mRNA_A-nodosum_M_contig1210.7.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1210.7.1
Unique NamemRNA_A-nodosum_M_contig1210.7.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1210.7.1 vs. uniprot
Match: A0A6H5KX32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX32_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 4.020e-35
Identity = 101/247 (40.89%), Postives = 133/247 (53.85%), Query Frame = 2 
Query:  497 FSHCANDIGGTTHVAQKPPSCDVQVLIYTACLRAFCFCVIIGTNALESFDGSIAALVTKKNDF*TSHIGRAMLAILKRCFPGGYVALVELLRGRIELAPSTDQAKTAAARHINSANHIKENETVCSEAKLQ---ELNLKKGDRRAKISKAAKANAVALKTASAVQLFFS-GRTPEASNAGGAAGRTRQVPGEVSCYDASSSKHKRTEKEFTATMEPPRKKKRQSGKCKGCLTTGVSDAFLAAMNHKR 1225
            FS CAN+ G      +K P+C  QVL+ TACLRAF FC++IGTNALESF+GS+AA+V+K++DF  SH+GRA LA+LKRCFPGGY  +V  +R    L P T++A+     H   A H++    V S A ++   +  LK+  RR+ +     A   A    S  +L+ S G    A   GG AG    +      YD   S   R        M  P K+KR SG CK C   GV   +LA   H R
Sbjct:  485 FSPCANEAGVNMSTKRKCPACAEQVLVNTACLRAFSFCLVIGTNALESFNGSVAAMVSKRSDFYISHVGRAQLALLKRCFPGGYREVVRRIRKACGLPPLTNRAEEETLVHQRKARHLEAGHEVWSSAAVRVGSDSKLKRKHRRSLVQTKHGAELKAANEKSQAELYKSVGEDKRARAKGGDAGANGLLS-----YDRGGSNASRN---LNEGMVAPAKRKRTSGACKECGKFGVPAFWLAQRQHSR 723
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BLAST of mRNA_A-nodosum_M_contig1210.7.1 vs. uniprot
Match: A0A6H5KGM5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGM5_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 6.040e-33
Identity = 64/118 (54.24%), Postives = 84/118 (71.19%), Query Frame = 2 
Query:  497 FSHCANDIGGTTHVAQKPPSCDVQVLIYTACLRAFCFCVIIGTNALESFDGSIAALVTKKNDF*TSHIGRAMLAILKRCFPGGYVALVELLRGRIELAPSTDQAKTAAARHINSANHI 850
            FS CAN+ G      +K P+C VQVL+ TACLRAF FC++IGTNALESF+GS+AA+V+K++DF  SH+GRA LA+LKRCFPGGY  +V  +R    L P T++A+     H   A H+
Sbjct:   35 FSPCANEAGVNMSTKRKCPACAVQVLVNTACLRAFSFCLVIGTNALESFNGSVAAMVSKRSDFYISHVGRAQLALLKRCFPGGYREVVRRIRKACGLPPLTNRAEEETLVHQRKARHL 152
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BLAST of mRNA_A-nodosum_M_contig1210.7.1 vs. uniprot
Match: A0A6H5JYT6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYT6_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 5.860e-30
Identity = 67/131 (51.15%), Postives = 89/131 (67.94%), Query Frame = 2 
Query:  497 FSHCANDIGGTTHVAQKPPSCDVQVLIYTACLRAFCFCVIIGTNALESFDGSIAALVTKKNDF*TSHIGRAMLAILKRCFPGGYVALVELLRGRIELAPSTDQAKTAAARHINSANHIKENETVCSEAKLQ 889
            FS CAN+ G      +K P+C  QVL+ TACLRAF FC++IGTNALESF+GS+AA+V+K++DF  SH+GRA LA+LKRCFPGGY  +V  +R    L P T++A+     H   A H+K    V S A ++
Sbjct:  343 FSPCANEAGVNMSTKRKCPACAEQVLVNTACLRAFSFCLVIGTNALESFNGSVAAMVSKRSDFYISHVGRAQLALLKRCFPGGYREVVRRIRKACGLPPLTNRAEEETLVHQRKARHLKAGHEVWSSAAVR 473
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BLAST of mRNA_A-nodosum_M_contig1210.7.1 vs. uniprot
Match: A0A6H5JRT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT7_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 1.360e-9
Identity = 37/111 (33.33%), Postives = 55/111 (49.55%), Query Frame = 2 
Query:  497 FSHCANDIGGTTHVAQKPPSCDVQVLIYTACLRAFCFCVIIGTNALESFDGSIAALVTKKNDF*TSHIGRAMLAILKRCFPGGYVALVELLRGRIELAPSTDQAKTAAARH 829
            FSHC N +GG          CD       AC+R+  F   +GT  LES +GSIA+  +K+NDF  +H  RA +A++ R    G + +  L+R  + L   +  A    + H
Sbjct:   54 FSHCCNSLGGNIRSTHPCGPCDSHTAFAVACIRSTAFMPDLGTQFLESVNGSIASKASKRNDFPLTHWPRAQIAVMNRTLRCGTLGVANLIREELRLPILSAPAAKVVSDH 164
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BLAST of mRNA_A-nodosum_M_contig1210.7.1 vs. uniprot
Match: A0A6H5L2W2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2W2_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 9.390e-7
Identity = 35/85 (41.18%), Postives = 47/85 (55.29%), Query Frame = 2 
Query:  554 SCDVQVLIYTACLRAFCFCVIIGTNALESFDGSIAALVTKKNDF*TSHIGRAMLAILKRCFPGGYVALVELLRGRIELAPSTDQA 808
            +CD  V    AC+RA  F   +GT  LES +GSIAA  TK+ DF  +H  RA +A++ R  PGG   +  L+R  + L   T  A
Sbjct: 1115 TCDSHVAFSVACIRAPAFMPDLGTQFLESVNGSIAAKATKRCDFPVTHYPRAQIAVMNRTLPGGAEEVANLIREEMALPRLTPPA 1199
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1210.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KX32_9PHAE4.020e-3540.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGM5_9PHAE6.040e-3354.24Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JYT6_9PHAE5.860e-3051.15Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JRT7_9PHAE1.360e-933.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2W2_9PHAE9.390e-741.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1210contigA-nodosum_M_contig1210:75941..79368 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1970
Hectar predicted targeting categoryother localisation
Exons4
Cds size642
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1210.7.1prot_A-nodosum_M_contig1210.7.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1210 78108..78749 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866639.3457723-UTR-A-nodosum_M_contig1210:75940..761191680866639.3457723-UTR-A-nodosum_M_contig1210:75940..76119Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1210 75941..76119 +
1680866639.4381347-UTR-A-nodosum_M_contig1210:76729..769091680866639.4381347-UTR-A-nodosum_M_contig1210:76729..76909Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1210 76730..76909 +
1680866639.4500911-UTR-A-nodosum_M_contig1210:77083..771721680866639.4500911-UTR-A-nodosum_M_contig1210:77083..77172Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1210 77084..77172 +
1680866639.4665055-UTR-A-nodosum_M_contig1210:77846..781071680866639.4665055-UTR-A-nodosum_M_contig1210:77846..78107Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1210 77847..78107 +
1680866639.4887362-UTR-A-nodosum_M_contig1210:78749..793681680866639.4887362-UTR-A-nodosum_M_contig1210:78749..79368Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1210 78750..79368 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866639.4797933-CDS-A-nodosum_M_contig1210:78107..787491680866639.4797933-CDS-A-nodosum_M_contig1210:78107..78749Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1210 78108..78749 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1210.7.1

>prot_A-nodosum_M_contig1210.7.1 ID=prot_A-nodosum_M_contig1210.7.1|Name=mRNA_A-nodosum_M_contig1210.7.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=214bp
MLAILKRCFPGGYVALVELLRGRIELAPSTDQAKTAAARHINSANHIKEN
ETVCSEAKLQELNLKKGDRRAKISKAAKANAVALKTASAVQLFFSGRTPE
ASNAGGAAGRTRQVPGEVSCYDASSSKHKRTEKEFTATMEPPRKKKRQSG
KCKGCLTTGVSDAFLAAMNHKRKLRKNAAMCKKPGSVSRPLHQRMRLLSL
RRLLPKREGLERR*
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mRNA from alignment at A-nodosum_M_contig1210:75941..79368+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1210.7.1 ID=mRNA_A-nodosum_M_contig1210.7.1|Name=mRNA_A-nodosum_M_contig1210.7.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3428bp|location=Sequence derived from alignment at A-nodosum_M_contig1210:75941..79368+ (Ascophyllum nodosum dioecious)
GGAGCCTGTCGCGCCCGCAAAGAAGCAGCCAAAGGTTTCCCTTGCTGCTT
GCATCGGGTCGGCATCGGTCGTGCCGAGTCTCCTGAAGGCGTTGACTAGG
TCCAAAACAGTGTTCACAAAGAAGGAAGCGGCGTTCAAAGAAACCGGTTT
TCAAGTCAGGAAGATGGCAAAGGAGATGAGTAAGATGTTGGAAGAGCAAG
GAGATAGGAAAAAGAGGGCGCGGTGCAGTTAGCGAAGGTCTCATATTAAG
AGGAGGGGGTTGCCAAAGTTGTGTAGGTCTACGCGAATGGGGTGGAGCTC
GTCGCCAGGACTATTGCCGCTGTAGATGACGTCATTCGAGACACAAACGA
GGTGGTAAATTTTGCATTTGGTCATATATTGCGTATCGTTTGCGTTTTAT
ACTATCATCGTTAAAAACAACCTAAAAAACAACACATGTATTTACCAGTG
TCTCTGGGTACTTTAAAAACAACGAATCCAGCCGTGGTCACAAGATAGAC
GCCATCTTTACATGCCTTGCTTGTGTGTCTCGCCACTGAGTGGGTTCAGC
AGTCCCACTCTCGTGCATCTCTCATCACCTCCAGCGTACCGAATCTGTTG
CTTACTCACGCTCGTCCATCTCAATCTGCTCGCTTTCCGCGGCGGTGCCC
CGAGGCTGGGAAAAACTCACCGGGGTTGAGCTTAAAGCCCATCACCACCA
AATAGGCCACAGGCAGCGTCCCAATCCATCGTTGTCGGTTCGGTCCGTCA
CCCTTTACAAATGCTCCATCGTTGTCGTTCGGCCGACAGGACATGGCCAG
GAAGTCCGATAGAGAAAAAATCAAGATGAGGATCGATCAAGGCGTTTTCA
AAGCAGCACTCGGAGAAAACGGTGATCTAGGCACCGTATTGCAATCAGGG
TTAGGTGATAAGGAGCCAGGCGAGAAAGTACATGCCCCGGCGACTCTCTG
GATTACAACGAAGGTCAAAGTAAGAGACAAAGCACTTGCATATGCACCTC
ACCTTAAGCAGCCTTTTGCAACTTGTTAGTCGTTATTTACCACGAAGGTA
ATGGCATGCCGTACACAAGCAAACTCGCACTTTTACTGGCGACGTAGCGA
CCGTATATTGCCTGCCGTTCACTTCTGCCTTCGCGTTGACCAGGACCAGA
TGCAGAAGTTCACGGCAGCAGTGCGAGAGGTCACCAACTTGAAAGCGGCT
GTGAGGGAAGCGACGAACGTTACCATATAAAGGTGGTCTCAACCCACATC
GACCAGAAAAATATGCGAGTCTGAAAATAGTCGGGGATCACAGCGTTTGG
TTGCGTGGAGAGGACTGTTTTGTTGCGCAGGTTGTCTCTTTGCTTGTAAA
TCACAGATCCTTCGTTCCAATATATCCGGTTGACAACATGCTTCACTATC
GAGCTCTCTCGATTTTGGAACGAACTTTTGCGAGTTATTTTAAAAAGAAC
AAGATGACGTTAAACCAGATAACGATAATTCACATAGTACACGCTCTTCT
ACAAGTTATACTTGTTGGATATGCTTAAACGAAAGGGCTTGCCCACGGCG
ATAGTGTAATACTTCGGACGAGGTCATAGACCAACTCCCGCCCCCGTTAT
AGCATAATGGGAGTTGTTATCATGATGATAATTGATTCCTAGCAACATTA
CTGGCCATTTTGACTTTTCTTGAAATCGTTGTAACTCTTGATTGGCGCAT
CTGACTCTTTTATTTACGTGATGACATGGCTCAGAGCTTTCGTTTGAGCC
GCCGCCAAACCAAATCGGAGAGGTGGTTCATGAAGTAAGATTTCGGGCCT
CGTTCTAAAAAGAAACGTTCTCAAACAACTCAAAACAGTTTTACTTGCAG
TTTCTATATAGTGTCTACAGCGTCGCCGCATGCTTCTTACGATCTGTCCG
CCGCAGAGGTACTCTACGCCACTTGTCAAAACGAGAGAGCGGGCCTAGCA
CGTTTTCTCCCACTGCGCGAACGACATAGGAGGAACCACGCACGTCGCGC
AGAAGCCCCCGTCGTGCGATGTGCAGGTTCTCATATACACCGCATGCCTG
AGAGCCTTTTGTTTCTGCGTGATTATCGGCACAAACGCATTGGAGAGCTT
CGACGGGAGCATCGCCGCGCTGGTGACGAAGAAAAACGACTTCTAGACTA
GCCACATCGGACGAGCGATGCTTGCAATCCTCAAGAGATGTTTTCCAGGA
GGATATGTTGCGTTGGTTGAGCTGCTTCGAGGTAGAATTGAGCTGGCGCC
GTCGACCGATCAGGCAAAAACAGCGGCCGCACGACATATCAATAGCGCGA
ATCACATTAAGGAGAATGAAACGGTCTGTTCGGAGGCCAAGTTGCAGGAG
TTGAACCTGAAAAAAGGCGATCGAAGGGCCAAAATCAGTAAAGCAGCGAA
GGCAAACGCCGTTGCGCTCAAAACGGCGAGCGCTGTCCAGCTTTTCTTTT
CCGGGAGGACCCCGGAAGCATCCAACGCGGGTGGTGCTGCCGGGCGTACT
AGGCAAGTACCCGGTGAGGTATCCTGTTACGACGCAAGCAGCAGCAAGCA
CAAGAGGACAGAGAAGGAGTTTACAGCTACAATGGAGCCCCCTCGAAAGA
AGAAACGTCAGAGCGGCAAGTGTAAGGGATGCCTTACAACCGGTGTATCG
GACGCGTTCCTAGCGGCAATGAATCATAAAAGGAAGCTGAGGAAAAATGC
CGCGATGTGCAAGAAACCTGGAAGCGTGAGCAGGCCGCTGCATCAACGAA
TGCGACTGTTGTCGTTGCGGCGGCTATTGCCAAAACGAGAAGGTCTCGAG
CGGCGGTAGGAGAAGAGACAAAAGCAGCGATAGGAGACACGGTCGCAGCA
CACGCAAACGCGCCTCTGGGATTTGCGGGAAGGCAAACAAAGACGTCGAA
CTGCGCTATGGCCGCATCACAGGCGAAGCGTTCTAGGGGGGTGCACGAAG
AAGAGGCCAAAGAGACAAAGGGCGTAGCGGCTGCAACATAGGCGAGGGGT
ACATGCGCCTCGGATGTAGGTCAGGCTAAGCAGGCTAGGGGCACAGTGGC
TGTACCACGGGAATGCATGCCGAGCGACGCGGCGGGAGAGGGTTCCCTGT
CCAGATCCGGGAGAGTACGAAAAAAGAAGATACTGGCAGACATGTGACCT
TATGGTGGAGGAATTGCGGTGAGTACATCATGTGGTGAGGATGAGCGGCG
ACGCCTCGGGGTTGGGGAGCCGTCGGCGCTTTTGGGTATAGATACAAGCG
CAGGTTTGTTTTTGGTGCTCTTCCATTATTTTAATTCTTCATGCACATTT
CTCCCGAGTTGCGAGGGGGGGGGTGGCGGTTTGCCGGCAGGCTCTCTAGT
CACGTTTGCGGCAATTTTGGTTCGCCACCAAGCGGAACGGGAGGGCGGGG
ATTTTGTTTTGGTGTCTTTTAACAATTT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1210:75941..79368+

>mRNA_A-nodosum_M_contig1210.7.1 ID=mRNA_A-nodosum_M_contig1210.7.1|Name=mRNA_A-nodosum_M_contig1210.7.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at A-nodosum_M_contig1210:75941..79368+ (Ascophyllum nodosum dioecious)
ATGCTTGCAATCCTCAAGAGATGTTTTCCAGGAGGATATGTTGCGTTGGT
TGAGCTGCTTCGAGGTAGAATTGAGCTGGCGCCGTCGACCGATCAGGCAA
AAACAGCGGCCGCACGACATATCAATAGCGCGAATCACATTAAGGAGAAT
GAAACGGTCTGTTCGGAGGCCAAGTTGCAGGAGTTGAACCTGAAAAAAGG
CGATCGAAGGGCCAAAATCAGTAAAGCAGCGAAGGCAAACGCCGTTGCGC
TCAAAACGGCGAGCGCTGTCCAGCTTTTCTTTTCCGGGAGGACCCCGGAA
GCATCCAACGCGGGTGGTGCTGCCGGGCGTACTAGGCAAGTACCCGGTGA
GGTATCCTGTTACGACGCAAGCAGCAGCAAGCACAAGAGGACAGAGAAGG
AGTTTACAGCTACAATGGAGCCCCCTCGAAAGAAGAAACGTCAGAGCGGC
AAGTGTAAGGGATGCCTTACAACCGGTGTATCGGACGCGTTCCTAGCGGC
AATGAATCATAAAAGGAAGCTGAGGAAAAATGCCGCGATGTGCAAGAAAC
CTGGAAGCGTGAGCAGGCCGCTGCATCAACGAATGCGACTGTTGTCGTTG
CGGCGGCTATTGCCAAAACGAGAAGGTCTCGAGCGGCGGTAG
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