mRNA_A-nodosum_M_contig12136.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig12136.1.1
Unique NamemRNA_A-nodosum_M_contig12136.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig12136.1.1 vs. uniprot
Match: D7FX60_ECTSI (WD40 repeat-containing protein SMU1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX60_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 2.860e-30
Identity = 59/62 (95.16%), Postives = 61/62 (98.39%), Query Frame = 1 
Query:   55 MQENNLTKTLRTLQAESSVCLNTIDNLDNLMSDINHGRWEAVMPQVSSLSLPLAKLVAVYEQ 240
            ++ENNLTKTLR LQAESSVCLNTIDNLDNLMSDINHGRWEAVMPQVSSLSLPLAKLVAVYEQ
Sbjct:   18 LKENNLTKTLRALQAESSVCLNTIDNLDNLMSDINHGRWEAVMPQVSSLSLPLAKLVAVYEQ 79
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BLAST of mRNA_A-nodosum_M_contig12136.1.1 vs. uniprot
Match: A0A835ZIM7_9STRA (WD40 repeat-containing protein SMU1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIM7_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 2.710e-22
Identity = 44/63 (69.84%), Postives = 57/63 (90.48%), Query Frame = 1 
Query:   52 HMQENNLTKTLRTLQAESSVCLNTIDNLDNLMSDINHGRWEAVMPQVSSLSLPLAKLVAVYEQ 240
            +++E+NLT +L+TLQ+ES VCL+T+DNLDNL SDINHGRWE+V+PQVS L+LPL  LVA+YEQ
Sbjct:   17 YLKEHNLTSSLKTLQSESKVCLDTVDNLDNLSSDINHGRWESVLPQVSGLALPLNTLVALYEQ 79
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BLAST of mRNA_A-nodosum_M_contig12136.1.1 vs. uniprot
Match: A0A7S4DJ43_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DJ43_HETAK)

HSP 1 Score: 90.9 bits (224), Expect = 4.760e-21
Identity = 41/61 (67.21%), Postives = 53/61 (86.89%), Query Frame = 1 
Query:   58 QENNLTKTLRTLQAESSVCLNTIDNLDNLMSDINHGRWEAVMPQVSSLSLPLAKLVAVYEQ 240
            +EN+L +T+RTLQAES V LNT+D+++N +SDINHGRW+AV+PQV+SL LP  KL AVYEQ
Sbjct:   40 KENHLHQTMRTLQAESQVSLNTVDSMENFLSDINHGRWDAVLPQVASLQLPRDKLAAVYEQ 100
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BLAST of mRNA_A-nodosum_M_contig12136.1.1 vs. uniprot
Match: A0A078HV74_BRANA (BnaC05g43480D protein n=1 Tax=Brassica napus TaxID=3708 RepID=A0A078HV74_BRANA)

HSP 1 Score: 79.0 bits (193), Expect = 1.610e-17
Identity = 38/80 (47.50%), Postives = 55/80 (68.75%), Query Frame = 1 
Query:    1 LTHLLRSLLSVCNFSEHHMQENNLTKTLRTLQAESSVCLNTIDNLDNLMSDINHGRWEAVMPQVSSLSLPLAKLVAVYEQ 240
            +T LL + L V        +EN+L +T +TLQ+E  V LNT+D+++  +SDIN+GRW++V+PQVS L LP  KL  +YEQ
Sbjct:    1 MTSLLMTALCVIKIVLQFCKENSLNQTFQTLQSECQVSLNTVDSVETFVSDINNGRWDSVLPQVSQLKLPRNKLEDLYEQ 80
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BLAST of mRNA_A-nodosum_M_contig12136.1.1 vs. uniprot
Match: UPI0015AB9581 (WD40 repeat-containing protein SMU1-like n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015AB9581)

HSP 1 Score: 76.6 bits (187), Expect = 6.400e-16
Identity = 33/70 (47.14%), Postives = 52/70 (74.29%), Query Frame = 1 
Query:   31 VCNFSEHHMQENNLTKTLRTLQAESSVCLNTIDNLDNLMSDINHGRWEAVMPQVSSLSLPLAKLVAVYEQ 240
            V    + +++ENNL++TL+TLQ E+S+ LNT+D++D+ + DIN+G W+ V+  V SL LP  KL+ +YEQ
Sbjct:   10 VIRLIQQYLKENNLSRTLQTLQEETSISLNTVDSVDSFVQDINNGHWDTVLKVVQSLKLPDKKLIDLYEQ 79
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BLAST of mRNA_A-nodosum_M_contig12136.1.1 vs. uniprot
Match: A0A8H7RYM9_9FUNG (Uncharacterized protein n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7RYM9_9FUNG)

HSP 1 Score: 80.1 bits (196), Expect = 9.220e-16
Identity = 36/62 (58.06%), Postives = 47/62 (75.81%), Query Frame = 1 
Query:   55 MQENNLTKTLRTLQAESSVCLNTIDNLDNLMSDINHGRWEAVMPQVSSLSLPLAKLVAVYEQ 240
            ++ENNL +TL  LQ ESSV  NT+DN DNL+ DINHGRW+AV+ QV ++ +P  KL  +YEQ
Sbjct:   19 LRENNLERTLGALQKESSVTFNTVDNKDNLLQDINHGRWDAVLRQVQNMKIPPMKLYDLYEQ 80
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BLAST of mRNA_A-nodosum_M_contig12136.1.1 vs. uniprot
Match: A0A150FYG8_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150FYG8_GONPE)

HSP 1 Score: 78.6 bits (192), Expect = 1.070e-15
Identity = 36/73 (49.32%), Postives = 51/73 (69.86%), Query Frame = 1 
Query:   22 LLSVCNFSEHHMQENNLTKTLRTLQAESSVCLNTIDNLDNLMSDINHGRWEAVMPQVSSLSLPLAKLVAVYEQ 240
            +LSV        +EN LT++   +Q E  V LNT+D+++N +SDINHGRW+AV+PQV+ L LP +KL  +YEQ
Sbjct:   72 VLSVIKIILQFCKENGLTESFNVIQNECQVSLNTVDSVENFVSDINHGRWDAVLPQVAQLKLPRSKLEDLYEQ 144
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BLAST of mRNA_A-nodosum_M_contig12136.1.1 vs. uniprot
Match: K8YWD5_NANGC (WD40 repeat-containing protein SMU1 (Fragment) n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YWD5_NANGC)

HSP 1 Score: 78.2 bits (191), Expect = 4.410e-15
Identity = 32/61 (52.46%), Postives = 49/61 (80.33%), Query Frame = 1 
Query:   58 QENNLTKTLRTLQAESSVCLNTIDNLDNLMSDINHGRWEAVMPQVSSLSLPLAKLVAVYEQ 240
            +ENNL +TL TLQ+ES V +N++D+++N +SD+  GRW++V+PQ + L LP  KL+A+YEQ
Sbjct:   78 KENNLHRTLHTLQSESQVAMNSVDSMENFLSDVTQGRWDSVLPQAAGLQLPQDKLLALYEQ 138
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BLAST of mRNA_A-nodosum_M_contig12136.1.1 vs. uniprot
Match: A0A8J4BEX1_9CHLO (Uncharacterized protein n=4 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4BEX1_9CHLO)

HSP 1 Score: 75.5 bits (184), Expect = 8.220e-15
Identity = 36/79 (45.57%), Postives = 54/79 (68.35%), Query Frame = 1 
Query:    4 THLLRSLLSVCNFSEHHMQENNLTKTLRTLQAESSVCLNTIDNLDNLMSDINHGRWEAVMPQVSSLSLPLAKLVAVYEQ 240
            T +++ +L  C       +EN LT++   LQ E  V LNT+D+++N +SDIN+GRW+AV+PQV+ L LP +KL  +YEQ
Sbjct:    8 TDVIKIILQFC-------KENGLTESFNALQNECQVSLNTVDSVENFVSDINNGRWDAVLPQVAQLKLPRSKLEDLYEQ 79
[Close]
BLAST of mRNA_A-nodosum_M_contig12136.1.1 vs. uniprot
Match: A8HPU4_CHLRE (WD40 repeat-containing protein SMU1 n=3 Tax=Chlamydomonas TaxID=3052 RepID=A8HPU4_CHLRE)

HSP 1 Score: 77.0 bits (188), Expect = 1.110e-14
Identity = 37/79 (46.84%), Postives = 54/79 (68.35%), Query Frame = 1 
Query:    4 THLLRSLLSVCNFSEHHMQENNLTKTLRTLQAESSVCLNTIDNLDNLMSDINHGRWEAVMPQVSSLSLPLAKLVAVYEQ 240
            T +++ +L  C       +EN LT +   +Q E  V LNT+D++DNL++DIN+GRW+AV+PQV+ L LP AKL  +YEQ
Sbjct:    8 TDVIKIILQFC-------KENGLTDSFNAIQNECQVSLNTVDSVDNLVADINNGRWDAVLPQVAQLKLPRAKLEDLYEQ 79
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig12136.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FX60_ECTSI2.860e-3095.16WD40 repeat-containing protein SMU1 n=2 Tax=Ectoca... [more]
A0A835ZIM7_9STRA2.710e-2269.84WD40 repeat-containing protein SMU1 n=1 Tax=Tribon... [more]
A0A7S4DJ43_HETAK4.760e-2167.21Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A078HV74_BRANA1.610e-1747.50BnaC05g43480D protein n=1 Tax=Brassica napus TaxID... [more]
UPI0015AB95816.400e-1647.14WD40 repeat-containing protein SMU1-like n=1 Tax=S... [more]
A0A8H7RYM9_9FUNG9.220e-1658.06Uncharacterized protein n=1 Tax=Mucor circinatus T... [more]
A0A150FYG8_GONPE1.070e-1549.32Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
K8YWD5_NANGC4.410e-1552.46WD40 repeat-containing protein SMU1 (Fragment) n=3... [more]
A0A8J4BEX1_9CHLO8.220e-1545.57Uncharacterized protein n=4 Tax=Volvox africanus T... [more]
A8HPU4_CHLRE1.110e-1446.84WD40 repeat-containing protein SMU1 n=3 Tax=Chlamy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig12136contigA-nodosum_M_contig12136:886..1645 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FX60
Preferred nameSMU1
PFAMsWD40
Model size240
Max annot lvl2759|Eukaryota
KEGG koko:K13111
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000375,GO:0000377,GO:0000381,GO:0000398,GO:0002119,GO:0002164,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005737,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007154,GO:0007267,GO:0007268,GO:0007274,GO:0007275,GO:0007399,GO:0007517,GO:0007528,GO:0007610,GO:0007638,GO:0008150,GO:0008152,GO:0008380,GO:0009605,GO:0009612,GO:0009628,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009887,GO:0009987,GO:0010467,GO:0010468,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0022008,GO:0023052,GO:0030154,GO:0030182,GO:0031323,GO:0031461,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034641,GO:0040011,GO:0042802,GO:0042803,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043484,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0046983,GO:0048024,GO:0048468,GO:0048513,GO:0048644,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050684,GO:0050789,GO:0050794,GO:0050808,GO:0050896,GO:0051171,GO:0051252,GO:0060255,GO:0061061,GO:0065007,GO:0070013,GO:0071005,GO:0071011,GO:0071704,GO:0071840,GO:0072553,GO:0080008,GO:0080090,GO:0090304,GO:0098916,GO:0099172,GO:0099536,GO:0099537,GO:1901360,GO:1902494,GO:1903311,GO:1990234,GO:1990904
Exons2
Evalue4.68e-31
EggNOG OGsKOG0275@1|root,KOG0275@2759|Eukaryota
Descriptionregulation of alternative mRNA splicing, via spliceosome
Cds size240
COG categoryS
BRITEko00000,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866640.6367893-CDS-A-nodosum_M_contig12136:885..10741680866640.6367893-CDS-A-nodosum_M_contig12136:885..1074Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig12136 886..1074 +
1680866640.6471636-CDS-A-nodosum_M_contig12136:1594..16451680866640.6471636-CDS-A-nodosum_M_contig12136:1594..1645Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig12136 1595..1645 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig12136.1.1prot_A-nodosum_M_contig12136.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig12136 886..1645 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig12136.1.1

>prot_A-nodosum_M_contig12136.1.1 ID=prot_A-nodosum_M_contig12136.1.1|Name=mRNA_A-nodosum_M_contig12136.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=80bp
LTHLLRSLLSVCNFSEHHMQENNLTKTLRTLQAESSVCLNTIDNLDNLMS
DINHGRWEAVMPQVSSLSLPLAKLVAVYEQ
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mRNA from alignment at A-nodosum_M_contig12136:886..1645+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig12136.1.1 ID=mRNA_A-nodosum_M_contig12136.1.1|Name=mRNA_A-nodosum_M_contig12136.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=760bp|location=Sequence derived from alignment at A-nodosum_M_contig12136:886..1645+ (Ascophyllum nodosum dioecious)
CTCACCCACCTCTTGCGCTCACTACTTTCTGTCTGTAACTTCTCCGAACA
CCACATGCAGGAAAACAACCTCACCAAGACCCTCCGTACGCTCCAAGCAG
AGTCTAGCGTGTGCCTCAACACCATCGACAACCTCGACAACCTCATGAGC
GACATCAACCACGGGCGCTGGGAGGCCGTCATGCCACAGGTTACGTGACG
CGCGCGCCGGTACACAATAGCAGCAACAGCGCTATAAAGAAGGGCATCCC
CTGTCGTATCTCATTCGCCAAGTCATCTGACCTCGTGGTTTCACCTCCGG
CGGCAGGTTTCGTGCATGCTTGATTCATACTATAAATATTACTAAGTATT
TAGCACAGCAGTGAAACAGACGGTAGGGTTGAGAAACCGTCGATTGCTGT
CTCCCCATGCAATACGACGCCCGACTGCTGTCCCGGGCCGTTTGTTCTGC
GGCAACGATGCCGGCGGTTTTCCAAACACGCTTGCGCCTACCCTGCAGGA
TCCTCCCTCCCCCCCAGTATTAAAAGTGACGTTATGCCTGCCCCTTTCTC
CTGTAGGCTATAGCTTTCTAAGGTGTCTGGATATATCAGGACTGACCTAA
CGCCGTTGTCGACCTCCTCCTCCTTGATGCTCCTGCCGATGCTGTCAATG
TTGGTGGTCCTGCTGGCTCTGGCGCTGCCACTACTCTTACTATTACACTA
TTACACTAGGTTTCATCGCTGTCCCTCCCGCTGGCTAAGTTGGTGGCCGT
TTACGAGCAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig12136:886..1645+

>mRNA_A-nodosum_M_contig12136.1.1 ID=mRNA_A-nodosum_M_contig12136.1.1|Name=mRNA_A-nodosum_M_contig12136.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=240bp|location=Sequence derived from alignment at A-nodosum_M_contig12136:886..1645+ (Ascophyllum nodosum dioecious)
CTCACCCACCTCTTGCGCTCACTACTTTCTGTCTGTAACTTCTCCGAACA
CCACATGCAGGAAAACAACCTCACCAAGACCCTCCGTACGCTCCAAGCAG
AGTCTAGCGTGTGCCTCAACACCATCGACAACCTCGACAACCTCATGAGC
GACATCAACCACGGGCGCTGGGAGGCCGTCATGCCACAGGTTTCATCGCT
GTCCCTCCCGCTGGCTAAGTTGGTGGCCGTTTACGAGCAG
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