mRNA_A-nodosum_M_contig1213.12.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1213.12.1
Unique NamemRNA_A-nodosum_M_contig1213.12.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1213.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1213contigA-nodosum_M_contig1213:202108..205006 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1803
Hectar predicted targeting categorysignal peptide
Exons4
Cds size420
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1213.12.1prot_A-nodosum_M_contig1213.12.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1213 203471..204986 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866640.5481954-UTR-A-nodosum_M_contig1213:202107..2034701680866640.5481954-UTR-A-nodosum_M_contig1213:202107..203470Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1213 202108..203470 -
1680866640.6059065-UTR-A-nodosum_M_contig1213:204986..2050061680866640.6059065-UTR-A-nodosum_M_contig1213:204986..205006Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1213 204987..205006 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866640.5575182-CDS-A-nodosum_M_contig1213:203470..2034981680866640.5575182-CDS-A-nodosum_M_contig1213:203470..203498Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1213 203471..203498 -
1680866640.565796-CDS-A-nodosum_M_contig1213:204012..2042161680866640.565796-CDS-A-nodosum_M_contig1213:204012..204216Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1213 204013..204216 -
1680866640.57623-CDS-A-nodosum_M_contig1213:204534..2046701680866640.57623-CDS-A-nodosum_M_contig1213:204534..204670Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1213 204535..204670 -
1680866640.5962245-CDS-A-nodosum_M_contig1213:204934..2049861680866640.5962245-CDS-A-nodosum_M_contig1213:204934..204986Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1213 204935..204986 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1213.12.1

>prot_A-nodosum_M_contig1213.12.1 ID=prot_A-nodosum_M_contig1213.12.1|Name=mRNA_A-nodosum_M_contig1213.12.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=140bp
MIIVIHGIALFFGNFFWGQWIASLITIAMGCVVLFQFNKCAYTAAAFLYP
IAMIFDILSVFFWIMCAETIVDYIADDDISEDDAERSMRLLSTVPGLGAV
CLLLGTIVTCAATRNWEKSGAADAVAVVEYRLPTMPPIV*
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mRNA from alignment at A-nodosum_M_contig1213:202108..205006-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1213.12.1 ID=mRNA_A-nodosum_M_contig1213.12.1|Name=mRNA_A-nodosum_M_contig1213.12.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2899bp|location=Sequence derived from alignment at A-nodosum_M_contig1213:202108..205006- (Ascophyllum nodosum dioecious)
AGACGCGGCGGATATCGGGAATGATAATCGTTATCCATGGCATCGCTCTC
TTCTTCGGCAATTTTTTCTGGGGTAAGAAGCAATTCATCTAGTTTTGGTT
TTGTCTGTTTTCTGAACCGGTCCAATTCACCTTCGGGGAGAGAGATAGGT
TGGTAAAACACGCTGCCCAATTCCAAGCGAATCGCGCGTTCTTTCTGTTG
CTTCGTTCGACATTCGTTCGCATCCCCGAAATGAATGGTGCGAGGTAGAG
GTGCTATTTTGCCTCTCATGATCTGATTAATGCTCACCCCCCCCCCCCCC
CTCACCCCCCCCACCTCCGGTGTTTACCACAAACAGGCCAATGGATCGCC
TCCCTCATCACTATTGCCATGGGCTGCGTTGTTTTGTTCCAGTTTAACAA
ATGCGCATATACAGCGGCTGCGTTTTTGTACCCGATCGCTATGATCTTTG
ACATCTTATCGGTCTTCTTCTGGTGAGTTGATCGGACAGCAGCACCACAC
AACGTTTTTCTGGGGCAAATTGTCCGTGTTTTGGGTGCCTCTATAGCGAG
CTATCCTCCCGTCCCGTAGGTTGCCGGCATAGCAGCAAGATTTCCAACCC
CCGAAAAAATCATCGAACTTTTGACAGCCTCTGATAGGTCGGCTCCGAGT
CTTTCGAACAATCTGCCGAAGATCGCATTTGCATGCCAACGCCCACGACC
ATGTTTCCACAGCAACCCCCGACCCCTCCCGTCCACTGCCTTCTCTTTGC
TATATTAACCTTTACCACGCATCCACTGCTCCTCCTCCAGGATAATGTGT
GCTGAAACAATTGTGGACTACATTGCCGACGATGACATCAGCGAGGATGA
TGCCGAGAGATCAATGAGGCTGTTGTCTACCGTCCCTGGCCTTGGAGCTG
TGTGTCTCCTTCTTGGAACCATTGTCACCTGTGCGGCCACCCGCAACTGG
GAAAAAAGCGGTGCAGCCGATGCGGTGGCCGTCGTCGAGTACAGGTTAGG
CTATCGGTGTGGCTTTCAAGGGAATATGTAGCCAGGGGATGGGCGTGGAT
GGGGTGAAATTGAGCGTTTTCACAAGGTTTCTAAAAGCGTGGTGGTCAGC
CCCTACTTATGATGTGTTTCCCCTAAATATTCTACAGACATAAGGACGAC
CTGATGGACACATCGAAGGTTGACGTGACGGGCAATTTTTTGTTAACAGG
ACGTTGTTACCACCAATCAAGCAAGGGGAGGGCAAGTGTATACGTACTCA
CTAACTACTGGTATAATATGATTAGCTTTGGTGTATGATTCAGACACCCG
AGCTGGTTAGAGCCTATATATACACTAACAACTTGTGTATTTTTTTTTAA
GTTTGGGTCATTTTGTCGTGCGCTGTTCTTCAGTCTACACCCACCTACTA
CGGCCCCCAGTTGGCCGCATTCCTCATTCCTCTGGGAGTTGACGCACTTA
TATGGCCCTCCTGTCGTTCCGTGGCCCAAAATGTTCTTTTACAATTTTCT
CCCGCCAGGTTGCCTACCATGCCGCCTATCGTCTAACCAGCGCGACACAG
CAGATACCCAGGAGCACTACAAGAGTAACAACGGGGCCAGTCTGAAGAAT
CATCAGATTCGTCGCTTGGATGAAATCCCGAAAAAGAAAAGCAGACCTAT
ATGGTCGTGAACTGAATAGCAAAACGAAGTACTTTGTTCCTCGATGTTTT
GAAACGGCTCGCTCTACGCGAAGAGCTTGCATGACACTATTATTGCGCTG
TAAAGGCGACCCCGTGAGTTGCTCGAACGATGCCACGCATGGCAGCCCGG
CCTTGTGCGCTTGTATTGTATTATATAAAGAGTACTCTCAATGCTATCCG
TATTTTTTTGCATGAAGCCATGAGGTGCGTAGAATATAAACTATTAATAG
TAGGGATATGGCGATGTTAGGGCCTTCGGGCATAGACGTTAGGTCTATGT
TTTGTTGGTGTCAAAGTATAATCGCATTTTCTGTGTCGCATCCCGAAGTC
TGAAGCACACATCGTCAGTTAGAATAAGAGTGGTTATCTGGTATAAATAG
TCATTTGCGGCATTTGACGACTGACTGAGCAATTTAATTTGTTGTGCGTT
TTTTTGTCTGAGAGCATCAACGTTTCCAAGTCGTCAGAGGAATAGTACGG
GAAGCTACGATCAGTGTCTGAGGCCTCCGTGCACAATCGGTGGTTCGGAT
AATTTCAATTGTCGTGGCTACCAGGTACAGCAGTACAACGCCGGAGTGTG
CCATCGTCATGTAAAAAGTATCCAAGTATAAAGTATGGGGCGGGGCGAAT
GCGACGAGCAGAGCGTGTAGCGCTGCCCAATCGTATATAGTAAGTAAGGC
GATTCGAAGTCGCACCTCTGTGTAACTGGGTTATTCGGTTGGAGAGTTTC
AACTACTGTGGTGACATCGTGCGTTGTATTTTGAACTGTCCGTCTGTCTT
CGCCATGTTTGTTCGTCCTTCATTCACATATTAATTCACATACTATGTGT
CTGATTTTGCCCGGCGCCATCTTTGTCGCCGTAGGGCTAGTAGCTATACT
TTTATTGTTATCGCACTGCTATCCGTTGTGAAAATGTTTTTGGCTCTTGG
TATCACTGATCGTTATATATTGCTTCTTTAGACAAACTAAACTATATAAA
GCTGAATAAGACATGGCATGTCTCTAGTCTAATAATGTAGAAAATATAAA
TAATGTAGAGCTACGCGACCGGTATAAAGCAAACGCAAGAAGAGGGCTAC
GTGTGCACAGAAGCACGACAAAAACGCGGTTGAGCAGTCAAGGAGGGGGG
ATAAACGGGGGCCGCCAGTAGTACAAGAGAGAAGATATAAAAGAGAGCCA
GTCAGGATCAAACGTTTTGATGCGTTAAGGGGGGCAGATGATAATGTCG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1213:202108..205006-

>mRNA_A-nodosum_M_contig1213.12.1 ID=mRNA_A-nodosum_M_contig1213.12.1|Name=mRNA_A-nodosum_M_contig1213.12.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=420bp|location=Sequence derived from alignment at A-nodosum_M_contig1213:202108..205006- (Ascophyllum nodosum dioecious)
ATGATAATCGTTATCCATGGCATCGCTCTCTTCTTCGGCAATTTTTTCTG
GGGCCAATGGATCGCCTCCCTCATCACTATTGCCATGGGCTGCGTTGTTT
TGTTCCAGTTTAACAAATGCGCATATACAGCGGCTGCGTTTTTGTACCCG
ATCGCTATGATCTTTGACATCTTATCGGTCTTCTTCTGGATAATGTGTGC
TGAAACAATTGTGGACTACATTGCCGACGATGACATCAGCGAGGATGATG
CCGAGAGATCAATGAGGCTGTTGTCTACCGTCCCTGGCCTTGGAGCTGTG
TGTCTCCTTCTTGGAACCATTGTCACCTGTGCGGCCACCCGCAACTGGGA
AAAAAGCGGTGCAGCCGATGCGGTGGCCGTCGTCGAGTACAGGTTGCCTA
CCATGCCGCCTATCGTCTAA
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