGTGTCATGTAATTCACACCATGCATGTAGCTCTAAACGTTTAGTCAACG ACATGATCACTGTGTCGTACTCTAGACTCTCGATGATTTGGGACCTTAAC TCCTATTTGCTATTTTCGAGGTGTACTGGCTATAGCTTTAGAGCTATAGC TATATTTCCTCTCGAATACTGTAGAAATATTAATAATATTAGTCGCCAAC CCCCACGTCTCTCTGACTTCGCATACCGGTCGCAAATTCTCGCAACCCCT CTGGCCAAGCTAGGAATTTGACCGTAAACGACAGTTCATCTGAGGGC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1214:103048..104494+

>mRNA_A-nodosum_M_contig1214.6.1 ID=mRNA_A-nodosum_M_contig1214.6.1|Name=mRNA_A-nodosum_M_contig1214.6.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=627bp|location=Sequence derived from alignment at A-nodosum_M_contig1214:103048..104494+ (Ascophyllum nodosum dioecious)
ATGCTTGGGGGTATCTTGGGGCTGTTTTCCATGACGATGACGTGGAGAGC
CGCGCAGTGCAATCCCAGCCTCAATGGCTCTTTGGAAGTGCGCGGGGTAC
ACCAACAGTCATTTTCGCAGCCCGCTGACGGCGTTCTCGTCAAGACCACC
GTCAGCTCAACGTTTAGGCTTGTATTCTTGGTGGGCCTAGAGGGAAGCGG
CCATCATTACCTCACTCCCGCTGTCAACCATATCAGGTCGACTGGCCACG
ATTACAGCAACGAATGTAGACACATGTACAAAAGATTGGGCATAAAGCAA
GCAATGGAGCGGTCTCCAACTTACTATCGGGAGCGTGTCGAAGAAGCAAG
GGGCTACATGCAGACACTGGCACAATACGCATCAAGTCTACCACCGAAGA
AAGCCGGGACAATGCTTTGCGGCAGGAACTCGTATCCTAGACTAACAGGT
CCTGAAAAAGTTTTCAGTTACATCGATTTGGGGACACTGGCGAACCTCGC
CGAGGACGAAGGCGTCGATCTACGTGTGATTTATCTCAAGCGATCAGCAA
AGCAAATGATCATCTCAACAACCGTGCATCGAAAATTTTACGAGAATTTG
ACCGTAAACGACAGTTCATCTGAGGGC
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