mRNA_A-nodosum_M_contig121.4.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig121.4.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE) HSP 1 Score: 120 bits (302), Expect = 5.140e-30 Identity = 56/90 (62.22%), Postives = 71/90 (78.89%), Query Frame = 2
Query: 5 MLTGQYVSMTTDGWTSRANESYISFTVVYVNDDWKMVTLALSCSKKQGSTKGEDLAISIETMIKNHGLTGHVVVCNTDCEPSMVKAGRIL 274
ML +YV++TTDGWTSR+NESY+S TV Y++ W++ L+L+C+K GST GEDLA I +MI+ HGLTG V C TDCEPSMVKAGR+L
Sbjct: 71 MLDDEYVAITTDGWTSRSNESYMSLTVAYIDVGWQLHHLSLNCTKHTGSTHGEDLAREITSMIERHGLTGRVTACVTDCEPSMVKAGRLL 160
BLAST of mRNA_A-nodosum_M_contig121.4.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI) HSP 1 Score: 116 bits (291), Expect = 1.930e-28 Identity = 52/93 (55.91%), Postives = 70/93 (75.27%), Query Frame = 2
Query: 5 MLTGQYVSMTTDGWTSRANESYISFTVVYVNDDWKMVTLALSCSKKQGSTKGEDLAISIETMIKNHGLTGHVVVCNTDCEPSMVKAGRILTDD 283
ML ++V++TTDGWTSR NESY+S TV Y++ +WK+ L+L C+K G+T GEDLA + M++ H LTG V+ C TDCEPSM+KAGR+L D
Sbjct: 35 MLDAEFVAITTDGWTSRNNESYMSLTVAYIDYEWKLHHLSLDCAKHTGTTTGEDLAALVAGMVERHDLTGRVIACVTDCEPSMIKAGRLLEVD 127
BLAST of mRNA_A-nodosum_M_contig121.4.1 vs. uniprot
Match: A0A6H5L7Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y8_9PHAE) HSP 1 Score: 106 bits (265), Expect = 8.790e-25 Identity = 47/96 (48.96%), Postives = 66/96 (68.75%), Query Frame = 2
Query: 5 MLTGQYVSMTTDGWTSRANESYISFTVVYVNDDWKMVTLALSCSKKQGSTKGEDLAISIETMIKNHGLTGHVVVCNTDCEPSMVKAGRILTDDAVL 292
++ G+ V +T+DGWTS AN++Y+S T + WK+VTL++ CSK +G+T G+ LA I+ + HGLTG V TDCEPSMVK GR+L DA +
Sbjct: 35 LIEGEQVCITSDGWTSCANDTYMSLTFTLITSAWKLVTLSVDCSKSEGTTTGDALAAGIKATVAKHGLTGKVTAVTTDCEPSMVKMGRLLAGDATV 130
BLAST of mRNA_A-nodosum_M_contig121.4.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE) HSP 1 Score: 101 bits (251), Expect = 4.890e-23 Identity = 44/92 (47.83%), Postives = 66/92 (71.74%), Query Frame = 2
Query: 8 LTGQYVSMTTDGWTSRANESYISFTVVYVNDDWKMVTLALSCSKKQGSTKGEDLAISIETMIKNHGLTGHVVVCNTDCEPSMVKAGRILTDD 283
LTG++V++T+DGWTS +N++Y+ FT Y++ ++ +V L + C K G T GEDL +++ MI +GLT V TDCEPSMVKAGR+L ++
Sbjct: 45 LTGEHVAVTSDGWTSASNDTYMYFTCTYISSNFDLVALCVECKKHGGRTTGEDLVEAVKAMIARNGLTSRTVATTTDCEPSMVKAGRLLEEN 136
BLAST of mRNA_A-nodosum_M_contig121.4.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE) HSP 1 Score: 97.8 bits (242), Expect = 1.130e-21 Identity = 43/92 (46.74%), Postives = 65/92 (70.65%), Query Frame = 2
Query: 8 LTGQYVSMTTDGWTSRANESYISFTVVYVNDDWKMVTLALSCSKKQGSTKGEDLAISIETMIKNHGLTGHVVVCNTDCEPSMVKAGRILTDD 283
+TG++V++T+DGWT +N++Y+SFT Y++ ++ +V L L C K T GEDL +++ MI +GLTG V TDCE SMVKAGR+L ++
Sbjct: 1 MTGEHVALTSDGWTPASNDTYMSFTCTYISSNFDLVALCLECKKHGWRTAGEDLVEAVKAMIARNGLTGRTVAITTDCELSMVKAGRLLEEN 92
BLAST of mRNA_A-nodosum_M_contig121.4.1 vs. uniprot
Match: A0A6H5KVI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI1_9PHAE) HSP 1 Score: 77.8 bits (190), Expect = 9.290e-15 Identity = 35/78 (44.87%), Postives = 52/78 (66.67%), Query Frame = 2
Query: 50 SRANESYISFTVVYVNDDWKMVTLALSCSKKQGSTKGEDLAISIETMIKNHGLTGHVVVCNTDCEPSMVKAGRILTDD 283
S +N++Y++FT Y++ ++ +V L L K G T GEDL +++ MI +GLTG V TDCEP MVKAGR+L ++
Sbjct: 3 SASNDTYMTFTCTYISSNFDLVALCLEYKKHGGRTTGEDLVEAVKAMIARNGLTGRTVATTTDCEPFMVKAGRLLEEN 80
BLAST of mRNA_A-nodosum_M_contig121.4.1 vs. uniprot
Match: UPI001E1DF359 (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DF359) HSP 1 Score: 67.8 bits (164), Expect = 3.810e-11 Identity = 37/88 (42.05%), Postives = 52/88 (59.09%), Query Frame = 2
Query: 23 VSMTTDGWTSRANESYISFTVVYVNDDWKMVTLALSCSKKQGSTKGEDLAISIETMIKNH----GLTGHVVVCNTDCEPSMVKAGRIL 274
V++TTDGWTSRA ESY++ TV ++N DWK+V L S E++A IE +K GL G V +D +M+KAG++L
Sbjct: 30 VAITTDGWTSRATESYVTITVTFINVDWKLVNFVLQTRPLPESHTAENIAEVIEYAVKEWKLPTGLGGTVPPVISDNAANMIKAGKVL 117
BLAST of mRNA_A-nodosum_M_contig121.4.1 vs. uniprot
Match: X1WY43_ACYPI (DUF659 domain-containing protein n=2 Tax=Acyrthosiphon pisum TaxID=7029 RepID=X1WY43_ACYPI) HSP 1 Score: 63.9 bits (154), Expect = 6.610e-10 Identity = 32/90 (35.56%), Postives = 54/90 (60.00%), Query Frame = 2
Query: 20 YVSMTTDGWTSRANESYISFTVVYVNDDWKMVTLALSCSKKQGSTKGEDLAISIETMIKNHGLTGHVVVCNTDCEPSMVKAGRILTDDAV 289
Y+S+TTDGWTS A +SY++FTV Y +D+WK+ ++ LS + Q S E+L SI +I++ L + + D ++ A ++ D +
Sbjct: 89 YISLTTDGWTSTAIDSYLTFTVHYFDDNWKLYSVTLSIEEIQESHTAENLKDSIMNVIESWNLNNKITGISHDNAANISNAVKLFYDQDI 178
BLAST of mRNA_A-nodosum_M_contig121.4.1 vs. uniprot
Match: UPI001787775F (zinc finger BED domain-containing protein 1-like n=2 Tax=Rhagoletis pomonella TaxID=28610 RepID=UPI001787775F) HSP 1 Score: 61.6 bits (148), Expect = 3.980e-9 Identity = 34/88 (38.64%), Postives = 54/88 (61.36%), Query Frame = 2
Query: 17 QYVSMTTDGWTSRANESYISFTVVYVNDDWKMVTLALSCSKKQGSTK--GEDLAISIETMIKNHGLTGHVVVCNTDCEPSMVKAGRIL 274
+YV++TTDGWTS+ NESY++ T ++N ++++ + LS S ST ++A SI ++ GL G VV TD + +M KA +L
Sbjct: 167 EYVAITTDGWTSKTNESYLTITCHFINTEFQLNSAVLSTSTLLTSTNHTAANIADSIRVVLTEWGLMGKVVSIVTDNDSTMKKACELL 254
BLAST of mRNA_A-nodosum_M_contig121.4.1 vs. uniprot
Match: A0A8B8BVW9_CRAVI (zinc finger BED domain-containing protein 1-like n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8BVW9_CRAVI) HSP 1 Score: 61.2 bits (147), Expect = 7.760e-9 Identity = 32/82 (39.02%), Postives = 46/82 (56.10%), Query Frame = 2
Query: 17 QYVSMTTDGWTSRANESYISFTVVYVNDDWKMVTLALSCSKKQGSTKGEDLAISIETMIKNHGLTGHVVVCNTDCEPSMVKA 262
Q VS+TTD WTSR+ ESY++ T +VN DW+M + L K GS GE + ++T + + G+ V V D +M A
Sbjct: 180 QAVSLTTDAWTSRSAESYLTITCHFVNKDWEMCSRILQTEKFHGSHTGERVGYELKTCMTSWGIQNKVNVMTVDNASNMTVA 261 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig121.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig121.4.1 >prot_A-nodosum_M_contig121.4.1 ID=prot_A-nodosum_M_contig121.4.1|Name=mRNA_A-nodosum_M_contig121.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=96bp MLTGQYVSMTTDGWTSRANESYISFTVVYVNDDWKMVTLALSCSKKQGSTback to top mRNA from alignment at A-nodosum_M_contig121:59433..59724- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig121.4.1 ID=mRNA_A-nodosum_M_contig121.4.1|Name=mRNA_A-nodosum_M_contig121.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=292bp|location=Sequence derived from alignment at A-nodosum_M_contig121:59433..59724- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig121:59433..59724- >mRNA_A-nodosum_M_contig121.4.1 ID=mRNA_A-nodosum_M_contig121.4.1|Name=mRNA_A-nodosum_M_contig121.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=288bp|location=Sequence derived from alignment at A-nodosum_M_contig121:59433..59724- (Ascophyllum nodosum dioecious)back to top |