mRNA_A-nodosum_M_contig121.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig121.4.1
Unique NamemRNA_A-nodosum_M_contig121.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig121.4.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 5.140e-30
Identity = 56/90 (62.22%), Postives = 71/90 (78.89%), Query Frame = 2
Query:    5 MLTGQYVSMTTDGWTSRANESYISFTVVYVNDDWKMVTLALSCSKKQGSTKGEDLAISIETMIKNHGLTGHVVVCNTDCEPSMVKAGRIL 274
            ML  +YV++TTDGWTSR+NESY+S TV Y++  W++  L+L+C+K  GST GEDLA  I +MI+ HGLTG V  C TDCEPSMVKAGR+L
Sbjct:   71 MLDDEYVAITTDGWTSRSNESYMSLTVAYIDVGWQLHHLSLNCTKHTGSTHGEDLAREITSMIERHGLTGRVTACVTDCEPSMVKAGRLL 160          
BLAST of mRNA_A-nodosum_M_contig121.4.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 1.930e-28
Identity = 52/93 (55.91%), Postives = 70/93 (75.27%), Query Frame = 2
Query:    5 MLTGQYVSMTTDGWTSRANESYISFTVVYVNDDWKMVTLALSCSKKQGSTKGEDLAISIETMIKNHGLTGHVVVCNTDCEPSMVKAGRILTDD 283
            ML  ++V++TTDGWTSR NESY+S TV Y++ +WK+  L+L C+K  G+T GEDLA  +  M++ H LTG V+ C TDCEPSM+KAGR+L  D
Sbjct:   35 MLDAEFVAITTDGWTSRNNESYMSLTVAYIDYEWKLHHLSLDCAKHTGTTTGEDLAALVAGMVERHDLTGRVIACVTDCEPSMIKAGRLLEVD 127          
BLAST of mRNA_A-nodosum_M_contig121.4.1 vs. uniprot
Match: A0A6H5L7Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y8_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 8.790e-25
Identity = 47/96 (48.96%), Postives = 66/96 (68.75%), Query Frame = 2
Query:    5 MLTGQYVSMTTDGWTSRANESYISFTVVYVNDDWKMVTLALSCSKKQGSTKGEDLAISIETMIKNHGLTGHVVVCNTDCEPSMVKAGRILTDDAVL 292
            ++ G+ V +T+DGWTS AN++Y+S T   +   WK+VTL++ CSK +G+T G+ LA  I+  +  HGLTG V    TDCEPSMVK GR+L  DA +
Sbjct:   35 LIEGEQVCITSDGWTSCANDTYMSLTFTLITSAWKLVTLSVDCSKSEGTTTGDALAAGIKATVAKHGLTGKVTAVTTDCEPSMVKMGRLLAGDATV 130          
BLAST of mRNA_A-nodosum_M_contig121.4.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 4.890e-23
Identity = 44/92 (47.83%), Postives = 66/92 (71.74%), Query Frame = 2
Query:    8 LTGQYVSMTTDGWTSRANESYISFTVVYVNDDWKMVTLALSCSKKQGSTKGEDLAISIETMIKNHGLTGHVVVCNTDCEPSMVKAGRILTDD 283
            LTG++V++T+DGWTS +N++Y+ FT  Y++ ++ +V L + C K  G T GEDL  +++ MI  +GLT   V   TDCEPSMVKAGR+L ++
Sbjct:   45 LTGEHVAVTSDGWTSASNDTYMYFTCTYISSNFDLVALCVECKKHGGRTTGEDLVEAVKAMIARNGLTSRTVATTTDCEPSMVKAGRLLEEN 136          
BLAST of mRNA_A-nodosum_M_contig121.4.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 1.130e-21
Identity = 43/92 (46.74%), Postives = 65/92 (70.65%), Query Frame = 2
Query:    8 LTGQYVSMTTDGWTSRANESYISFTVVYVNDDWKMVTLALSCSKKQGSTKGEDLAISIETMIKNHGLTGHVVVCNTDCEPSMVKAGRILTDD 283
            +TG++V++T+DGWT  +N++Y+SFT  Y++ ++ +V L L C K    T GEDL  +++ MI  +GLTG  V   TDCE SMVKAGR+L ++
Sbjct:    1 MTGEHVALTSDGWTPASNDTYMSFTCTYISSNFDLVALCLECKKHGWRTAGEDLVEAVKAMIARNGLTGRTVAITTDCELSMVKAGRLLEEN 92          
BLAST of mRNA_A-nodosum_M_contig121.4.1 vs. uniprot
Match: A0A6H5KVI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI1_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 9.290e-15
Identity = 35/78 (44.87%), Postives = 52/78 (66.67%), Query Frame = 2
Query:   50 SRANESYISFTVVYVNDDWKMVTLALSCSKKQGSTKGEDLAISIETMIKNHGLTGHVVVCNTDCEPSMVKAGRILTDD 283
            S +N++Y++FT  Y++ ++ +V L L   K  G T GEDL  +++ MI  +GLTG  V   TDCEP MVKAGR+L ++
Sbjct:    3 SASNDTYMTFTCTYISSNFDLVALCLEYKKHGGRTTGEDLVEAVKAMIARNGLTGRTVATTTDCEPFMVKAGRLLEEN 80          
BLAST of mRNA_A-nodosum_M_contig121.4.1 vs. uniprot
Match: UPI001E1DF359 (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DF359)

HSP 1 Score: 67.8 bits (164), Expect = 3.810e-11
Identity = 37/88 (42.05%), Postives = 52/88 (59.09%), Query Frame = 2
Query:   23 VSMTTDGWTSRANESYISFTVVYVNDDWKMVTLALSCSKKQGSTKGEDLAISIETMIKNH----GLTGHVVVCNTDCEPSMVKAGRIL 274
            V++TTDGWTSRA ESY++ TV ++N DWK+V   L       S   E++A  IE  +K      GL G V    +D   +M+KAG++L
Sbjct:   30 VAITTDGWTSRATESYVTITVTFINVDWKLVNFVLQTRPLPESHTAENIAEVIEYAVKEWKLPTGLGGTVPPVISDNAANMIKAGKVL 117          
BLAST of mRNA_A-nodosum_M_contig121.4.1 vs. uniprot
Match: X1WY43_ACYPI (DUF659 domain-containing protein n=2 Tax=Acyrthosiphon pisum TaxID=7029 RepID=X1WY43_ACYPI)

HSP 1 Score: 63.9 bits (154), Expect = 6.610e-10
Identity = 32/90 (35.56%), Postives = 54/90 (60.00%), Query Frame = 2
Query:   20 YVSMTTDGWTSRANESYISFTVVYVNDDWKMVTLALSCSKKQGSTKGEDLAISIETMIKNHGLTGHVVVCNTDCEPSMVKAGRILTDDAV 289
            Y+S+TTDGWTS A +SY++FTV Y +D+WK+ ++ LS  + Q S   E+L  SI  +I++  L   +   + D   ++  A ++  D  +
Sbjct:   89 YISLTTDGWTSTAIDSYLTFTVHYFDDNWKLYSVTLSIEEIQESHTAENLKDSIMNVIESWNLNNKITGISHDNAANISNAVKLFYDQDI 178          
BLAST of mRNA_A-nodosum_M_contig121.4.1 vs. uniprot
Match: UPI001787775F (zinc finger BED domain-containing protein 1-like n=2 Tax=Rhagoletis pomonella TaxID=28610 RepID=UPI001787775F)

HSP 1 Score: 61.6 bits (148), Expect = 3.980e-9
Identity = 34/88 (38.64%), Postives = 54/88 (61.36%), Query Frame = 2
Query:   17 QYVSMTTDGWTSRANESYISFTVVYVNDDWKMVTLALSCSKKQGSTK--GEDLAISIETMIKNHGLTGHVVVCNTDCEPSMVKAGRIL 274
            +YV++TTDGWTS+ NESY++ T  ++N ++++ +  LS S    ST     ++A SI  ++   GL G VV   TD + +M KA  +L
Sbjct:  167 EYVAITTDGWTSKTNESYLTITCHFINTEFQLNSAVLSTSTLLTSTNHTAANIADSIRVVLTEWGLMGKVVSIVTDNDSTMKKACELL 254          
BLAST of mRNA_A-nodosum_M_contig121.4.1 vs. uniprot
Match: A0A8B8BVW9_CRAVI (zinc finger BED domain-containing protein 1-like n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8BVW9_CRAVI)

HSP 1 Score: 61.2 bits (147), Expect = 7.760e-9
Identity = 32/82 (39.02%), Postives = 46/82 (56.10%), Query Frame = 2
Query:   17 QYVSMTTDGWTSRANESYISFTVVYVNDDWKMVTLALSCSKKQGSTKGEDLAISIETMIKNHGLTGHVVVCNTDCEPSMVKA 262
            Q VS+TTD WTSR+ ESY++ T  +VN DW+M +  L   K  GS  GE +   ++T + + G+   V V   D   +M  A
Sbjct:  180 QAVSLTTDAWTSRSAESYLTITCHFVNKDWEMCSRILQTEKFHGSHTGERVGYELKTCMTSWGIQNKVNVMTVDNASNMTVA 261          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig121.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KUY5_9PHAE5.140e-3062.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCS5_ECTSI1.930e-2855.91Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A6H5L7Y8_9PHAE8.790e-2548.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJV8_9PHAE4.890e-2347.83Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JHP9_9PHAE1.130e-2146.74Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
A0A6H5KVI1_9PHAE9.290e-1544.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI001E1DF3593.810e-1142.05E3 SUMO-protein ligase ZBED1-like n=1 Tax=Mercenar... [more]
X1WY43_ACYPI6.610e-1035.56DUF659 domain-containing protein n=2 Tax=Acyrthosi... [more]
UPI001787775F3.980e-938.64zinc finger BED domain-containing protein 1-like n... [more]
A0A8B8BVW9_CRAVI7.760e-939.02zinc finger BED domain-containing protein 1-like n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig121contigA-nodosum_M_contig121:59433..59724 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G5Z0
PFAMsDUF659,Dimer_Tnp_hAT,zf-BED
Model size293
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.57e-29
EggNOG OGsKOG1121@1|root,KOG1121@2759|Eukaryota
Descriptionprotein dimerization activity
Cds size288
COG categoryE
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866636.4029438-CDS-A-nodosum_M_contig121:59432..597201680866636.4029438-CDS-A-nodosum_M_contig121:59432..59720Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig121 59433..59720 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866636.4126077-UTR-A-nodosum_M_contig121:59720..597241680866636.4126077-UTR-A-nodosum_M_contig121:59720..59724Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig121 59721..59724 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig121.4.1prot_A-nodosum_M_contig121.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig121 59433..59720 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig121.4.1

>prot_A-nodosum_M_contig121.4.1 ID=prot_A-nodosum_M_contig121.4.1|Name=mRNA_A-nodosum_M_contig121.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=96bp
MLTGQYVSMTTDGWTSRANESYISFTVVYVNDDWKMVTLALSCSKKQGST
KGEDLAISIETMIKNHGLTGHVVVCNTDCEPSMVKAGRILTDDAVL
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mRNA from alignment at A-nodosum_M_contig121:59433..59724-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig121.4.1 ID=mRNA_A-nodosum_M_contig121.4.1|Name=mRNA_A-nodosum_M_contig121.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=292bp|location=Sequence derived from alignment at A-nodosum_M_contig121:59433..59724- (Ascophyllum nodosum dioecious)
CACCATGCTGACGGGCCAGTACGTCTCCATGACCACGGACGGATGGACGT CACGCGCCAACGAGTCCTACATTTCCTTCACCGTCGTGTACGTCAATGAC GATTGGAAGATGGTGACGCTCGCGCTCAGCTGTTCGAAGAAACAAGGTTC GACGAAGGGGGAAGACCTGGCTATATCCATCGAGACCATGATCAAGAACC ACGGCCTCACCGGGCACGTGGTCGTGTGCAACACGGACTGCGAGCCGTCA ATGGTGAAGGCGGGTCGCATTCTCACCGATGATGCCGTATTG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig121:59433..59724-

>mRNA_A-nodosum_M_contig121.4.1 ID=mRNA_A-nodosum_M_contig121.4.1|Name=mRNA_A-nodosum_M_contig121.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=288bp|location=Sequence derived from alignment at A-nodosum_M_contig121:59433..59724- (Ascophyllum nodosum dioecious)
ATGCTGACGGGCCAGTACGTCTCCATGACCACGGACGGATGGACGTCACG
CGCCAACGAGTCCTACATTTCCTTCACCGTCGTGTACGTCAATGACGATT
GGAAGATGGTGACGCTCGCGCTCAGCTGTTCGAAGAAACAAGGTTCGACG
AAGGGGGAAGACCTGGCTATATCCATCGAGACCATGATCAAGAACCACGG
CCTCACCGGGCACGTGGTCGTGTGCAACACGGACTGCGAGCCGTCAATGG
TGAAGGCGGGTCGCATTCTCACCGATGATGCCGTATTG
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