mRNA_A-nodosum_M_contig121.13.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig121.13.1
Unique NamemRNA_A-nodosum_M_contig121.13.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig121.13.1 vs. uniprot
Match: A0A6H5KBD2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBD2_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 4.120e-27
Identity = 52/95 (54.74%), Postives = 67/95 (70.53%), Query Frame = 3 
Query:    6 IPVKNLGELK*YGGCRYSRDRERGTLTISQHSFAEELVKKFGMTSVQNVPLRVGLKLKDFDEDEETENWPFCELVGGLMWLAISTRECFNDWGER 290
            +PVKNLG+L+ Y GC Y RD + GTL ISQ ++AEEL  +FG+   + +PL VGLKL +FD+DEE  +WPF EL+G LMWLA  TR    + G R
Sbjct:   72 VPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAGMR 166
[Close]
BLAST of mRNA_A-nodosum_M_contig121.13.1 vs. uniprot
Match: A0A6H5L0C9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0C9_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 8.460e-27
Identity = 51/86 (59.30%), Postives = 65/86 (75.58%), Query Frame = 3 
Query:    6 IPVKNLGELK*YGGCRYSRDRERGTLTISQHSFAEELVKKFGMTSVQNVPLRVGLKLKDFDEDEETENWPFCELVGGLMWLAISTR 263
            +PVKNLG+L+ Y GC Y RDR+ GTL ISQ ++AEEL  +FG+   + +PL VGLKL +FD+DEE  +WPF EL+G LMWLA  TR
Sbjct:  606 VPVKNLGDLRWYSGCFYERDRDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTR 691
[Close]
BLAST of mRNA_A-nodosum_M_contig121.13.1 vs. uniprot
Match: A0A6H5KJF9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJF9_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 1.080e-26
Identity = 48/87 (55.17%), Postives = 63/87 (72.41%), Query Frame = 3 
Query:    3 AIPVKNLGELK*YGGCRYSRDRERGTLTISQHSFAEELVKKFGMTSVQNVPLRVGLKLKDFDEDEETENWPFCELVGGLMWLAISTR 263
            ++PVKNLGEL+ Y GC Y R +E G LTISQ +F +EL  ++G+   ++VP+  G+KL DFD DEE  ++PFCELVG LMWLA   R
Sbjct:  124 SVPVKNLGELRWYSGCFYERSKETGRLTISQQTFTDELAAEYGVAGGKSVPMSSGVKLSDFDADEEATDFPFCELVGSLMWLATQIR 210
[Close]
BLAST of mRNA_A-nodosum_M_contig121.13.1 vs. uniprot
Match: A0A6H5JH88_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH88_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 2.250e-26
Identity = 49/86 (56.98%), Postives = 64/86 (74.42%), Query Frame = 3 
Query:    6 IPVKNLGELK*YGGCRYSRDRERGTLTISQHSFAEELVKKFGMTSVQNVPLRVGLKLKDFDEDEETENWPFCELVGGLMWLAISTR 263
            +PVKNLG+L+ Y GC Y RD + G+L ISQ ++AEEL  +FG+   + +PL VGLKL +FD+DEE  +WPF EL+G LMWLA  TR
Sbjct:  121 VPVKNLGDLRWYSGCFYERDWDAGSLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTR 206
[Close]
BLAST of mRNA_A-nodosum_M_contig121.13.1 vs. uniprot
Match: A0A6H5L0Z9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Z9_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 2.840e-26
Identity = 50/86 (58.14%), Postives = 64/86 (74.42%), Query Frame = 3 
Query:    6 IPVKNLGELK*YGGCRYSRDRERGTLTISQHSFAEELVKKFGMTSVQNVPLRVGLKLKDFDEDEETENWPFCELVGGLMWLAISTR 263
            +PVKNLG+L+ Y GC Y RD + GTL ISQ ++AEEL  +FG+   + +PL VGLKL +FD+DEE  +WPF EL+G LMWLA  TR
Sbjct:   88 VPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTR 173
[Close]
BLAST of mRNA_A-nodosum_M_contig121.13.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 2.900e-26
Identity = 50/86 (58.14%), Postives = 64/86 (74.42%), Query Frame = 3 
Query:    6 IPVKNLGELK*YGGCRYSRDRERGTLTISQHSFAEELVKKFGMTSVQNVPLRVGLKLKDFDEDEETENWPFCELVGGLMWLAISTR 263
            +PVKNLG+L+ Y GC Y RD + GTL ISQ ++AEEL  +FG+   + +PL VGLKL +FD+DEE  +WPF EL+G LMWLA  TR
Sbjct:  147 VPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTR 232
[Close]
BLAST of mRNA_A-nodosum_M_contig121.13.1 vs. uniprot
Match: A0A6H5KSD7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSD7_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 5.900e-26
Identity = 59/135 (43.70%), Postives = 80/135 (59.26%), Query Frame = 3 
Query:    6 IPVKNLGELK*YGGCRYSRDRERGTLTISQHSFAEELVKKFGMTSVQNVPLRVGLKLKDFDEDEETENWPFCELVGGLMWLAISTRECFNDWGERGYDDSVPEEVTKTIPSGDRTT*SPTTWSASLPRIQLISPG 410
            +PVKNLG+L+ Y GC Y RD + GTL ISQ ++AEEL  +FG+   + +PL VGLKL +FD+DEE  +WPF EL+G LMWLA  TR    D         +   + + +P G   T   + W  SL + Q+   G
Sbjct:  330 VPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTRP---DIANAALTAGL---LRRRLPKGQVRT---SNWETSLTKEQITYAG 455
[Close]
BLAST of mRNA_A-nodosum_M_contig121.13.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 8.170e-26
Identity = 50/86 (58.14%), Postives = 64/86 (74.42%), Query Frame = 3 
Query:    6 IPVKNLGELK*YGGCRYSRDRERGTLTISQHSFAEELVKKFGMTSVQNVPLRVGLKLKDFDEDEETENWPFCELVGGLMWLAISTR 263
            +PVKNLG+L+ Y GC Y RD + GTL ISQ ++AEEL  +FG+   + +PL VGLKL +FD+DEE  +WPF EL+G LMWLA  TR
Sbjct:  321 VPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTR 406
[Close]
BLAST of mRNA_A-nodosum_M_contig121.13.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 1.030e-25
Identity = 50/86 (58.14%), Postives = 64/86 (74.42%), Query Frame = 3 
Query:    6 IPVKNLGELK*YGGCRYSRDRERGTLTISQHSFAEELVKKFGMTSVQNVPLRVGLKLKDFDEDEETENWPFCELVGGLMWLAISTR 263
            +PVKNLG+L+ Y GC Y RD + GTL ISQ ++AEEL  +FG+   + +PL VGLKL +FD+DEE  +WPF EL+G LMWLA  TR
Sbjct:  842 VPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTR 927
[Close]
BLAST of mRNA_A-nodosum_M_contig121.13.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 1.050e-25
Identity = 50/86 (58.14%), Postives = 64/86 (74.42%), Query Frame = 3 
Query:    6 IPVKNLGELK*YGGCRYSRDRERGTLTISQHSFAEELVKKFGMTSVQNVPLRVGLKLKDFDEDEETENWPFCELVGGLMWLAISTR 263
            +PVKNLG+L+ Y GC Y RD + GTL ISQ ++AEEL  +FG+   + +PL VGLKL +FD+DEE  +WPF EL+G LMWLA  TR
Sbjct:  121 VPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTR 206
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig121.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBD2_9PHAE4.120e-2754.74Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L0C9_9PHAE8.460e-2759.30Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KJF9_9PHAE1.080e-2655.17Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JH88_9PHAE2.250e-2656.98Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L0Z9_9PHAE2.840e-2658.14Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JLN0_9PHAE2.900e-2658.14Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSD7_9PHAE5.900e-2643.70Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQB8_9PHAE8.170e-2658.14Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K2R1_9PHAE1.030e-2558.14Integrase catalytic domain-containing protein n=3 ... [more]
A0A6H5JBA7_9PHAE1.050e-2558.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig121contigA-nodosum_M_contig121:400793..401367 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size575
Hectar predicted targeting categoryother localisation
Exons1
Cds size225
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866636.4443815-UTR-A-nodosum_M_contig121:400792..4009231680866636.4443815-UTR-A-nodosum_M_contig121:400792..400923Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig121 400793..400923 +
1680866636.4671674-UTR-A-nodosum_M_contig121:401148..4013671680866636.4671674-UTR-A-nodosum_M_contig121:401148..401367Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig121 401149..401367 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866636.4542212-CDS-A-nodosum_M_contig121:400923..4011481680866636.4542212-CDS-A-nodosum_M_contig121:400923..401148Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig121 400924..401148 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig121.13.1prot_A-nodosum_M_contig121.13.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig121 400924..401148 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig121.13.1

>prot_A-nodosum_M_contig121.13.1 ID=prot_A-nodosum_M_contig121.13.1|Name=mRNA_A-nodosum_M_contig121.13.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=75bp
MTSVQNVPLRVGLKLKDFDEDEETENWPFCELVGGLMWLAISTRECFNDW
GERGYDDSVPEEVTKTIPSGDRTT*
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mRNA from alignment at A-nodosum_M_contig121:400793..401367+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig121.13.1 ID=mRNA_A-nodosum_M_contig121.13.1|Name=mRNA_A-nodosum_M_contig121.13.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=575bp|location=Sequence derived from alignment at A-nodosum_M_contig121:400793..401367+ (Ascophyllum nodosum dioecious)
GAGCGATTCCCGTCAAAAACTTAGGTGAACTGAAATAGTATGGAGGATGC
CGCTACTCGAGGGACCGCGAAAGGGGTACTCTAACGATATCCCAACATAG
TTTCGCGGAGGAATTGGTGAAGAAATTCGGTATGACTTCCGTACAGAACG
TTCCGCTTAGAGTAGGACTTAAATTGAAGGATTTCGATGAAGACGAAGAA
ACTGAGAATTGGCCGTTTTGTGAACTTGTTGGTGGTCTAATGTGGTTGGC
GATTTCGACACGCGAATGTTTCAACGATTGGGGGGAGCGGGGATACGACG
ATTCCGTCCCGGAGGAGGTCACCAAAACAATCCCTTCCGGGGATAGGACT
ACGTAATCCCCTACTACATGGTCGGCAAGCTTGCCCCGAATTCAACTCAT
TTCACCAGGGGGTTGGTCAAATATGTCCCCGGGAGGGGTTATTTTCGTGT
TGTCCCCTCTCAAAACGGGGACATATTTGTGACATCCCCGCCCCCCCCCC
AATCACTGAACGAGGGACCCCCCGATATTTCCAACGTAGTTCGATCCGTT
GCGAGGTACTGTTCCACGCCGAAAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig121:400793..401367+

>mRNA_A-nodosum_M_contig121.13.1 ID=mRNA_A-nodosum_M_contig121.13.1|Name=mRNA_A-nodosum_M_contig121.13.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=225bp|location=Sequence derived from alignment at A-nodosum_M_contig121:400793..401367+ (Ascophyllum nodosum dioecious)
ATGACTTCCGTACAGAACGTTCCGCTTAGAGTAGGACTTAAATTGAAGGA
TTTCGATGAAGACGAAGAAACTGAGAATTGGCCGTTTTGTGAACTTGTTG
GTGGTCTAATGTGGTTGGCGATTTCGACACGCGAATGTTTCAACGATTGG
GGGGAGCGGGGATACGACGATTCCGTCCCGGAGGAGGTCACCAAAACAAT
CCCTTCCGGGGATAGGACTACGTAA
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