mRNA_A-nodosum_M_contig12090.1.2 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig12090.1.2
Unique NamemRNA_A-nodosum_M_contig12090.1.2
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig12090.1.2 vs. uniprot
Match: A0A6H5L0C0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0C0_9PHAE)

HSP 1 Score: 317 bits (812), Expect = 2.470e-99
Identity = 170/238 (71.43%), Postives = 190/238 (79.83%), Query Frame = 1 
Query:  361 GCTFYSLRDHT----GDGTL-ASFDAISEIVKAGPGAATAAVQGFLKSSIAKVEELGPLGPLYFGGLYVLAEVLIIPALPLTTTAGFLFGVPGGTAVVLISATIAAVISFQLGRTLLRKQIEGLLEENPKFRVIDKAIAKEGFKIILCLRLSPIFPFALSNYLYGATSVDFLEFMGGTLIGFFPGTLAYVYGGTVGKGLMDGGGMSFPWYGNVAVIVFVAFLLKTVGDIATNAIEEIE 1059
            G  +Y L DHT    G G   A+ ++  E  KAG  A + AVQ FL SS+ KVEELGPLG +YFG LYVLAEVLIIPA+PLT  AGFLFG  GGTAVVL SATIAA ISFQLGRTLLR+Q+EGLLEENPKFR +DKAIAKEGFK+IL LRLSPIFPFALSNYLYG TSVDFLE+M GTL+GFFPGTLAYVYGGT+GK + DGGG   PWYG VA     A+LLKTVG+IAT A+EE+E
Sbjct:  181 GALYYGLHDHTLGGGGGGPFSATVESAVETAKAGHSAPSTAVQAFLSSSVTKVEELGPLGVVYFGLLYVLAEVLIIPAIPLTAAAGFLFGAAGGTAVVLTSATIAAAISFQLGRTLLRQQVEGLLEENPKFRALDKAIAKEGFKVILLLRLSPIFPFALSNYLYGVTSVDFLEYMMGTLLGFFPGTLAYVYGGTLGKVVTDGGGTGLPWYGYVAGAALTAYLLKTVGEIATAAVEEME 418
[Close]
BLAST of mRNA_A-nodosum_M_contig12090.1.2 vs. uniprot
Match: A0A835ZF34_9STRA (Snare associated Golgi protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF34_9STRA)

HSP 1 Score: 233 bits (593), Expect = 7.340e-70
Identity = 121/193 (62.69%), Postives = 147/193 (76.17%), Query Frame = 1 
Query:  502 VEELGPLGPLYFGGLYVLAEVLIIPALPLTTTAGFLFGVPGGTAVVLISATIAAVISFQLGRTLLRKQIEGLLEENPKFRVIDKAIAKEGFKIILCLRLSPIFPFALSNYLYGATSVDFLEFMGGTLIGFFPGTLAYVYGGTVGKGLMDGG-GMSFPWYGNVAVIVFVAFLLKTVGDIATNAIEEIEPGWRDD 1077
            ++  GP+G LYFG LYV+AEVL IPALPLT ++G+LFG+ GGT VV+ SATIAA ISF LGRT LRK +E LL +N KF+ ID AI +EGFKIIL LRLSPIFPFA+SNYLYG TSV F E++G +++GF PGT+AYVYGG     L+DGG G   PWYG    +V VA  +K VGDIAT A+ EIEPG  ++
Sbjct:    2 IQSAGPMGYLYFGALYVIAEVLAIPALPLTASSGYLFGLVGGTTVVICSATIAAGISFLLGRTFLRKWVEELLGDNAKFKAIDSAIGREGFKIILLLRLSPIFPFAISNYLYGITSVPFWEYLGASMLGFLPGTIAYVYGGGQLGSLVDGGDGGGLPWYGYALGLVAVAATIKLVGDIATKAVAEIEPGIMEE 194
[Close]
BLAST of mRNA_A-nodosum_M_contig12090.1.2 vs. uniprot
Match: A0A448YYH2_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YYH2_9STRA)

HSP 1 Score: 221 bits (563), Expect = 1.020e-62
Identity = 114/186 (61.29%), Postives = 140/186 (75.27%), Query Frame = 1 
Query:  505 EELGPLGPLYFGGLYVLAEVLIIPALPLTTTAGFLFGVPGGTAVVLISATIAAVISFQLGRTLLRKQIEGLLEENPKFRVIDKAIAKEGFKIILCLRLSPIFPFALSNYLYGATSVDFLEFMGGTLIGFFPGTLAYVYGGTVGKGLM-DGGGMSFPWYGNVAVIVFVAFLLKTVGDIATNAIEEIE 1059
            E +GPLG  YFG  Y +AE+L IPA+PLT +AG+LFG   GTAVVL+SA++AA +SF +GRT LR+ +EGLLEENP+F  +DKAI +EGFK++L LRLSPIFPFALSNYLYGATS++F  F GGTL+GF PGT+AYVY G VGK L  D GG ++PWY     +   A  LK V D AT  + EIE
Sbjct:  206 ESMGPLGVAYFGVAYCIAEILAIPAIPLTASAGYLFGPVQGTAVVLLSASVAAGVSFWIGRTFLREYVEGLLEENPRFGKLDKAIGREGFKLMLLLRLSPIFPFALSNYLYGATSINFSAFFGGTLLGFAPGTIAYVYTGYVGKALTGDAGGDAYPWYVYGGGLALFAAFLKVVADEATRVVREIE 391
[Close]
BLAST of mRNA_A-nodosum_M_contig12090.1.2 vs. uniprot
Match: A0A7R9WRQ5_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WRQ5_9STRA)

HSP 1 Score: 213 bits (541), Expect = 3.630e-61
Identity = 107/193 (55.44%), Postives = 141/193 (73.06%), Query Frame = 1 
Query:  481 LKSSIAKVEELGPLGPLYFGGLYVLAEVLIIPALPLTTTAGFLFGVPGGTAVVLISATIAAVISFQLGRTLLRKQIEGLLEENPKFRVIDKAIAKEGFKIILCLRLSPIFPFALSNYLYGATSVDFLEFMGGTLIGFFPGTLAYVYGGTVGKGLMDGGGMSFPWYGNVAVIVFVAFLLKTVGDIATNAIEEIE 1059
            L+  +  V  +GPLG +YFG  Y +AE+L IPA+PLT +AG+LFG   GT VVL+SA+IAA ISF +GRTLLR  +EG+L++ PKF  IDKAI KEGFK++  LRLSP+FPFALSNYLYGA+S++F  F  GTL+GF PGT+AYVY G VGK L   G   +PWY  V  +  ++ L+K + D AT  ++E++
Sbjct:   73 LERVVDAVASMGPLGAVYFGVAYTIAEILAIPAIPLTASAGYLFGPVQGTGVVLVSASIAAAISFLIGRTLLRDYVEGVLQDFPKFAKIDKAIGKEGFKLMFLLRLSPVFPFALSNYLYGASSINFSAFFWGTLLGFAPGTMAYVYTGYVGKALTTEGSEVYPWYFYVGGLALLSGLIKVLADTATRIVDELD 265
[Close]
BLAST of mRNA_A-nodosum_M_contig12090.1.2 vs. uniprot
Match: A0A7S1FUG6_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FUG6_9STRA)

HSP 1 Score: 209 bits (531), Expect = 2.980e-60
Identity = 107/196 (54.59%), Postives = 140/196 (71.43%), Query Frame = 1 
Query:  472 QGFLKSSIAKVEELGPLGPLYFGGLYVLAEVLIIPALPLTTTAGFLFGVPGGTAVVLISATIAAVISFQLGRTLLRKQIEGLLEENPKFRVIDKAIAKEGFKIILCLRLSPIFPFALSNYLYGATSVDFLEFMGGTLIGFFPGTLAYVYGGTVGKGLMDGGGMSFPWYGNVAVIVFVAFLLKTVGDIATNAIEEIE 1059
            Q  L  ++ ++E  G +G LYFG +Y +AE+L IPA+PLT +AG+LFGV  GTAVVL++A++AA +SF LGR  LR  +E +LE+NP+F+ +D AI KEGFK++L LRLSPIFPFALSNYLYG TSV F  +  GT++GF PGTLAYVY G  GK L    GM+ PWY     +   A  +K + DIAT  IE++E
Sbjct:   25 QQLLTDAVVQIEAAGAMGYLYFGVIYTIAEILAIPAIPLTASAGYLFGVLPGTAVVLVAASVAASVSFLLGRYALRGAVEKILEDNPRFKAMDAAIGKEGFKLMLLLRLSPIFPFALSNYLYGVTSVRFWPYFWGTMLGFAPGTLAYVYTGEFGKALTMDAGMAAPWYIYAGGLALGACGIKIIADIATRTIEDME 220
[Close]
BLAST of mRNA_A-nodosum_M_contig12090.1.2 vs. uniprot
Match: A0A7S4I716_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I716_9STRA)

HSP 1 Score: 213 bits (542), Expect = 5.850e-60
Identity = 115/207 (55.56%), Postives = 146/207 (70.53%), Query Frame = 1 
Query:  460 TAAVQGF-------LKSSIAKVEELGPLGPLYFGGLYVLAEVLIIPALPLTTTAGFLFGVPGGTAVVLISATIAAVISFQLGRTLLRKQIEGLLEENPKFRVIDKAIAKEGFKIILCLRLSPIFPFALSNYLYGATSVDFLEFMGGTLIGFFPGTLAYVYGGTVGKGLMDGGGMSFPWYGNVAVIVFVAFLLKTVGDIATNAIEEIE 1059
            T AVQ F       L++ +  VE +GP G LYFG +Y +AE+L IPA+PLT +AG+LFGV  GTAVVL SA+IAA ISF +GRTLLR  +E +LE+ PKF+ IDKAI +EGFK++L LRLSPIFPFALSNYLYGATS+ F  +  GT++GF PGT+AYVY G +GK L      + PWY     +  +A  LK V D+AT  IE ++
Sbjct:  169 TMAVQRFFSDPNASLEAVVKSVEAMGPSGFLYFGIIYTVAEILAIPAIPLTASAGYLFGVTEGTAVVLASASIAAAISFIIGRTLLRTYVESVLEDYPKFKKIDKAIGREGFKLMLLLRLSPIFPFALSNYLYGATSIGFWPYFFGTMLGFTPGTIAYVYTGEIGKALTLDSATAEPWYVYAGGMTLLAGCLKVVADVATGIIENLD 375
[Close]
BLAST of mRNA_A-nodosum_M_contig12090.1.2 vs. uniprot
Match: A0A7S1FUT1_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FUT1_9STRA)

HSP 1 Score: 209 bits (531), Expect = 1.730e-58
Identity = 107/196 (54.59%), Postives = 140/196 (71.43%), Query Frame = 1 
Query:  472 QGFLKSSIAKVEELGPLGPLYFGGLYVLAEVLIIPALPLTTTAGFLFGVPGGTAVVLISATIAAVISFQLGRTLLRKQIEGLLEENPKFRVIDKAIAKEGFKIILCLRLSPIFPFALSNYLYGATSVDFLEFMGGTLIGFFPGTLAYVYGGTVGKGLMDGGGMSFPWYGNVAVIVFVAFLLKTVGDIATNAIEEIE 1059
            Q  L  ++ ++E  G +G LYFG +Y +AE+L IPA+PLT +AG+LFGV  GTAVVL++A++AA +SF LGR  LR  +E +LE+NP+F+ +D AI KEGFK++L LRLSPIFPFALSNYLYG TSV F  +  GT++GF PGTLAYVY G  GK L    GM+ PWY     +   A  +K + DIAT  IE++E
Sbjct:  163 QQLLTDAVVQIEAAGAMGYLYFGVIYTIAEILAIPAIPLTASAGYLFGVLPGTAVVLVAASVAASVSFLLGRYALRGAVEKILEDNPRFKAMDAAIGKEGFKLMLLLRLSPIFPFALSNYLYGVTSVRFWPYFWGTMLGFAPGTLAYVYTGEFGKALTMDAGMAAPWYIYAGGLALGACGIKIIADIATRTIEDME 358
[Close]
BLAST of mRNA_A-nodosum_M_contig12090.1.2 vs. uniprot
Match: A0A7S2K1V4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K1V4_9STRA)

HSP 1 Score: 207 bits (527), Expect = 2.310e-58
Identity = 104/165 (63.03%), Postives = 130/165 (78.79%), Query Frame = 1 
Query:  481 LKSSIAKVEELGPLGPLYFGGLYVLAEVLIIPALPLTTTAGFLFGVPGGTAVVLISATIAAVISFQLGRTLLRKQIEGLLEENPKFRVIDKAIAKEGFKIILCLRLSPIFPFALSNYLYGATSVDFLEFMGGTLIGFFPGTLAYVYGGTVGKGLMDGGGMSFPWY 975
            L++ +++VE +G LG LYFG  Y +AE+L IPA PLT +AG+LFG+ GGT +VL+SA+IAA ISF +GRT LR  +EGLLE+ PKF+ +DKAI KEGFK+IL LRLSP+FPFALSNYLYG TSV F+E+  GTL+GF PGT+AYVY G VGK L    G + PWY
Sbjct:  156 LENIVSQVETMGNLGFLYFGIFYTIAEILAIPAFPLTCSAGYLFGLQGGTTIVLLSASIAASISFLIGRTALRSYVEGLLEKYPKFKAMDKAIGKEGFKLILLLRLSPLFPFALSNYLYGVTSVRFVEYFWGTLLGFLPGTMAYVYSGDVGKALTLDSGNAQPWY 320
[Close]
BLAST of mRNA_A-nodosum_M_contig12090.1.2 vs. uniprot
Match: A0A7S0CCP1_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CCP1_9STRA)

HSP 1 Score: 202 bits (515), Expect = 2.320e-58
Identity = 101/190 (53.16%), Postives = 138/190 (72.63%), Query Frame = 1 
Query:  490 SIAKVEELGPLGPLYFGGLYVLAEVLIIPALPLTTTAGFLFGVPGGTAVVLISATIAAVISFQLGRTLLRKQIEGLLEENPKFRVIDKAIAKEGFKIILCLRLSPIFPFALSNYLYGATSVDFLEFMGGTLIGFFPGTLAYVYGGTVGKGLMDGGGMSFPWYGNVAVIVFVAFLLKTVGDIATNAIEEIE 1059
            ++ +++++GP G  YFG +Y +AE+L IPA+PLT +AG+LFGV  GT +VL+SA+IAA ISF +GRTLLR  +EG+L E PK + +D+AI+ +GFKI+L +R++PIFPFALSNYLYG TSV F  +  GT++GF PGT AYVY G VGK L  G   + PWY     +   +  LK  GDIA++ I+ IE
Sbjct:    3 TVTQIQDMGPSGVAYFGFIYTIAEILAIPAIPLTASAGYLFGVRDGTLIVLLSASIAASISFFIGRTLLRSYVEGILGEYPKLQKLDRAISSQGFKIMLLVRIAPIFPFALSNYLYGVTSVKFWPYFWGTMLGFAPGTFAYVYSGVVGKILTSGDDAAQPWYVYAGGLALFSGFLKIGGDIASDIIDNIE 192
[Close]
BLAST of mRNA_A-nodosum_M_contig12090.1.2 vs. uniprot
Match: K0R4C6_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R4C6_THAOC)

HSP 1 Score: 201 bits (510), Expect = 1.070e-55
Identity = 105/180 (58.33%), Postives = 134/180 (74.44%), Query Frame = 1 
Query:  529 LYFGGLYVLAEVLIIPALPLTTTAGFLFGVPGGTAVVLISATIAAVISFQLGRTLLRKQIEGLLEENPKFRVIDKAIAKEGFKIILCLRLSPIFPFALSNYLYGATSVDFLEFMGGTLIGFFPGTLAYVYGGTVGKGLMDGGGMSFPWY---GNVAVIVFVAFLLKTVGDIATNAIEEIE 1059
            LYFG  YVLAE+L IPA PLT  +G+LFG   GTA  L SA IAA +SF +G+TLLR  +E +L+ENPKFR +D+AI KEGFK+++ LRLSP+FPFALSNYLYGA+S+ F  +  GT++GF PGT AYVYGG +GK L  GG  + PWY   G +AVIV    L+K +GD+AT+ I+ +E
Sbjct:  167 LYFGIFYVLAEILAIPAFPLTAASGYLFGAFPGTATCLFSAAIAASVSFVIGKTLLRGYVEDVLDENPKFRSMDRAIEKEGFKLMVLLRLSPLFPFALSNYLYGASSIRFPSYFFGTILGFAPGTFAYVYGGVIGKELTVGGDSAQPWYVYAGGMAVIVG---LIKVIGDVATSVIDAME 343
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig12090.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0C0_9PHAE2.470e-9971.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZF34_9STRA7.340e-7062.69Snare associated Golgi protein-domain-containing p... [more]
A0A448YYH2_9STRA1.020e-6261.29Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7R9WRQ5_9STRA3.630e-6155.44Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S1FUG6_9STRA2.980e-6054.59Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7S4I716_9STRA5.850e-6055.56Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A7S1FUT1_9STRA1.730e-5854.59Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7S2K1V4_9STRA2.310e-5863.03Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A7S0CCP1_9STRA2.320e-5853.16Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
K0R4C6_THAOC1.070e-5558.33Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig12090contigA-nodosum_M_contig12090:2185..9687 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog159749.K0R4C6
PFAMsSNARE_assoc
Model size1736
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categorymitochondrion
Exons4
Evalue2.46e-60
EggNOG OGsCOG0398@1|root,KOG3140@2759|Eukaryota,2XF17@2836|Bacillariophyta
Ec32 ortholog descriptionTransmembrane protein Tvp38/TMEM64-like
Ec32 orthologEc-16_003750.1
DescriptionSNARE associated Golgi protein
Cds size783
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig12090.1.2prot_A-nodosum_M_contig12090.1.2Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig12090 2841..9390 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866635.9183078-UTR-A-nodosum_M_contig12090:2184..28401680866635.9183078-UTR-A-nodosum_M_contig12090:2184..2840Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig12090 2185..2840 -
1680866635.9909866-UTR-A-nodosum_M_contig12090:9390..96871680866635.9909866-UTR-A-nodosum_M_contig12090:9390..9687Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig12090 9391..9687 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866635.9512517-CDS-A-nodosum_M_contig12090:2840..29931680866635.9512517-CDS-A-nodosum_M_contig12090:2840..2993Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig12090 2841..2993 -
1680866635.9598417-CDS-A-nodosum_M_contig12090:3370..35991680866635.9598417-CDS-A-nodosum_M_contig12090:3370..3599Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig12090 3371..3599 -
1680866635.9711752-CDS-A-nodosum_M_contig12090:4213..45341680866635.9711752-CDS-A-nodosum_M_contig12090:4213..4534Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig12090 4214..4534 -
1680866635.9801245-CDS-A-nodosum_M_contig12090:9310..93901680866635.9801245-CDS-A-nodosum_M_contig12090:9310..9390Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig12090 9311..9390 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig12090.1.2

>prot_A-nodosum_M_contig12090.1.2 ID=prot_A-nodosum_M_contig12090.1.2|Name=mRNA_A-nodosum_M_contig12090.1.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=261bp
MKPARKSLATTVTRRVSDCRPGCTFYSLRDHTGDGTLASFDAISEIVKAG
PGAATAAVQGFLKSSIAKVEELGPLGPLYFGGLYVLAEVLIIPALPLTTT
AGFLFGVPGGTAVVLISATIAAVISFQLGRTLLRKQIEGLLEENPKFRVI
DKAIAKEGFKIILCLRLSPIFPFALSNYLYGATSVDFLEFMGGTLIGFFP
GTLAYVYGGTVGKGLMDGGGMSFPWYGNVAVIVFVAFLLKTVGDIATNAI
EEIEPGWRDD*
back to top

mRNA from alignment at A-nodosum_M_contig12090:2185..9687-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig12090.1.2 ID=mRNA_A-nodosum_M_contig12090.1.2|Name=mRNA_A-nodosum_M_contig12090.1.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=7503bp|location=Sequence derived from alignment at A-nodosum_M_contig12090:2185..9687- (Ascophyllum nodosum dioecious)
CAGGCCTCTCTGGGATCATGCATGCGCGTGCTTCACTCTGTCAGCCTGCT
TGATATCCCCACGGCCGAGGCATGAGCCCAGCGACGCTTTGCCGCCTTTG
GCTCCTCGATTGAGGCGCAACTTGGAGGGCCCGAATTTCGATTAACTCCG
ACGAGGTGTTTTCCAGAAACCAACTCTGAGAGGCAGTACAATCAAACGAG
CGTTCCATGACCGAGGTATATGGAGGTGTTGGGCGAGCCGCGTCGCGAGT
CGGGTGTTGGCGTCCCAATGTATCCCGGCTGATGTCGCTGGCGGAGGATG
AAACCGGCCCGGAAAAGTTTAGCTACAACCGTTACTCGGCGCGTTAGCGA
TTGCCGACCTGGGTGCACCTTCTACAGGTGAGCAAGATGTATGTATGTAT
GTGTGTTACAGGGTGTCCCTATTTCCCATTCATTCTGGACCATTAAGTTC
GTTGGACGTACCAGCAGGTCACAGGAGGAGTCACACAGGATTTTTTCATC
CACCTTCTTTCTGCGGTGCGTGCCCTTAATTTTTTCTCGCGAAGATTTAG
CCATTCCTTTCCTCGTCGACCGTGAAGTCGAATTTGTGTACTAACGATTT
AATCGTTCTCCACCGTTAGGCATTTTTATTTTTATTTTTTTTATGAGAAA
ATCCCGTTTACCGGGATCGAACTCATATCCCAACGGTTGAAGGTTACGAG
GTTACCTCGACTGAGTAGGGCGACCGGCTGATATGGTCGTTACATCTAGC
AAGAGTATGGACTAACCGGGTAAGGTTGTCAATCCTGCTCGTGGTCAGCT
GAACAGCGAAAAATGAACATTTCCCACCCCAATTCGCGCCTGAGAATTTG
GTCTCGCGAGACGTGCAGTTGGCAGTCCCGTCAGCGTCAGCCTGCCCATC
TTAATACTCGGCTGAATCTGGTGCAACTTACGGGATTCCTCCCCGAGTTC
GCGCGGCGTCCATTTATTGATTTAAACCGCCATACGCCATCGGCCAGGTC
CTGAGTTTATCGGGTTACGCACTTGCGTACCGATGGGGTTCCCTGCCAGA
GTCCGCCGGCGCAATAGCAGCAACCCTCAAGGTAGTTCCAAACGAATGCT
TCGGGCAGGTCACCATGGACCAACTTCACAAGCGCCTCTTTTCCCACACC
CACTATTGGTATGGTGGGCATATTGAAGTACCGGCGTAACATGCGATACG
TCAATGCAGGCTTCCAACAAGGTCTGAGTGACTTGGAGTTTGCTCTCGTA
TAAAGGTGTACAGAACCAGACAGTCCCAGCAATCCCAAAACTGACCGGCG
TCTACATCCACCGCTTGAAAACTAATGGAACCATTTTATTAGAGAAAATC
TCCAAACAAGGGCAGTAAAAGTGATATTTTATTTCACACAAAAACTTGGT
AGGAGATCTCGGTTTTGGAATTATTTTCATGGACTTCTTCTAAACTTGTC
TTCGAAAGCAGCGTTGTCTTTTATTTGAATGAGGGCAAGGCCAGTCGAAC
CTGTTCTTGTTTCCACACTCTCGACTCGTTGACGTCGTTTCTCACATCCA
GCTTACGGATGTTCTTTGCCAACCCGAGAGATCGTACCTACTACTTACGC
ATGGCCAATCCCGCTTGTGGTTTGCTGAACAGGGAAAACATAAAGTAACT
GACTGGGGGATGCTCAGAAGGTCTAGGTGCATTCAGATTTTTCTTTAAAT
ACTTACTGATGGTTACCTTACCACGGAAAACATGTCTCTCTCTCTAGTGG
TCTACAGAAATACCGCTGCTGATACGGAGCTAAACACGAGGTTTCTTCAT
GGTACCATTTTTTTTAAGGTCCTTTTTTTTATCGCCGTAATGTTAAAGAG
TAAATCACCACAAACGTGGTACGCATCCCGGACGGATACGCGGCTCCAGA
TATTTACGGTACCGCATCTGTCTAAGCACGGTTCCAAGACGGTACGCATC
CGTGCAGGAACTCTTCGGTGCCTTCGATACTTTCAACATGTCCACTTTCT
ACCAGTAGTGGGTGTGGGAAAGAGAGGCGAATTGGTCCATGGTGACCTGC
CAAGGCAGCACCCGTTACTGGAACTACCTTGAGGACTACTGGCCCTGTGC
CGGCGGACTCTCGGCAGTGAACGCCATCGGTACGCATTTACGTGACCCGA
TAAACTCGGGACTGGCCCGATGGCGTATGGCGGTTTAAATAAATAAATGG
ATGCCGCCACGGAAATCGGGAGGAATCCCGTGAGTAAACATCAGATTCAG
CCTGAGTATGAAGATGAGCAGACTGACGCGGGACGGGACTGCCGAACCCG
TCTCGCGAGACCAAATTCTCAGGCGCGAACGGGGCCAGGGAAATGTTCAT
TTTTCCTGTTCAGCTGACCACGAGCAGGATTGACAACCTTATCCACTTTC
TACCAATAGTGGGTGTGGGAAAGAGAGGCGCATATTAATTGGTCCATGGT
GACCTGCCAAGGCAGCACCCGTTACTGGAACTACCTTGAGGACTACTGGC
CCTGTGCCGGCGGACTCTCGGCAGTGAACGCCATCGGTACGCATTTACGT
GGCCCGATAAACTCGGGACTGGCCCGATGGCGTATAGCGGTTTAAATAAA
TAAATGGATGCCGCTACGGAAATCGGGAGGAATCCCGTGAGTAAGCATCA
GATTCAGCCTGAGTATGAAGATGAACAGACTGACGCGGGACGGGACTGCC
GAACCCGTCTCGCGAGACCAAATTCTCAGGCGCGAACGGGGACAGGGAAA
TGTTCATTTTTCCTGTTCAGCTGACCACGAGCAGGATTGACAACCTTACC
CGGTTGATCCATACTCTGCTATAGGTGATGACCATGCATACTTCTGAAAC
ATAGATACACAACTATTTCTACAGCGGTTGAACACTAGGAGGGTGTTCTC
AGGCACTCTTTTGTTTGATTTTTTTCTTTCATCGTATTAATCGAGTGGAT
GCGCTGTCAACTCGATCAAGTTGATCTAGGCTAACGAAGCACAGCCTGTC
GGGAGGACGCAGCTTTTATCTACAGGTCGATCTCGACAGCTTTGTCCGCG
GCTGCACTCTGCGCCAACTGTATGCCTTACATGCAGTTCTCGCGTCGCTC
CTCCTGCGCCTTTCTGGCGGCTTCTTTGTACTCCTTTGACTTCCGGGACG
AAATTCAGCCGTAAGAACATCATCTGCTCAACCTCGTTCGTGGGTTGGCT
GAGAAGCGAACGGACCGAAAAGTTGCGCTCAGCTTTGCATTTAGTGACTT
AAACCCCTTACTGCAAAGACGCGCATCGAGTGCAAAGAGTACATATCTTG
CTGCAGATACCACGTTGCCAGTGCCCTCTACCCGCGTTAGGGATGTATTT
CTGAGTCAAAAAAGTAGCAGCTGAAATCGCGGACATACAACCTCACCCCT
ACCTAATGTACCGCTGGCAATTCCTTGCTGAGGAGGAACCCGGGGAGTAA
ATACTCTGCGTTCCGCCCTGCTCCCGATCCCGGCTGTTTCGCCCTAGTCG
TAGCTCTCTTCATTCTGCCTCGTTGCGCACACCTTCGTCCCAACGTCATG
GCTCGAAATCCACCCGTATACCAAACACCCGGCATCGCTCTCCACGCCGT
CAACCACCCGTCCTCTCTTTACTATTTCTCAGATTCCCGAATACATTTCG
CTTTTGACGATCGCCCGTTCTCTTTTTACTCATCCTCGTGATTCCTGGAC
ACATTCACTTTGACGGATCGTCCGTCGCTCGTTCACATGAAAATAGATGG
AGGGGCTTCAGGGAGAAAGTAATGTTTTGACACGCAACGTCATTATTTTG
TGTCTGAGGACAAAAAATATTTGTTCGTTCTCATGGTACCATTTTTCCCT
GACTGTGGGATGCCCAGAAGGTCTAGATGCGTTCGGCTTTTCTTTAAACA
ACACTCAGAAGGTCTGAGGCGCGTTCTGTTTTTTTAAACAGCAGTGTACC
GTTTTTTTGTTTTTGTTGTTAATGGAAGAATCAAATAACACTACGAGTAT
GCAGAAGAGAGGTACGATCGAAAGAATGAATGTTTCCATGCAGCTCCGAA
GTTTTTTTCTCCAGCGCATCTTCCCCATGCCAAAAGTTTAGAGATCCAGA
AAGAAAGGAAATTCTACTCACCAGTCGGCGTACACTGTCTTGAATGGAAG
AATCAAATAACACGAGTATGCAGAAGAGGTTGCGACTGAAGGAATGTGTT
TCCCAGCCGGGAAGTTTTCTCAGCGCATCTTCCATGCCAAAATTTTAGAG
ATCCAGAAAGAAAGAAATCTACTCTGGTCGGCGTACACTGTCTTGCCGTT
TTTAGGCGGTTAGGGTGAGTTTTTAGGCGGGGTATCCAATGCACGGTGGG
GAAGGGAGATATTGAGGCCTCGTGGTGCGACTTGCCGTTGGGTATGCGAA
AAAGTATTATAGTGATGTTGCAGGTAGACAACCTTGGCGCAGCTTTTCCA
AACTCCGTGTCGAAGGTAATAGAGGTGACTCTGTAGGAGGTGCCCACTAT
ACTCCGCATTTGAACGATTCTTGCTGGACGGGCTGCAGTTACGGTTTCGT
TAAGCATGGATCTTGAATGAAATACTGTAACCTCCCTTCCCCGCTCAGAT
TGAAGAGTCGTTTTCACGGAAGTGTTCTACCATGCAAAGTTGTAAGCGGA
ATATTCTACCACATCGGTCGATAGCAGTTGCCGATGATTCGTCGCCATCA
CGATACCCTTTCCATGAAGTACCTCACGTTGCAATTCTAGTAAGTCGTAG
CGACGTTTTTGATAGGCTGCGGGCTGATTTTAACGTTTAGTTTCAGGATG
TGAAGCCATTGCTCTACTCATACTCTTGCGAAATATTGTACTACTATTTA
ATAGGTACATTGCAGGGAGCCACCTTGCAAAACCTTAAAAAAAAAAAAAA
AGCACCACGCTTTACAATTGCGAGACCACGCACTCCAGACTGGACGTTGA
CATCGAAATCTAACCCGAGACAAGCCAAAAGGACGTTCGTTTGAGCACCA
TGAAGTGCCGTCGAGCACAAGTGTTTATACTTCTGTCGTGAAGTAGCTCA
TGATGTGTAGTACCGAATAGGTTCAAGGATCCCTTTTGCTGGCCTTACCC
TATTCCCAGCCCTCATTGTCTCTAACTACGATCTCCGTGAAACCACGCAT
AAGCCTTCGAGACCACACGGGCGATGGCACGCTAGCGTCCTTCGACGCGA
TCTCGGAAATAGTCAAGGCCGGTCCAGGCGCGGCGACGGCAGCCGTGCAG
GGTTTTCTCAAGAGCAGCATTGCGAAGGTGGAGGAGCTTGGTCCTCTGGG
CCCCTTGTACTTCGGGGGGCTGTACGTTCTCGCCGAGGTGCTCATAATTC
CCGCCTTGCCCCTGACGACGACGGCGGGATTCCTCTTCGGCGTGCCTGGC
GGGACGGCGGTAGTGCTGATCAGCGCGACAATCGCCGCCGTGATCTCGTT
CCAGCTGGGGAGGACGTTGTTGAGGTGAGGTAAATGAGGAGGTTTCTATG
CGTGTACCGTTGAAGTCGCTACGCGGATGTTGCGTGACGTTCGAGCTGTT
GGGGTACAGCGTCTCGAACTCCAATCGAACGATAGCGGGAGCGTGTTCAT
CTTCCTGTTTTTATTCGCTTTCGCCGGATCATTCAGGCTATTGACACGAG
ACTGCGGCAGATATAAAGGGTGAAGTCGATGGATCGCTTATACAGCTTTT
TGTGTCTGTGCAGGGCCGTGTCATAAAAGCGTCAAGGCCATTATGGTTGA
CGCCTTGCGAAAATTCGAAGAAGGCCTTGTTTGTCGAGGTTGGTTGTCTT
TTTGCATCTCGACGTGTAGCAAAGGGCCTCCCACAATCGGCGCCGAACTG
AGAAGATCGACCGAGAGCGCACAGAAGAGGGCAAGGGTATTGACACTTTT
GCCGCTGGAGTGGTTGCATAGATGCATCCGGTCGGAGCTCAAACGGAGTC
CCGCCTGCTGCAGCGCGCCAACCAAAGTACTTTGAACCACTATTAATATT
TAATAACCGAAGCTTGAGCGGGCTTTCCTGTCTTTGCTGTCTGCCGCGAA
AGCAGTTCCTCACATTTCGTAATCGCCACATCCCGCAGGAAGCAAATCGA
AGGGCTCTTGGAAGAGAATCCGAAGTTCCGTGTGATAGATAAAGCTATCG
CCAAGGAAGGATTCAAGATTATCCTCTGCCTCAGACTCAGCCCGATTTTT
CCCTTCGCGCTGAGCAACTACCTGTATGGGGCGACCTCCGTGGATTTCCT
CGAATTCATGGGGGGTACCTTGATCGGCTTCTTTCCGGGAACCCTGGCCT
ACGTCTACGGGGGAACCGTGAGTATCGGACTCATTTCAGATGTCTGTCAA
ACGTTGAGGCTATGTGTGGTAGCATGGAGACGTGGGAGCTGGGCAGGACT
CTACACCGGCGTGCCAACGGCAACATATTTCGTAGGTTTTGTCTTCTACT
TCTGGGTTGATGACCTCCCTGACGATGATTTTCATTTCCTGAGCTAGGTG
AAATATCCAATGTTGTGGGCGAACGGGCACGGGACGTGCCTGAGGTAGAG
ATTACGTCACTTGCTAGGATGCCCTTCATGGCCGACCCCAATCAAGGCTT
CCCGAGCGCTCAACTTCAAAGACTCTTGCGATAGCCAGCGCGCCGAACTC
AATCATGCTCTTCGTTGCATTCCTTTTCACGTCTCCTTGGTCAGGTCGGT
AAGGGGTTAATGGACGGGGGGGGCATGTCATTCCCTTGGTACGGGAACGT
GGCGGTGATAGTGTTCGTTGCGTTCCTGCTCAAGACAGTGGGCGACATCG
CCACTAACGCGATCGAAGAGATTGAACCAGGCTGGAGAGATGACTAGGCA
AAGAAAGGAAGAAAAAAGGGTCTGGTTGGTCAGCAGCGAAATTGTGCCCG
TGGAATCTCTTCCATTTTGTCTTGTGGCATGTGCACGATGCGCATCCGAT
GCGGTCTCCGAAACGCAAAGGGTACGGTTCGAGAAAGGAAAGGAGACTTT
CTTGACAAAAGCCGACGCATTTTGGATCCGTGCGCGGCTGAAAAAGGGGT
AAGAATACTGGGTCAGAGCCTGGCGGTCGCCTGTCAAGATACCCGCCATA
GTTCAGCGGGGCAAGTGTAGGCAAGCAAAATAGAGTATTTTGTCTCAAAC
TGGATGGGCATGCATTACTGTGTTCTCTTTTTTAACCGGGGAGCATATGA
TTGCGGCGGCGTTAGAGAGCGGCATATTGTGATTGAGAGCTTTTGCTTTC
GCGCTGACGACCTTGGCGCTGACATACTCCCTTGCTTTTTTATAAATATC
GTAGACTCATACCATATTTCTTGTACATCCCGACGTACTGTGTAACCGAA
TCTCATTATTCCAGTAATTACCGGTAGCTCTTATCACGTGAAGTCTGCGT
CACTATACCCTCAGGGTGCAATCAAATACCTCCTCCCTGGCGGTGTGTAA
GGGTGCACAAATGGAGTGATTGAACACCAGGGTAGGAGGCGGCGAGATCC
CGG
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig12090:2185..9687-

>mRNA_A-nodosum_M_contig12090.1.2 ID=mRNA_A-nodosum_M_contig12090.1.2|Name=mRNA_A-nodosum_M_contig12090.1.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=783bp|location=Sequence derived from alignment at A-nodosum_M_contig12090:2185..9687- (Ascophyllum nodosum dioecious)
ATGAAACCGGCCCGGAAAAGTTTAGCTACAACCGTTACTCGGCGCGTTAG
CGATTGCCGACCTGGGTGCACCTTCTACAGCCTTCGAGACCACACGGGCG
ATGGCACGCTAGCGTCCTTCGACGCGATCTCGGAAATAGTCAAGGCCGGT
CCAGGCGCGGCGACGGCAGCCGTGCAGGGTTTTCTCAAGAGCAGCATTGC
GAAGGTGGAGGAGCTTGGTCCTCTGGGCCCCTTGTACTTCGGGGGGCTGT
ACGTTCTCGCCGAGGTGCTCATAATTCCCGCCTTGCCCCTGACGACGACG
GCGGGATTCCTCTTCGGCGTGCCTGGCGGGACGGCGGTAGTGCTGATCAG
CGCGACAATCGCCGCCGTGATCTCGTTCCAGCTGGGGAGGACGTTGTTGA
GGAAGCAAATCGAAGGGCTCTTGGAAGAGAATCCGAAGTTCCGTGTGATA
GATAAAGCTATCGCCAAGGAAGGATTCAAGATTATCCTCTGCCTCAGACT
CAGCCCGATTTTTCCCTTCGCGCTGAGCAACTACCTGTATGGGGCGACCT
CCGTGGATTTCCTCGAATTCATGGGGGGTACCTTGATCGGCTTCTTTCCG
GGAACCCTGGCCTACGTCTACGGGGGAACCGTCGGTAAGGGGTTAATGGA
CGGGGGGGGCATGTCATTCCCTTGGTACGGGAACGTGGCGGTGATAGTGT
TCGTTGCGTTCCTGCTCAAGACAGTGGGCGACATCGCCACTAACGCGATC
GAAGAGATTGAACCAGGCTGGAGAGATGACTAG
back to top