mRNA_A-nodosum_M_contig12083.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig12083.1.1
Unique NamemRNA_A-nodosum_M_contig12083.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig12083.1.1 vs. uniprot
Match: A0A6H5L3E5_9PHAE (Bromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3E5_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 3.730e-16
Identity = 46/87 (52.87%), Postives = 54/87 (62.07%), Query Frame = 1 
Query:    1 MRLNNEMPEFVVMASKYKKAVENSMESRCVYACPPRRRQVRSSRVHEGMLVGVKQMDKDTGIMPWESLQVEWDDETDTNTVSPWEVE 261
            MRL+NEMPEFVV+ASKY +A+  +  S                R+ EG LVGVK  D  T +MPWE L VEWDDE   NTV+PWEVE
Sbjct:  650 MRLSNEMPEFVVVASKYDEAMTFNWRSEMHIQMAFMEEPGEPPRIFEGTLVGVKPKDPRTQMMPWECLIVEWDDEAGMNTVNPWEVE 736
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BLAST of mRNA_A-nodosum_M_contig12083.1.1 vs. uniprot
Match: D7G6R7_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6R7_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 5.250e-16
Identity = 45/87 (51.72%), Postives = 53/87 (60.92%), Query Frame = 1 
Query:    1 MRLNNEMPEFVVMASKYKKAVENSMESRCVYACPPRRRQVRSSRVHEGMLVGVKQMDKDTGIMPWESLQVEWDDETDTNTVSPWEVE 261
            MRL+NEMPEFVV+ SKY +A+  +  S                R+ EG LVGVK  D  T +MPWE L VEWDDE   NTV+PWEVE
Sbjct: 2063 MRLSNEMPEFVVVTSKYDEAMTFNWRSEMHIQMAFMEEPGEPPRIFEGTLVGVKPKDPRTQMMPWECLMVEWDDEAGMNTVNPWEVE 2149
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig12083.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L3E5_9PHAE3.730e-1652.87Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
D7G6R7_ECTSI5.250e-1651.72Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig12083contigA-nodosum_M_contig12083:1441..1918 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G6R7
PFAMsAuxin_resp,Bromodomain,DNMT1-RFD,DUF3591,WSD
Model size264
Max annot lvl2759|Eukaryota
KEGG koko:K03125
KEGG Pathwayko03022,map03022
Hectar predicted targeting categoryother localisation
Exons2
Evalue8.61e-17
EggNOG OGsCOG5179@1|root,KOG0008@2759|Eukaryota
Descriptionnegative regulation of protein autoubiquitination
Cds size264
COG categoryK
BRITEko00000,ko00001,ko01001,ko03021,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866634.1934865-CDS-A-nodosum_M_contig12083:1440..15811680866634.1934865-CDS-A-nodosum_M_contig12083:1440..1581Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig12083 1441..1581 -
1680866634.271789-CDS-A-nodosum_M_contig12083:1795..19181680866634.271789-CDS-A-nodosum_M_contig12083:1795..1918Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig12083 1796..1918 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig12083.1.1prot_A-nodosum_M_contig12083.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig12083 1441..1918 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig12083.1.1

>prot_A-nodosum_M_contig12083.1.1 ID=prot_A-nodosum_M_contig12083.1.1|Name=mRNA_A-nodosum_M_contig12083.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=88bp
MRLNNEMPEFVVMASKYKKAVENSMESRCVYACPPRRRQVRSSRVHEGML
VGVKQMDKDTGIMPWESLQVEWDDETDTNTVSPWEVEL
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mRNA from alignment at A-nodosum_M_contig12083:1441..1918-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig12083.1.1 ID=mRNA_A-nodosum_M_contig12083.1.1|Name=mRNA_A-nodosum_M_contig12083.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=478bp|location=Sequence derived from alignment at A-nodosum_M_contig12083:1441..1918- (Ascophyllum nodosum dioecious)
ATGCGACTTAACAATGAAATGCCGGAGTTCGTCGTCATGGCCTCGAAGTA
CAAAAAGGCCGTTGAAAACTCAATGGAATCGAGATGCGTATACGCATGTC
CTCCTCGGAGGAGACAGGTACGGGTAATGTGGTTGACAAAGAGCGAGCAC
CATAACGCACCGATACCTGTTTTGTCAGAATCTGCGGCTCTAGGAGGAAC
GGTTGGCACAGTTAGCGATTATTCCAGAGCTTGTTTGCATTCGTTTCTGT
CTGCAGGAGACAAAATATATTTGCGTCAAACGTCGCCCCCGCTTCTTTGC
CCTCAATGCTGAACTGCTTGCTGCGACCGCAGGGGAGTCTTCCCGAGTGC
ATGAGGGCATGCTGGTGGGAGTTAAGCAGATGGACAAGGACACGGGGATA
ATGCCGTGGGAAAGTCTTCAGGTAGAATGGGACGACGAGACAGATACCAA
TACGGTAAGCCCGTGGGAGGTAGAGCTG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig12083:1441..1918-

>mRNA_A-nodosum_M_contig12083.1.1 ID=mRNA_A-nodosum_M_contig12083.1.1|Name=mRNA_A-nodosum_M_contig12083.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=264bp|location=Sequence derived from alignment at A-nodosum_M_contig12083:1441..1918- (Ascophyllum nodosum dioecious)
ATGCGACTTAACAATGAAATGCCGGAGTTCGTCGTCATGGCCTCGAAGTA
CAAAAAGGCCGTTGAAAACTCAATGGAATCGAGATGCGTATACGCATGTC
CTCCTCGGAGGAGACAGGTACGGTCTTCCCGAGTGCATGAGGGCATGCTG
GTGGGAGTTAAGCAGATGGACAAGGACACGGGGATAATGCCGTGGGAAAG
TCTTCAGGTAGAATGGGACGACGAGACAGATACCAATACGGTAAGCCCGT
GGGAGGTAGAGCTG
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