mRNA_A-nodosum_M_contig1210.11.2 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1210.11.2
Unique NamemRNA_A-nodosum_M_contig1210.11.2
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig1210.11.2 vs. uniprot
Match: D7G122_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G122_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 4.400e-30
Identity = 70/145 (48.28%), Postives = 98/145 (67.59%), Query Frame = 1 
Query: 1168 LVEAAERTTVTVYANGFDERTSG-SGCSPSGCVAANARDGV--PSTRWSCKEDLIDGENCEITFEFDDAQDIALMRVAFYKGDERTRKLKVIVNNSNLLTIESSGTTDEFEVFALNTDETKDLTLEVLDLAGGEWFSLEEVEFMV 1593
            LV+A +RTTV  +AN +D+RTS   GC P GC A+  RD      +RWSC E L D + C+IT++F++ QDI  +++ FYKGDER R LK+  ++    TI SSGT+ ++E + +NTDETK L++E L+L   EW S+ EV FMV
Sbjct:    4 LVDARKRTTVNKWANAYDDRTSEYGGCDPDGCKASLTRDQSWQDESRWSCSEKLEDAQ-CKITYKFEEPQDIVRIKIKFYKGDERVRTLKLKGSDGFEKTITSSGTSSKYETWDINTDETKWLSMEALNLDDDEWISITEVRFMV 147
[Close]
BLAST of mRNA_A-nodosum_M_contig1210.11.2 vs. uniprot
Match: A0A6H5J8U9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8U9_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 3.130e-19
Identity = 70/169 (41.42%), Postives = 93/169 (55.03%), Query Frame = 1 
Query: 1138 TLQPAAPTET-------LVEAAERTTVTVYANGFDERTSGS----GCSPSGCVAANARDGV----PSTRWSCKEDLI-DGENCEITFEFDDAQDIALMRVAFYKGDERTRKLKVIVNNSNLLTIES-SGTTDEFEVFALNTDETKDLTLEVLDLAGGEWFSLEEVEFMV 1593
            T QP +P E         VEA  +TTV V A  +D+R   S    GC   GC+   A DGV      +RWSC E+++ DG  CEI+F FD  QDI  ++VAF+KGDERTR LKV +N   +   ES  G+T  F  F +  +    +T+E + +   +W SL EV FMV
Sbjct:  234 TAQPVSPPEEEDDNNAEFVEAGSKTTVGVTATAYDDRPGESAGDVGCGEMGCLPDLAHDGVGEEDTESRWSCAEEIVPDGGQCEISFTFDSPQDITDVQVAFWKGDERTRTLKVKINGDKIGEYESYPGST--FNSFGIQENGVHTVTMESVGIDRDDWISLLEVRFMV 400
[Close]
BLAST of mRNA_A-nodosum_M_contig1210.11.2 vs. uniprot
Match: A0A6H5JFX1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JFX1_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.260e-16
Identity = 65/152 (42.76%), Postives = 82/152 (53.95%), Query Frame = 1 
Query: 1168 LVEAAERTTVTVYANGFDER---TSGS-GCSPSGCVAANARDGVPS---TRWSCKEDLI-DGENCEITFEFDDAQDIALMRVAFYKGDERTRKLKVIVNNSNLLTIES--SGTTDEFEVFALNTDETKDLTLEVLDLAGGEWFSLEEVEFMV 1593
            LV AA  T +   A GFDER    SG  GC   GC+   A DG+     +RWSC ED++ DG  CEI F F   Q++  ++V F+KG+ERTR LKV +N       +S     T  F+V A +      +TLE L L   EW SL EV FMV
Sbjct:  191 LVNAATITAIAASATGFDERPGQASGDHGCGKYGCLPVLATDGITDDVESRWSCAEDIVPDGGQCEIEFTFSHPQNLKQLQVDFWKGEERTRTLKVKINGEKFGEFDSHPGSVTSYFDVIAYDVHT---VTLESLGLDTDEWISLLEVIFMV 339
[Close]
BLAST of mRNA_A-nodosum_M_contig1210.11.2 vs. uniprot
Match: D8LCQ5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCQ5_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 2.030e-16
Identity = 52/119 (43.70%), Postives = 70/119 (58.82%), Query Frame = 1 
Query: 1255 GCVAANARDGV----PSTRWSCKEDLI-DGENCEITFEFDDAQDIALMRVAFYKGDERTRKLKVIVNNSNLLTIES-SGTTDEFEVFALNTDETKDLTLEVLDLAGGEWFSLEEVEFMV 1593
            GC+   A DGV      +RWSC E+++ DG  CEITF FD  QDI  ++VAF+KGDERTR LKV +N   +   ES  G+T  F  F +  +    + +E + +   +W SL EV FMV
Sbjct:    2 GCLPDLAHDGVGEEDTESRWSCAEEIVPDGGQCEITFTFDSPQDITDVQVAFWKGDERTRTLKVKINGDKIGEYESYPGST--FNSFGIQENGVHTVAMESVGIDADDWISLLEVRFMV 118
[Close]
BLAST of mRNA_A-nodosum_M_contig1210.11.2 vs. uniprot
Match: A0A6H5L4E8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4E8_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 2.470e-14
Identity = 57/148 (38.51%), Postives = 81/148 (54.73%), Query Frame = 1 
Query: 1168 LVEAAERTTVTVYANGFDERTSG-SGCSPSGCVAANARDGV--PSTRWSCKEDLIDGENCEITFEFDDAQDIALMRVAFYKGDERTRKLKVIVNNSNLLTIESSGTTDEFEVFALNTDETKDLTLEVLDLAGGEWFSLEEVEFMVHHG 1602
            LV+A +RT V  +AN +D+RTS   GC P GC A+  RD      +RWSC E L D + C IT+ F++ QDI                +++ +N      I SSGT+  +E + +NTDETK L++E L+L   EW S+ EV    + G
Sbjct:  608 LVDARKRTAVKKWANAYDDRTSEYGGCDPDGCKASFTRDRSWKDESRWSCSEKLEDAQ-CNITYNFEEPQDI----------------VRIKINGEFKKIITSSGTSSTYETWDINTDETKWLSMEALNLDDDEWISITEVRIYNNSG 738
[Close]
BLAST of mRNA_A-nodosum_M_contig1210.11.2 vs. uniprot
Match: A0A835YSD2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSD2_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 5.020e-14
Identity = 66/178 (37.08%), Postives = 88/178 (49.44%), Query Frame = 1 
Query:   73 VATMRDFYGADLVHLITGVNIIGSNSVRICGSADLLTDSDIAGGIADQNAFGVTAA-GDCFMTNTLGHELGHNFGCWHDIGTLEAQEFFEQV-SYYHGFRNCSGNFPFGTIMAYRCPFFSVNPYEYRNVYSTPEVEFMGTPVGTVDREDCARRIQDTMSILAGYRTLSVTPAPTTSAP 600
            VA  R+ YGADL+ ++T            CG   L+TD            +G +A   DCFM  +  HE+GHN GC HDIGT  A      +  Y  G+R CS    F T+MAY C   S +   Y   +S+P V +MG P GT D ED  R ++D+   ++ +R    TP   TSAP
Sbjct:  419 VAAARNTYGADLIQMMT-------EDTAYCGLGWLMTDKS-----PSFEKYGNSAVFNDCFMNLSHIHEIGHNMGCHHDIGTDGANAAAGSLWPYSFGYRYCSAP-NFRTVMAYACTSGSASRMPY---FSSPNVYYMGYPTGT-DIEDNVRTLKDSKLTVSNFRLNGTTP---TSAP 576
[Close]
BLAST of mRNA_A-nodosum_M_contig1210.11.2 vs. uniprot
Match: A0A6H5KL74_9PHAE (F5/8 type C domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KL74_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 5.450e-14
Identity = 60/151 (39.74%), Postives = 83/151 (54.97%), Query Frame = 1 
Query: 1168 LVEAAERTTVTVYANGFDERTSGS--GCSPSGCVAANARDGVPST---RWSCKEDLID-GENCEITFEFDDAQDIALMRVAFYKGDERTRKLKVIVNNSNLLTIESSGTTDEFEVFALNTDETKDLTLEVLDLAGGEWFSLEEVEFMVHHG 1602
            +VEA+   TVTV A  +D   + S  GCSP+GC+  N RDG  ++   RWSCK  L D G  C IT+       +  + +A YKGDERTR L++ ++N       SSGTT +FE   ++T       + VL+    EW S+ EVE +V  G
Sbjct:   25 VVEASTLATVTVAAPLYDTTVTASDGGCSPTGCIGDNTRDGDATSVESRWSCKPALGDAGSVCRITYGLGIQYQLTGLNIAMYKGDERTRTLEINIDNLPYTVWTSSGTTTDFETIEVDTMGRWIDIVGVLE--DSEWLSIMEVEILVDDG 173
[Close]
BLAST of mRNA_A-nodosum_M_contig1210.11.2 vs. uniprot
Match: A0A835YS29_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS29_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 2.490e-13
Identity = 68/191 (35.60%), Postives = 92/191 (48.17%), Query Frame = 1 
Query:   37 TEIRRNLVANAEVATMRDFYGADLVHLITGVNIIGSNSVRICGSADLLTDSDIAGGIADQNAFGVTAA-GDCFMTNTL--GHELGHNFGCWHDIGTLEAQEFFEQV-SYYHGFRNCSGNFPFGTIMAYRCPFFSVNPYEYRNVYSTPEVEFMGTPVGTVDREDCARRIQDTMSILAGYRTLSVTPAPTTSA 597
            T++   +V  A  A  R+ YGADLV ++T            CG   L+T  D     A    +G +A   DCF    L   HE+GHN GC HD+GT  A      +  Y  G+R CS    F T+MAY C   S +   Y   YS+P V FMG P GT+  ED  R ++D+   ++ +R    TP P  +A
Sbjct:  365 TDLANGVVPGAAAA--RNTYGADLVQMMT-------EDPNYCGIGWLMTGKD-----AWFEKYGHSAVLNDCFTPTGLTHAHEIGHNMGCHHDMGTDGANGAAGSLWPYSFGYRYCSAP-NFRTVMAYSCTSGSASRAPY---YSSPNVYFMGYPTGTI-YEDNVRTLKDSKLTVSNFRLNGTTPTPAPTA 536
[Close]
BLAST of mRNA_A-nodosum_M_contig1210.11.2 vs. uniprot
Match: A0A6H5JU45_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU45_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 1.850e-11
Identity = 36/63 (57.14%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:  916 TCSNGIVGVERYGQCCVLGCGTCGGIGCSQRASDVGLKSADCCVTRIRESGVYCDASGAAPCI 1104
            TC NG+ GV     CC LGCGTCGG GCS RA   GL   DCC + I  +G+ C  SGAAPCI
Sbjct:   24 TCDNGLAGVSTGVYCCTLGCGTCGGSGCSSRAE--GLNGDDCCTSNIASNGILCADSGAAPCI 84
[Close]
BLAST of mRNA_A-nodosum_M_contig1210.11.2 vs. uniprot
Match: A0A6H5JW06_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW06_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 2.430e-11
Identity = 40/79 (50.63%), Postives = 47/79 (59.49%), Query Frame = 1 
Query:  916 TCSNGIVGVERYGQCCVLGCGTCGGIGCSQRASDVGLKSADCCVTRIRESGVYCDASGAAPCILN-EGPAPEPSPTLQP 1149
            TC NG+ GV     CC LGCGTCGG GCS RA   GL   DCC   I ++G+ C  SGAAPCI + E   P  + T+ P
Sbjct:    9 TCDNGLAGVSNGDYCCTLGCGTCGGPGCSTRAE--GLDGNDCCTANIAQNGILCAESGAAPCIGDVEDDVPTETETMDP 85
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1210.11.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G122_ECTSI4.400e-3048.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J8U9_9PHAE3.130e-1941.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFX1_9PHAE1.260e-1642.76Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LCQ5_ECTSI2.030e-1643.70Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5L4E8_9PHAE2.470e-1438.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YSD2_9STRA5.020e-1437.08Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5KL74_9PHAE5.450e-1439.74F5/8 type C domain-containing protein n=3 Tax=Ecto... [more]
A0A835YS29_9STRA2.490e-1335.60Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JU45_9PHAE1.850e-1157.14WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JW06_9PHAE2.430e-1150.63WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1210contigA-nodosum_M_contig1210:217777..222681 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FL48
PFAMsLRR_8
Model size2416
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons7
Evalue5.63e-18
EggNOG OGsCOG4886@1|root,KOG0619@2759|Eukaryota
Descriptionregulation of response to stimulus
Cds size1533
COG categoryU
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1210.11.2prot_A-nodosum_M_contig1210.11.2Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1210 218579..222600 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866639.5264814-UTR-A-nodosum_M_contig1210:217776..2185781680866639.5264814-UTR-A-nodosum_M_contig1210:217776..218578Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1210 217777..218578 -
1680866639.6312218-UTR-A-nodosum_M_contig1210:222600..2226811680866639.6312218-UTR-A-nodosum_M_contig1210:222600..222681Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1210 222601..222681 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866639.5425313-CDS-A-nodosum_M_contig1210:218578..2186141680866639.5425313-CDS-A-nodosum_M_contig1210:218578..218614Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1210 218579..218614 -
1680866639.5534785-CDS-A-nodosum_M_contig1210:219518..2199821680866639.5534785-CDS-A-nodosum_M_contig1210:219518..219982Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1210 219519..219982 -
1680866639.566087-CDS-A-nodosum_M_contig1210:220134..2207081680866639.566087-CDS-A-nodosum_M_contig1210:220134..220708Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1210 220135..220708 -
1680866639.5834818-CDS-A-nodosum_M_contig1210:221189..2213431680866639.5834818-CDS-A-nodosum_M_contig1210:221189..221343Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1210 221190..221343 -
1680866639.602352-CDS-A-nodosum_M_contig1210:221721..2218141680866639.602352-CDS-A-nodosum_M_contig1210:221721..221814Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1210 221722..221814 -
1680866639.611096-CDS-A-nodosum_M_contig1210:222056..2221791680866639.611096-CDS-A-nodosum_M_contig1210:222056..222179Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1210 222057..222179 -
1680866639.6209378-CDS-A-nodosum_M_contig1210:222511..2226001680866639.6209378-CDS-A-nodosum_M_contig1210:222511..222600Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1210 222512..222600 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1210.11.2

>prot_A-nodosum_M_contig1210.11.2 ID=prot_A-nodosum_M_contig1210.11.2|Name=mRNA_A-nodosum_M_contig1210.11.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=511bp
MRDFYGADLVHLITGVNIIGSNSVRICGSADLLTDSDIAGGIADQNAFGV
TAAGDCFMTNTLGHELGHNFGCWHDIGTLEAQEFFEQVSYYHGFRNCSGN
FPFGTIMAYRCPFFSVNPYEYRNVYSTPEVEFMGTPVGTVDREDCARRIQ
DTMSILAGYRTLSVTPAPTTSAPMTPSPSSVAPTEPASLIPMPTTTAPST
VAPSSSLPTISAPTISITSAPTTPALTPTPTTPEPSALPLDTRAPTTLIH
ITPTPRPPPPSTSPPAIPSFMTPSPVTSTCSNGIVGVERYGQCCVLGCGT
CGGIGCSQRASDVGLKSADCCVTRIRESGVYCDASGAAPCILNEGPAPEP
SPTLQPAAPTETLVEAAERTTVTVYANGFDERTSGSGCSPSGCVAANARD
GVPSTRWSCKEDLIDGENCEITFEFDDAQDIALMRVAFYKGDERTRKLKV
IVNNSNLLTIESSGTTDEFEVFALNTDETKDLTLEVLDLAGGEWFSLEEV
EFMVHHGYLT*
back to top

mRNA from alignment at A-nodosum_M_contig1210:217777..222681-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1210.11.2 ID=mRNA_A-nodosum_M_contig1210.11.2|Name=mRNA_A-nodosum_M_contig1210.11.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4905bp|location=Sequence derived from alignment at A-nodosum_M_contig1210:217777..222681- (Ascophyllum nodosum dioecious)
CCGCAGCTGCCGTACGTTGAGACATCGACCATCGCAACAGAAATAAGGAG
AAACTTAGTCGCAAACGCTGAGGTCGCGACGATGCGCGATTTTTACGGAG
CTGACTTGGTTCACTTGATCACAGGCGTAAACATCATCGGGAGTAACAGT
GTTCGAATCTGTGGAAGTGCGTGAGTGAAGTCACGTAAGACGGGCAACGA
TGTCTTTTGTGAGAATAAACTCTTTTGTTTTATGTTCGGTTTTGAGTAAG
CCACACGTATACCCCTATCCAAGCGGAGTGAAGTTGTGAAGCTTTTCGTT
TTCAACGAGTCGACCATTGCGCTATTAGCAGGATTTTCGCCTAGCATCTG
GTGGCTGGGAACAAGCGACTCCTTGAAAGCATAATATGTTTACAGTCCCC
TCTACCTGTCTGTTGCCGCCGGTTTCATTACTATCTTCTGAATCTGCCAC
TTGTTTGTCGGAAAATGTACGTTCGCCCACTTTTCTATGATCGCCTTATC
AGCGATCTCCTTACGGACAGTGACATAGCGGGCGGAATTGCCGATCAAAA
CGCGTTTGGGGTAACGGCAGCCGGCGATTGTTTTATGACCAACACTCTCG
GCCACGAGTTGGGCCACAATTTCGGGTCAGTAAATGTCAAGTTGGTGATT
TTCATCCGTTTTGAGCAGGAACACACCTCCTCCGAGTCAACCGTTGCGGA
GGTTATCAGTCAAGAAAAATCGTGTACATTGCTGTAGGTACAGATTTTGT
TTTGTCGCAAACACCTACTACGTAAGCTTGACAGGTTAACGTCAAAGTTA
AAGGTGGATGCGTAGTGACAATCTCACCAAAGTGACGGAGCCTCAATCTC
CTGTGCTGTTTTGGCAGCTGCTGGCACGACATAGGGACCCTTGAAGCCCA
GGAATTTTTTGAGCAAGTGAGCTACTATCACGGTTTCCGGAACTGCTCAG
GGAACTTCCCGTGAGTATTTAGCACTTCCTCCGCGTCTGACGGCATGGGT
GCCAAAAAGGAGGGTCGACTCAGCTGATGTCGCATCAATGTTGCTGTTTG
GCGTGAAGTAACTTCATGGGAAAAAGTAAGCCATAGCCCATTTGTTTCTT
GCGGGCACCCTCGACACGATTGATAACCTCACTGGCTGCTTCCGCAGTCA
ACCCAACGCCTTGCATTTCCCCCAGCCCGAAGATGACTTGTGCCAGCACT
TTGGTTTTCGTTGGGGGTATACGCTTATAGAGGCGATCAGACAGCACAAA
TACGAATATAGATGACTAACCTTGGTTGCTTACCTTGAAGGGTCAAGCGT
ATGCCTTCACACGCGCAACTGTTTCTCCCACGCACCAGGTTTGGAACAAT
CATGGCCTACAGATGCCCCTTCTTCTCCGTAAACCCATATGAGTACCGCA
ATGTATACTCAACCCCAGAAGTAGAATTCATGGGTACCCCGGTCGGTACC
GTTGACAGAGAAGATTGTGCGAGACGCATCCAAGACACCATGGTGAGTTA
CAATTTTTCGGCAGAAGTAAAACGTACCACCCTAGCAAGGCTTAGGATTT
GCAGGGCTGTGTACATGCGACGTAGGGTGTATCGGCACAGTCTCTGCTCT
GGATGTTGGGGAAGAGGTCGCACTCGTTGTGTCATCACCGCTTCTCTATG
TACCTCGCACAATAAAACTCGATATGTCAGCCATGCCTCGGCCTATATCT
AGCCCTATGCCAGGGACAGACACCAAGTTGTGGATATTTCAAATCTATAA
GGCGGCATCACTCACAAGTAGAGCTAGGTCCCACACTTCTTTGCTGTAGA
ATCATTTTGCTCGGCGGTAAAAGCTCATGCACTTGCTGTGTTGCCGGTCT
GAAAATGCCAAGTGCGCACTGTTCAGTGGATGCAAAAAGGGTAAGAGTCA
GCTGCGAAGACTAATATTGGGAGAAAAATGACTTAATGTCAGCCATATCC
ATGCTGCATTTGTAATCGCGCAGAGCATATTGGCGGGTTACCGGACACTT
TCTGTAACTCCTGCTCCTACGACCTCAGCCCCCATGACCCCTTCTCCCTC
CTCTGTAGCTCCTACAGAACCGGCTTCTCTGATCCCAATGCCCACAACCA
CAGCTCCTTCGACTGTGGCTCCTTCGAGCTCACTGCCCACTATCTCAGCT
CCAACGATATCAATTACTTCAGCGCCTACGACTCCGGCTCTTACCCCGAC
TCCTACCACGCCCGAACCTAGTGCGTTGCCTCTTGACACGCGGGCCCCGA
CCACGTTAATTCATATTACACCAACACCTAGGCCCCCTCCTCCGAGCACC
TCGCCCCCTGCCATCCCCTCATTTATGACCCCGTCCCCGGTCACATCGAC
ATGCAGCAACGGCATTGTTGGTGTTGAAAGATACGGCCAGTGTTGTGTTC
TCGGATGTGGAACTTGCGGTGGTATAGGATGCAGTCAGAGAGCTAGTGAC
GTGGGCTTGAAGTCGGCGGACTGCTGCGTGACCAGAATTAGAGAATCTGG
TGTATACTGCGACGCGTCGGGGGCTGCGCCATGCATCTTGAACGAAGGTT
AGTCATCTATATTCGGTCGATCTCACGTAGCTGGCCGAGGGCAAGACTGG
GGTCCTAAAGCTGTAAGAGGTATGCCATAATATTTTGAAGCAGAGTCGAA
AGTGCCGTTAATATATAAATTATCCACATGTGGTGTGCGTTTCCACCAGG
TCCCGCACCAGAGCCTTCTCCCACTCTTCAACCCGCTGCTCCAACTGAGA
CGCTAGTGGAAGCCGCAGAGAGGACGACGGTTACTGTGTACGCAAACGGC
TTTGACGAGAGGACCTCGGGATCCGGCTGTTCACCCTCCGGCTGTGTCGC
GGCCAACGCACGTGACGGTGTCCCTTCCACGCGATGGTCATGCAAAGAGG
ACCTGATAGACGGCGAAAACTGCGAAATCACTTTTGAATTCGACGACGCC
CAGGACATCGCCCTCATGCGCGTTGCATTCTACAAGGGTGACGAGAGGAC
CCGTAAACTAAAGGTCATAGTTAACAATTCTAACTTGCTGACAATTGAAT
CTAGCGGCACAACGGATGAATTTGAGGTGTTTGCCCTAAATACCGACGAA
ACCAAGGACCTGACCCTCGAGGTTCTTGACCTTGCTGGCGGAGAATGGTT
CAGCCTCGAAGAGGTGAGGTCTTAACGAAACATCTATAAATAGCTGTACG
CCAAGGATTAGATGACAGAGAGGAATCGCGCTATCGTTACATCAACCCAA
CTTCAGGCATATTTTGAGCAACTATGACTTACAGCACATAGTCTATCGGT
ACTGTATTCCGAATATCTATCCTATCAACACGCCCAACACACCAACAGTG
GGTGTGGGAAAAGAGAGGTGCAAATTAATTGGTCCATGGTAATGCAAAGG
CAGCGCACCCGTTACTTGTACTACCTTGAGGGCTACTGGCCCTGTGCCGG
CGGACTATCGGCAGTGAACACCATCGGTACGCAGTTGCGTAACCCGATAA
ACTCGGGACGGACCCGATGGCGTATGGCGGTTTAGATTGGTAAAATAAAC
GTCGCCGCGGAAATCGGAAGGAATCCCGCGAATAAACACCAGATTCAGCC
TGAGTATGGAGAATGAGCAGGCTGACGCGGGACGGGACGGCCGAACCCAT
TTCGTGAGACCAGGTTCTCATGTGCAAACGGGGACAGGGAAATGTTCATT
TTCCCTGTTCAGCTGATTGCGAGCAGGATTGGCAACCTTACCCGGTTGAT
CCAAACTCTGGTATATGTGATAACCATACATACATACATACATACATACA
CGTTTGATCAGAGGTTTTCGTAACAAGTATCATTGATCCCCCCTTGGGAG
GATCAATGCGAGTGGCATAGAATGACTTGGATGACAGGGCCGGATTGCGC
GGTTATGTGCAATTTAATAAATATACATACATACATACGTACGTACGTAC
ATACAAACACATACATATATACACTGTTCACTACGATATCCGCGTACTGT
ATATCACCACATTCTTTCGTGTGAAATCCTGCCTAAGTCCCACGTCGCGT
CTCGCCGCGCGCATTAGGTTGAGTTCATGGTTCATCATGGTTATCTAACA
TGATATTTTGGCAAGGATCGGATCTACTCAATTTTTCTCCCCGCTTCAGA
CGAAGAGCGGATTGGAGAAAACGCGATGGCATGAATTTACATTTATCTCC
TTCCCAGAAAATAACCAATTGAACAGAACACGGGATTGCCACGGGCCTGG
TGCACCATCATTCTGTGCCAACGTATTCCCTTCGTACAGAACAGGTTCCT
ACCGAGCGAGGGAGATAGTAACTACATTTTGACTCTCCGCAATCGATTTT
TATGACCGCGGTCAAGTCACCACCGTCGGTTTTGTATGTGTCCTTGAATG
GCGGTGATGTGCACCTTGATGGTTCTGGGCGTTTTTCGAGGGTGGCGGGG
TGATAAAAGCCTTACTAGGTAAGTGAGTACTTTGGCGTTCTTCGTCTTAC
TTGCAGCAGTTAGACCTCTTCGCGCATTGCAAATGACGCTTTGCGTCGTA
GTGCGTGAGTAGGTGTTTCGCGATGCGTCCATTTTTGTTTCATTTGTGAG
TCCTCCCCTCCTTGCAAGGCAACCCCCACCGAATACGTAATACATCATAG
CCGCAGTGGCTTATTCCTGCAAAAAATATCAATCGACCGAGGTTGAGACC
AAGAGGTGTCGGTGATTGCATTTGATTGCCCCCATGTCTGCGAGGGATCA
AAATGAGAGGGGGGTGATCCACACAAGGCGATATCCACTGTGTGAGACAG
AGACTTAGGCAATCGGCAGAAAATCGGAGAGAATGGTTACGGAGTTTGCA
CATACGCTCTTTGGATAGAAGGAAGTAGAATGTACATCGAATTCAAAATA
AGTGG
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig1210:217777..222681-

>mRNA_A-nodosum_M_contig1210.11.2 ID=mRNA_A-nodosum_M_contig1210.11.2|Name=mRNA_A-nodosum_M_contig1210.11.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=1533bp|location=Sequence derived from alignment at A-nodosum_M_contig1210:217777..222681- (Ascophyllum nodosum dioecious)
ATGCGCGATTTTTACGGAGCTGACTTGGTTCACTTGATCACAGGCGTAAA
CATCATCGGGAGTAACAGTGTTCGAATCTGTGGAAGTGCCGATCTCCTTA
CGGACAGTGACATAGCGGGCGGAATTGCCGATCAAAACGCGTTTGGGGTA
ACGGCAGCCGGCGATTGTTTTATGACCAACACTCTCGGCCACGAGTTGGG
CCACAATTTCGGCTGCTGGCACGACATAGGGACCCTTGAAGCCCAGGAAT
TTTTTGAGCAAGTGAGCTACTATCACGGTTTCCGGAACTGCTCAGGGAAC
TTCCCGTTTGGAACAATCATGGCCTACAGATGCCCCTTCTTCTCCGTAAA
CCCATATGAGTACCGCAATGTATACTCAACCCCAGAAGTAGAATTCATGG
GTACCCCGGTCGGTACCGTTGACAGAGAAGATTGTGCGAGACGCATCCAA
GACACCATGAGCATATTGGCGGGTTACCGGACACTTTCTGTAACTCCTGC
TCCTACGACCTCAGCCCCCATGACCCCTTCTCCCTCCTCTGTAGCTCCTA
CAGAACCGGCTTCTCTGATCCCAATGCCCACAACCACAGCTCCTTCGACT
GTGGCTCCTTCGAGCTCACTGCCCACTATCTCAGCTCCAACGATATCAAT
TACTTCAGCGCCTACGACTCCGGCTCTTACCCCGACTCCTACCACGCCCG
AACCTAGTGCGTTGCCTCTTGACACGCGGGCCCCGACCACGTTAATTCAT
ATTACACCAACACCTAGGCCCCCTCCTCCGAGCACCTCGCCCCCTGCCAT
CCCCTCATTTATGACCCCGTCCCCGGTCACATCGACATGCAGCAACGGCA
TTGTTGGTGTTGAAAGATACGGCCAGTGTTGTGTTCTCGGATGTGGAACT
TGCGGTGGTATAGGATGCAGTCAGAGAGCTAGTGACGTGGGCTTGAAGTC
GGCGGACTGCTGCGTGACCAGAATTAGAGAATCTGGTGTATACTGCGACG
CGTCGGGGGCTGCGCCATGCATCTTGAACGAAGGTCCCGCACCAGAGCCT
TCTCCCACTCTTCAACCCGCTGCTCCAACTGAGACGCTAGTGGAAGCCGC
AGAGAGGACGACGGTTACTGTGTACGCAAACGGCTTTGACGAGAGGACCT
CGGGATCCGGCTGTTCACCCTCCGGCTGTGTCGCGGCCAACGCACGTGAC
GGTGTCCCTTCCACGCGATGGTCATGCAAAGAGGACCTGATAGACGGCGA
AAACTGCGAAATCACTTTTGAATTCGACGACGCCCAGGACATCGCCCTCA
TGCGCGTTGCATTCTACAAGGGTGACGAGAGGACCCGTAAACTAAAGGTC
ATAGTTAACAATTCTAACTTGCTGACAATTGAATCTAGCGGCACAACGGA
TGAATTTGAGGTGTTTGCCCTAAATACCGACGAAACCAAGGACCTGACCC
TCGAGGTTCTTGACCTTGCTGGCGGAGAATGGTTCAGCCTCGAAGAGGTT
GAGTTCATGGTTCATCATGGTTATCTAACATGA
back to top