mRNA_A-nodosum_M_contig121.64.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig121.64.1
Unique NamemRNA_A-nodosum_M_contig121.64.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig121.64.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig121contigA-nodosum_M_contig121:779379..786198 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1890
Hectar predicted targeting categoryother localisation
Exons5
Cds size1707
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig121.64.1prot_A-nodosum_M_contig121.64.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig121 779379..786016 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866638.651469-CDS-A-nodosum_M_contig121:779378..7798791680866638.651469-CDS-A-nodosum_M_contig121:779378..779879Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig121 779379..779879 -
1680866638.6605718-CDS-A-nodosum_M_contig121:780251..7812211680866638.6605718-CDS-A-nodosum_M_contig121:780251..781221Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig121 780252..781221 -
1680866638.6719685-CDS-A-nodosum_M_contig121:783365..7834481680866638.6719685-CDS-A-nodosum_M_contig121:783365..783448Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig121 783366..783448 -
1680866638.6851993-CDS-A-nodosum_M_contig121:785342..7854471680866638.6851993-CDS-A-nodosum_M_contig121:785342..785447Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig121 785343..785447 -
1680866638.6988163-CDS-A-nodosum_M_contig121:785968..7860161680866638.6988163-CDS-A-nodosum_M_contig121:785968..786016Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig121 785969..786016 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866638.7107615-UTR-A-nodosum_M_contig121:786016..7861981680866638.7107615-UTR-A-nodosum_M_contig121:786016..786198Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig121 786017..786198 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig121.64.1

>prot_A-nodosum_M_contig121.64.1 ID=prot_A-nodosum_M_contig121.64.1|Name=mRNA_A-nodosum_M_contig121.64.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=569bp
MEIVDENSPRAAGLSSASGKAKPRVSSGFPLAERSRDGQGIIGPAPPLRQ
KGSSGGIDGDREREREREGHRRKSKSSRRLTADSAALADVLTNLDIDQDD
GEAPVPSFSKKSKNHGQESRRLTADPLSINCLLNDSDSSTGIGIDGSPGG
EGRDAALASSSMPMDLGSDDDNDDTGIDAERGSDASNRTDGVDVGSEGAI
GDRSMDPSLDRFRSFFSDSSMNRSLEDRAASASADKTEDFSSLFGFTEME
SPPPIIGEMGGDDRHVAGVRPRARHHSNQKPALEDIAPVPAAPPLLPSRP
PGASARISGGGMRDSAGSKTRGPVSVKPQSPARRPRRSVASLDLSSREPS
CRDPQEGGSLEGVPLSAAETAVGYGSRSGAGLDNQERVRGGAVEPTAMGK
ARGAAAKGEEDAMAEPSKHKSSRLSSRSLTADSFSVQNLLGSPLADAEDD
DLEGVEQNAGGRRAARNTKNDPPPLDFNMEVGVFVGEGEQGTAGDDHGGQ
TADLNALYEMMNDTASDPDTVLTADQRVTHSSQAGGHRSPPRGSRFESVS
FESAYGNLLPSSAGPSIRE
back to top

mRNA from alignment at A-nodosum_M_contig121:779379..786198-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig121.64.1 ID=mRNA_A-nodosum_M_contig121.64.1|Name=mRNA_A-nodosum_M_contig121.64.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=6820bp|location=Sequence derived from alignment at A-nodosum_M_contig121:779379..786198- (Ascophyllum nodosum dioecious)
TGTGCTCGTAGATCCCCTCAAGTCCGGTTAGGAAGTCGCGGCGTTCGAAG GGACGGAATGGGAGGCATGGCACTACCTTGAAAAGGTGACCTAGATCTGT TCGACCTCGGTGCCTTGGGTTGGCCACGCCTGCCAGGCGCAAGCATCGTT GTCGTGAGAGCCTGTGGCGCGTGGAGGGAGATATGGAAATCGTTGACGAA AACTCGCCCCGTGCAGCGGGCTTGTCGTCGGTGAGTCCACGAATTTCATG TCTGTTTAAAGAAAAATCTGAATGCACCTAGACCTTCTGTTGTGGCAACA TGATCGGAGGCGATCTGGCGTTGGATCTCATGTTAGAGCACTGCCCGATC ACTGCTCTTAAGCTTAGTTACAAATTATATTTGATTAAAGCAACCTTTAA TACAGACAGTTTAGTAGATCTACTGCTGTCGTTTGGCCCTTCACGTAAGC CAAGATACATTCGCAAGGCATTTGCTCAACTTGCGATCGCAGACTGCCTC TACCGCTCCATTCCCTGGAGACTGCCAGCATCCTCATGGAAGATGGCTCA AATGTGTTTCTTTGAACGGCTGGGATACTCTACTTTCGCTCACGTTTGTG CGGCCGCTTTCGAGTGCACTCTTGAATAAGGGCAGGTGTACTACAGTTGT AAGAGTAGAAATCTGTCCTGACTTGAAGGTACGTAGATGTACAATCCGAC CTCGGTCAGCAGAGTGAGGGGCGAACATGTCTCGATCCGTTGTCCGAACA GGCAAGCGGAAAAGCCAAGCCCCGCGTGTCTAGTGGCTTCCCGTTGGCGG AGCGATCGCGTGACGGCCAGGGAATTATTGGGCCTGCTCCGCCGTTGCGG CAGAAGGTGAGTTGACCCTCTGTTTGAAATCTGTCTGTACCGCACTCTAA TTACCAGGTAAAAAAACTTGTAGAAATGTTGAGTAGGTTTCGAGTGTTGT TGCCTAAAGTTTCAAGATACCGTCCGCCGGTACTTTCAACATGCCCACTT CATGCCAATAGTGGGTGTGGGAAAGAGAGGCGAATATCAACTGGTCCATG GTGATCTGCCAAGGCAGCACCCGTTCGGAACTACCTTGAGGTTTACTGGC CCTGTGCCGGCGGACTCTCGGCAGTGAACGCCATCGGTACGCAATCGCGT GACCCGATAAACTCGGGACTGACCCGATGGCGTATGGCGGTTTCATAAAT GGACCCCGCCGCGGAACTCGGGAGGAATCCCGTAAGTAAGCACCAGATTC AGCCTGAGTATGGAGATGAGCAGGCTGACGCGGGACGAGACGGCTGAACC CATCTCGCGAGACCAAATTCTCAGGCACGCACGGGGACAGGGGAATATCC ATTTTCCCTGTTCAGCTGACCACGAGCAGGATTGGCAACCTTACCCGGTT GATCCATACTCTGCTATATGTGATGACCATACATACATACATACATACTG TACTATATAGAGACTACAAGTACTTTCAATACTCTGGCGGTTTTTTCGAC TCTAAAATGTGTATGTTGTCACCCCATTTATTCTGGACGTCAGACTTGTG GACGCACCATCCGGGGTCACACAGGAGGAAGGTCACACAGGATTTCTTCA CCTTCCTATCGCGAGAAGGATTGAATCGTCCCTTGCCCTTGTCGACCGTG AAGTTGAATTTTGTGTACCCAAGAATTAATCGTTCTCCACTTGTTGGGCA TGAAAAATTCCAGTTCGTGTGACTGCACCGAGATTCGAACTCACATCCCC ACGTCATAAGGTTTCGAGGTTACCAACTGAACCACCGGGGCGACCGGCTC AAGTTTGAAATTTATAGTACATACAGAGTCTCCACAGATTCAAATCCTGA ATCTAATGAAAAATCCGATTTCTCCCAACAACCTCGATCTTTCCCGTTGA TCTTTCCCGTTTTGCTGAGTTATGGTGACTATACTCTATTACATATATTT GGAGATGTCTCTTTTTCCGAGTTTATCTTTGTACCATTTTCGTTTTCGCT TTGTATGAAGAGTACGTCGTACGTTCTCTTCTTCCGGATGATGTTTTTCT ACCTAGCGACCACGGGCTGGATTTTTGACATCAGCTTATGTGAGAATTCA ACCAATCAATCAAATCAGTATGGTCACACATATAGCCAGAGTATCGATCA ACCGGGTAAGGTTGCCAATCCTGCAGCAGATAATGAATCAACCGGGTAAG GTTGCCAATCCTGCTTCGTGATCAGCTGAACAGGGAAAATGAATATTTCC CCCTCCCCGTTCACGACTGAGAATTTGATCTCGCGAGACGGGTTCGGCCG TCCCGTCCCGCGTCAGCCTCGTCATTCTCCATACTCAGGCTGAATCTGGT GCTGACTTACGGGATTCCCCCCGATTTCCGCGGCGGCGTCCATTTGTTTA TTTAAACCGCCATACGCCATCGGGTCAGTCCCGAGTTTATCGGGTCACGC AATTCCGTACCGATGGTGTTCACTGCCGAGATTCCGCCGGCATAGGGCTA GCAGTCCTCAAGGTAGTTCCAGTAACGGGTGCTGCCTTTTCAGGTATCAC CATAGACTAATTCATGTGCGCCTCTCTTTTCCCATGCCCACTATTGGTAT GAAGTGGTTATAGCATGTACCTGTTATCAATACCTACTGCACCACAGACG AGACACGAAATGAGTCAAAACACATCAGCCAATAAGTTACGACGGACACG CCTTCCCAACCGTTACAAATGTGTCTCAATGACCTCGATCGTGTTCGCAG GGCTCGTCGGGAGGGATCGATGGGGATAGGGAGAGAGAGAGAGAGAGAGA AGGACACCGTCGGAAGAGCAAGAGCTCGCGAAGGTGTGCTACACGAGAAT CAACTCCATGGGTAGTCTATAGCTCTAAATATTGATATAACTCGTATTAA TTGTATGTATGGTTATTACATGTAAGCAAGAGTTAAGGATCAATCAGCCA ATCCTGCTCGTGGTCAGCTGAACAGGGAAAATGAACTCATATAGTATTGT CTACAGTAATTTTTTAAAGAAAAATCTTTTTAAAGAAAAATCAGAATGCA CCTAGACCTTCTGAGCATCCCCCAGTCAGGGGGAAAAAATGTCAAAACGT TTAGGTGGGATCAATAGCTGAAAATACAAAACCTCTTCATGGCATTTAAA CGGGTTCCCCGATGGTAATAACATTGGGTCAACAGTATAATGTCGGGGAG AAACCCACCGTCATACTGTACACTTACATTAATCGCCATGCAGGGACACC AACAAAAGGGAAGACAAACTAATACATCATCAAACAATAAAGACAAATCC GATACAATGATTGAAACGAGCACAGCAGAGGACCATGATGATGAGAATCT TCATAATCCAAGTACACGACCCCGTCATTCACCTGGAAGTAGACGAAGAG CAGTAGGCGATCACACAAGGCGGTAAGAGGCAAGCGGGAAGAACTGGGTT CCTCGCTCCATACTTGTCAGGGCTACGACACACAGATGCTCCTCATGCAT GGACTTAGCTATGGTCCCGCGTTGACCAGAAACACAAAGGAAAGAGCATC TGTCTGTCAAAGTGACCAAGTAGGCCTCAGGCCACTTCGTGTAACCTCCC ATACGATCCTGACCCGAACTATCTTCAGCTGCATGTCTTTTATTCCGAAC TGTCGTGCCGGATTCATCAGTTCCTTGAATCTTCTCGCAGAACGTACACC AGCTCCATAATCGTTTCTCCAATCTTCTTGCAGAGCGGGACTGTATGATT GTACTTTGGTTTCAGTAAAAATGATCTAATTAGCTAGTCAGGAAAAACTG TTGTCTCAGCCACTTGACCATATTTTTTCAGGATCTAGATAGGGTTTTTA AAATACAGGATAATAAAGAAGAACACATAACCACTATTGTCTACAGTAAT TATATTATGTCTCGATCCGTTGATACAGTACCATTTGTGTTTGTTGTCGA TTTCTGCCGATTGAGCTCTTTAGCAACTTGATCGGTTACCAATACCATCC ACAGTATCACTACAACAGTATTGTCATAGACTATGATGCCTGTGGAAATA AAATACTCTCTACGGACTCCCACTCTGTCCTGAATTCCGAGTCAGGAGGG AGGTATTCAGTAGAGGACATACATTGCGGCCAACTTCCCGCTTTGTCAAA ATACCGCCAAAAACTGCGTACTTGTTTAATATTACAATCCTAGAGGGGCT AGAGGCTCAAAACTGCGACATGCCCGGGGATGGCCTCCGATACATCCCCG GGGTCAAATTTTTGCAACGTTTTCTCGTGAGAGTGGTCAACGTTCAACGC AAGCGAACGTAGTTAGGGGTTCCATATAGTTATCAGGCGGGACGTGCACA TGGCGTTGAGATTCGATGAAAGGCCTCGGTGGTAAAGGTATTCGTTAGAG AGTGGGAAGGTCGGGGTAACAGGGAGAACCCACAAAACTACTCGAAACAA TTTCTTAGACGTATAACCCCAAAATAAGCGACATACTGAGCCGATTCGGG TGCCGCACTTTTTCTAGTCATCTATTTGACCGGAGCTTTAGTTCAGGTGG TCAAAGACGACGTACCTTGATTTGCCCCGGGTGCTACGTCGAGCTACATT TAGGCACTTCAGACTTGAGGCGGATATACTAGTAGTACTATACTAATATA AGGTACTACTAAGTATTATAATACTATTATTCAAGCCGCCGATCCTACTG ACTCGTTCTCAGTGGCCAATTTTCAGGCAAAAGGACGGCTTCGCGCGTCC GTACAGACGGACTTGTGCGGACCTATCTCGCTGGTCCCGTACCCTTAAGT CATCATGCATGCGCATCGATGCACTTTTGACGTTTCGGAAATCGTACGAG CACCCGAGGAGTTCCGGCCCCAGCGTTATTATCAGAGCGTGAGTGTGAAA CGTGTACTCGCGCGCATTTGTGTCGATCGACGCCGCCTTGATTCACCCCT CCCTTCATTCCTTCCCTCCGACCGCAGGTTGACCGCCGACAGCGCCGCCC TCGCCGACGTGCTGACGAACCTGGATATAGATCAAGACGACGGCGAGGCA CCGGTGCCCTCCTTCTCCAAGAAATCCAAGAACCACGGGCAAGAAAGCCG TCGCCTGACGGCGGATCCCTTGTCGATCAACTGCCTCCTCAACGATAGCG ACAGCAGCACCGGCATCGGCATTGACGGCAGCCCCGGAGGGGAAGGGAGG GATGCTGCCTTGGCTTCCAGTTCGATGCCGATGGATTTGGGTTCCGACGA CGACAACGACGACACCGGTATCGACGCGGAGCGCGGTAGTGACGCCTCAA ATCGAACCGACGGGGTGGATGTGGGGAGCGAGGGCGCGATCGGGGACCGT TCTATGGACCCATCTTTGGATCGCTTCCGGAGTTTTTTCTCGGATTCTTC CATGAACCGTTCCTTGGAGGATAGGGCCGCGAGCGCAAGCGCCGACAAAA CGGAGGACTTTTCCTCGCTCTTCGGATTTACGGAGATGGAAAGCCCACCT CCTATCATCGGGGAGATGGGGGGCGATGATCGCCACGTTGCTGGTGTCCG TCCTAGGGCTCGCCACCACAGCAACCAGAAGCCCGCCCTGGAAGACATCG CCCCCGTTCCAGCCGCGCCGCCTCTGCTGCCGTCGCGGCCCCCTGGGGCC TCGGCTAGAATCAGCGGTGGCGGCATGAGAGACAGTGCAGGTAGTAAAAC GCGGGGTCCGGTCAGCGTTAAGCCACAGTCGCCCGCCAGGCGGCCTCGGA GATCTGTGGCAAGCCTCGACCTTTCCTCCCGAGAGCCCTCTTGTCGTGAT CCTCAAGAGGGCGGGTCGCTTGAGGGTGTTCCGTTGTCAGCTGCTGAAAC CGCGGTCGGTTATGGCTCTCGATCGGGAGCTGGCCTTGACAACCAGGAGA GGGTCCGCGGCGGAGCTGTTGAACCGACGGCCATGGGAAAGGCAAGGGTG AGGAATGGGAAGTTTACTAGTAGGGTTTTGACAAGGCAGACCCGCCGACT TGCCCGGCAAAAATATTATCACCGCGCGACGAATATATCGCGTCTACGGG CGTGTGATGAGCCAGAACCGAGCGTTTGCCTCTTACTATCGCGCTGTGCC GTGATAGGGTTGCTTCCGCAGGCATGCTTCCGAAAGTCGCTACGCCAGCC TATACGAGTAGCTCTGCAAACAATCCTTGGAGCGCGTGTGTACTCAACCG CCAATGTCGAATCTAATGCTTGCGCACAATCGATCTGTTGCAGCATACTC GCTCTCTTTATTTTTACTGTTTTTGGTGTGCCTGTTATTGTGTTTTTATG TTCTTGTGCATGCAAACAGGGGGCAGCCGCGAAAGGTGAAGAGGATGCCA TGGCAGAGCCCTCGAAGCACAAGAGTTCTAGGCTTTCCTCGCGCAGTCTG ACCGCTGACTCATTTTCCGTGCAGAACCTCTTGGGCAGTCCCCTAGCAGA CGCGGAGGACGACGACCTGGAAGGTGTCGAACAGAACGCCGGCGGACGTC GAGCCGCGCGGAATACGAAGAACGACCCGCCGCCGTTGGATTTCAATATG GAGGTTGGCGTTTTCGTTGGTGAGGGCGAGCAAGGCACCGCCGGGGACGA TCACGGCGGGCAGACGGCGGACCTCAACGCCCTCTACGAGATGATGAATG ACACCGCAAGCGATCCCGATACGGTGTTGACCGCAGACCAACGTGTAACG CACTCCTCGCAGGCTGGAGGACACCGATCCCCCCCGCGAGGGTCAAGATT TGAGAGCGTGTCCTTTGAGAGCGCGTACGGTAATTTGCTGCCTTCGTCGG CGGGTCCATCGATTCGTGAG
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig121:779379..786198-

>mRNA_A-nodosum_M_contig121.64.1 ID=mRNA_A-nodosum_M_contig121.64.1|Name=mRNA_A-nodosum_M_contig121.64.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1707bp|location=Sequence derived from alignment at A-nodosum_M_contig121:779379..786198- (Ascophyllum nodosum dioecious)
ATGGAAATCGTTGACGAAAACTCGCCCCGTGCAGCGGGCTTGTCGTCGGC
AAGCGGAAAAGCCAAGCCCCGCGTGTCTAGTGGCTTCCCGTTGGCGGAGC
GATCGCGTGACGGCCAGGGAATTATTGGGCCTGCTCCGCCGTTGCGGCAG
AAGGGCTCGTCGGGAGGGATCGATGGGGATAGGGAGAGAGAGAGAGAGAG
AGAAGGACACCGTCGGAAGAGCAAGAGCTCGCGAAGGTTGACCGCCGACA
GCGCCGCCCTCGCCGACGTGCTGACGAACCTGGATATAGATCAAGACGAC
GGCGAGGCACCGGTGCCCTCCTTCTCCAAGAAATCCAAGAACCACGGGCA
AGAAAGCCGTCGCCTGACGGCGGATCCCTTGTCGATCAACTGCCTCCTCA
ACGATAGCGACAGCAGCACCGGCATCGGCATTGACGGCAGCCCCGGAGGG
GAAGGGAGGGATGCTGCCTTGGCTTCCAGTTCGATGCCGATGGATTTGGG
TTCCGACGACGACAACGACGACACCGGTATCGACGCGGAGCGCGGTAGTG
ACGCCTCAAATCGAACCGACGGGGTGGATGTGGGGAGCGAGGGCGCGATC
GGGGACCGTTCTATGGACCCATCTTTGGATCGCTTCCGGAGTTTTTTCTC
GGATTCTTCCATGAACCGTTCCTTGGAGGATAGGGCCGCGAGCGCAAGCG
CCGACAAAACGGAGGACTTTTCCTCGCTCTTCGGATTTACGGAGATGGAA
AGCCCACCTCCTATCATCGGGGAGATGGGGGGCGATGATCGCCACGTTGC
TGGTGTCCGTCCTAGGGCTCGCCACCACAGCAACCAGAAGCCCGCCCTGG
AAGACATCGCCCCCGTTCCAGCCGCGCCGCCTCTGCTGCCGTCGCGGCCC
CCTGGGGCCTCGGCTAGAATCAGCGGTGGCGGCATGAGAGACAGTGCAGG
TAGTAAAACGCGGGGTCCGGTCAGCGTTAAGCCACAGTCGCCCGCCAGGC
GGCCTCGGAGATCTGTGGCAAGCCTCGACCTTTCCTCCCGAGAGCCCTCT
TGTCGTGATCCTCAAGAGGGCGGGTCGCTTGAGGGTGTTCCGTTGTCAGC
TGCTGAAACCGCGGTCGGTTATGGCTCTCGATCGGGAGCTGGCCTTGACA
ACCAGGAGAGGGTCCGCGGCGGAGCTGTTGAACCGACGGCCATGGGAAAG
GCAAGGGGGGCAGCCGCGAAAGGTGAAGAGGATGCCATGGCAGAGCCCTC
GAAGCACAAGAGTTCTAGGCTTTCCTCGCGCAGTCTGACCGCTGACTCAT
TTTCCGTGCAGAACCTCTTGGGCAGTCCCCTAGCAGACGCGGAGGACGAC
GACCTGGAAGGTGTCGAACAGAACGCCGGCGGACGTCGAGCCGCGCGGAA
TACGAAGAACGACCCGCCGCCGTTGGATTTCAATATGGAGGTTGGCGTTT
TCGTTGGTGAGGGCGAGCAAGGCACCGCCGGGGACGATCACGGCGGGCAG
ACGGCGGACCTCAACGCCCTCTACGAGATGATGAATGACACCGCAAGCGA
TCCCGATACGGTGTTGACCGCAGACCAACGTGTAACGCACTCCTCGCAGG
CTGGAGGACACCGATCCCCCCCGCGAGGGTCAAGATTTGAGAGCGTGTCC
TTTGAGAGCGCGTACGGTAATTTGCTGCCTTCGTCGGCGGGTCCATCGAT
TCGTGAG
back to top