mRNA_A-nodosum_M_contig1208.5.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1208.5.1 vs. uniprot
Match: D7FNR9_ECTSI (Lactoylglutathione lyase family protein / glyoxalase I family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNR9_ECTSI) HSP 1 Score: 193 bits (490), Expect = 5.360e-53 Identity = 92/119 (77.31%), Postives = 103/119 (86.55%), Query Frame = 2
Query: 2150 AAVMLTHVNY**EFYLNVLGFEDDSSLRPDNKLPFDGAFVRAGATQIHLMELPNPDPIDGRPEHGGRDRHVAFTIQDLEPLIGRLNKAGVIYTMSKSGRAALFCRDLDGNAFEFIQQAI 2506
A V+++ EFY+NV GFED+S LRP +LPFDGAFVRAGATQ+HLMELPNPDP+DGRPEHGGRDRHVAF+I DL PL GRL+ AGV YTMSKSGRAALFCRDLDGNAFEFIQQA+
Sbjct: 51 AGVLVSDTKASKEFYVNVFGFEDESPLRP--QLPFDGAFVRAGATQVHLMELPNPDPVDGRPEHGGRDRHVAFSIADLRPLKGRLDSAGVTYTMSKSGRAALFCRDLDGNAFEFIQQAL 167
BLAST of mRNA_A-nodosum_M_contig1208.5.1 vs. uniprot
Match: A0A4D9CZQ2_9STRA (VOC domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CZQ2_9STRA) HSP 1 Score: 164 bits (415), Expect = 8.480e-43 Identity = 76/117 (64.96%), Postives = 93/117 (79.49%), Query Frame = 2
Query: 2150 AAVMLTHVNY**EFYLNVLGFEDDSSLRPDNKLPFDGAFVRAGATQIHLMELPNPDPIDGRPEHGGRDRHVAFTIQDLEPLIGRLNKAGVIYTMSKSGRAALFCRDLDGNAFEFIQQ 2500
A ++++ FYL+VLGFEDD+ LRP LPF GAFVR GA QIHLMELPNPDP GRPEHGGRDRHVAFT+ +++PL+ RL + GV +TMSKSGR A+FCRDLDGNA EF+++
Sbjct: 47 AGILVSDTQSSMRFYLDVLGFEDDTHLRPST-LPFPGAFVRGGAQQIHLMELPNPDPTRGRPEHGGRDRHVAFTVDNIDPLMARLTEEGVPFTMSKSGRRAVFCRDLDGNALEFMEE 162
BLAST of mRNA_A-nodosum_M_contig1208.5.1 vs. uniprot
Match: A0A7S3RP39_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3RP39_9SPIT) HSP 1 Score: 161 bits (407), Expect = 6.910e-42 Identity = 85/152 (55.92%), Postives = 101/152 (66.45%), Query Frame = 2
Query: 2075 TSDALQESPSQMSRCCHAYPR*LCPA-----------AVMLTHVNY**EFYLNVLGFEDDSSLRPDNKLPFDGAFVRAGATQIHLMELPNPDPIDGRPEHGGRDRHVAFTIQDLEPLIGRLNKAGVIYTMSKSGRAALFCRDLDGNAFEFIQ 2497
T+ + E + SR PR L PA V++ FY VLG ED++ LRP+ LPF GAFVRAG QIH+MELPNPDP+DGRPEHGGRDRH+A TI+DLEPL +L V+YTMSKSGRAALFCRDLDGNA EF++
Sbjct: 10 TALSSMEMLAPTSRPAVGVPRTLAPAMSIQYGGVAHAGVLVADTQRALRFYTAVLGMEDETHLRPN--LPFPGAFVRAGQQQIHIMELPNPDPVDGRPEHGGRDRHLALTIKDLEPLKKKLQAEDVVYTMSKSGRAALFCRDLDGNAMEFME 159
BLAST of mRNA_A-nodosum_M_contig1208.5.1 vs. uniprot
Match: A0A5J4YUU9_PORPP (Protein YwkD n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YUU9_PORPP) HSP 1 Score: 157 bits (396), Expect = 1.960e-40 Identity = 73/104 (70.19%), Postives = 84/104 (80.77%), Query Frame = 2
Query: 2186 EFYLNVLGFEDDSSLRPDNKLPFDGAFVRAGATQIHLMELPNPDPIDGRPEHGGRDRHVAFTIQDLEPLIGRLNKAGVIYTMSKSGRAALFCRDLDGNAFEFIQ 2497
EFY+NVLG DD++ RP+ L F GAFVRAG QIHLMELPNPD DGRPEHGGRD+HVA ++D++PL+ LN GV YTMSKSGR ALFCRDLDGNA EFI+
Sbjct: 58 EFYVNVLGMSDDTATRPN--LAFGGAFVRAGEHQIHLMELPNPDAKDGRPEHGGRDKHVALNVEDIDPLVESLNANGVFYTMSKSGRRALFCRDLDGNALEFIE 159
BLAST of mRNA_A-nodosum_M_contig1208.5.1 vs. uniprot
Match: A0A7S2RGE4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RGE4_9STRA) HSP 1 Score: 154 bits (389), Expect = 2.340e-39 Identity = 72/103 (69.90%), Postives = 85/103 (82.52%), Query Frame = 2
Query: 2189 FYLNVLGFEDDSSLRPDNKLPFDGAFVRAGATQIHLMELPNPDPIDGRPEHGGRDRHVAFTIQDLEPLIGRLNKAGVIYTMSKSGRAALFCRDLDGNAFEFIQ 2497
+Y +VLGF D+S LRP KLP+ GAF+RAG QIHLM+LPNPDPIDGRPEHGGRDRHVA ++ DL+PLI RLN + +TMSKSGR ALFCRD DGNA EF++
Sbjct: 69 WYTSVLGFLDESHLRP-TKLPYPGAFLRAGDQQIHLMQLPNPDPIDGRPEHGGRDRHVALSVVDLDPLISRLNDQEIPFTMSKSGRRALFCRDPDGNAMEFME 170
BLAST of mRNA_A-nodosum_M_contig1208.5.1 vs. uniprot
Match: A0A835Z9T1_9STRA (Lactoylglutathione lyase family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9T1_9STRA) HSP 1 Score: 151 bits (382), Expect = 1.860e-38 Identity = 73/119 (61.34%), Postives = 88/119 (73.95%), Query Frame = 2
Query: 2150 AAVMLTHVNY**EFYLNVLGFEDDSSLRPDNKLPFDGAFVRAGATQIHLMELPNPDPIDGRPEHGGRDRHVAFTIQDLEPLIGRLNKAGVIYTMSKSGRAALFCRDLDGNAFEFIQQAI 2506
A V+ ++ FY VLGF+D++ LRP+ LPF GAFVRAG QIHLMEL NPDP+DGRPEHGGRDRH+AFTI+ L PL L + G YT SKSGRAA+F RD DGNAFEF++ +
Sbjct: 52 AGVLCSNTEASLAFYTEVLGFQDETELRPN--LPFKGAFVRAGGQQIHLMELENPDPVDGRPEHGGRDRHLAFTIRSLAPLEAALKRHGRTYTRSKSGRAAIFTRDPDGNAFEFLEADV 168
BLAST of mRNA_A-nodosum_M_contig1208.5.1 vs. uniprot
Match: A0A7S1XHW6_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1XHW6_9RHOD) HSP 1 Score: 149 bits (375), Expect = 1.050e-37 Identity = 67/104 (64.42%), Postives = 85/104 (81.73%), Query Frame = 2
Query: 2189 FYLNVLGFEDDSSLRPDNKLPFDGAFVRAGATQIHLMELPNPDPIDGRPEHGGRDRHVAFTIQDLEPLIGRLNKAGVIYTMSKSGRAALFCRDLDGNAFEFIQQ 2500
FY +VLG +DD+++RP+ L F GAFVRAG+ QIHLMELPNPDP GRP+HGGRD+HVA T+ +++PL+ L + GV YTMSKSGR ALFCRD+D NA EFI++
Sbjct: 50 FYCDVLGMQDDTAVRPE--LAFGGAFVRAGSHQIHLMELPNPDPKTGRPQHGGRDKHVALTVDNIDPLVESLERNGVAYTMSKSGRRALFCRDVDSNALEFIER 151
BLAST of mRNA_A-nodosum_M_contig1208.5.1 vs. uniprot
Match: A0A7S0VYU0_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VYU0_9CRYP) HSP 1 Score: 148 bits (373), Expect = 3.530e-37 Identity = 71/104 (68.27%), Postives = 83/104 (79.81%), Query Frame = 2
Query: 2186 EFYLNVLGFEDDSSLRPDNKLPFDGAFVRAGATQIHLMELPNPDPIDGRPEHGGRDRHVAFTIQDLEPLIGRLNKAGVIYTMSKSGRAALFCRDLDGNAFEFIQ 2497
EFY NVLG +D S LRP+ LP+DGAF+ GA QIHLM+LP+PDP +GRPEHGGRDRH+A TIQDL+PL G L + GV YTMSKSGR ALFCRD NA EF++
Sbjct: 67 EFYTNVLGMKDVSELRPN--LPYDGAFLECGANQIHLMKLPDPDPREGRPEHGGRDRHLAVTIQDLDPLEGSLLEHGVAYTMSKSGRRALFCRDPYMNAIEFVE 168
BLAST of mRNA_A-nodosum_M_contig1208.5.1 vs. uniprot
Match: A0A8J6C8W0_DIALT (VOC domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C8W0_DIALT) HSP 1 Score: 144 bits (364), Expect = 5.220e-36 Identity = 67/104 (64.42%), Postives = 79/104 (75.96%), Query Frame = 2
Query: 2186 EFYLNVLGFEDDSSLRPDNKLPFDGAFVRAGATQIHLMELPNPDPIDGRPEHGGRDRHVAFTIQDLEPLIGRLNKAGVIYTMSKSGRAALFCRDLDGNAFEFIQ 2497
+FY N+LG DD++ RP LPF GAFVR GA Q+HLMELPNPDPIDGRP HGGRDRH+A T+ +EPL L+ G +TMS SGR ALFCRD DGNA EF++
Sbjct: 61 DFYTNILGMGDDTAHRPST-LPFAGAFVRCGAHQLHLMELPNPDPIDGRPAHGGRDRHIAITVASIEPLRESLDAVGWAHTMSMSGRRALFCRDPDGNALEFME 163
BLAST of mRNA_A-nodosum_M_contig1208.5.1 vs. uniprot
Match: A0A2V3IT82_9FLOR (VOC domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IT82_9FLOR) HSP 1 Score: 144 bits (362), Expect = 8.320e-36 Identity = 70/116 (60.34%), Postives = 85/116 (73.28%), Query Frame = 2
Query: 2150 AAVMLTHVNY**EFYLNVLGFEDDSSLRPDNKLPFDGAFVRAGATQIHLMELPNPDPIDGRPEHGGRDRHVAFTIQDLEPLIGRLNKAGVIYTMSKSGRAALFCRDLDGNAFEFIQ 2497
A V++ FY+ V G DD LR + KLPF+GAF+RAGA+QIHLMELP+PDP++GRPEHGGRDRHVA T+ DL+PLI L + +T SKSGR ALF RDLD NA EFI+
Sbjct: 47 AGVLVRDTQVAKRFYMAVFGMADDDHLR-NPKLPFNGAFLRAGASQIHLMELPSPDPLEGRPEHGGRDRHVAVTVNDLQPLIASLQRHHRPFTFSKSGRRALFTRDLDSNAIEFIE 161 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1208.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1208.5.1 >prot_A-nodosum_M_contig1208.5.1 ID=prot_A-nodosum_M_contig1208.5.1|Name=mRNA_A-nodosum_M_contig1208.5.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=71bp MELPNPDPIDGRPEHGGRDRHVAFTIQDLEPLIGRLNKAGVIYTMSKSGRback to top mRNA from alignment at A-nodosum_M_contig1208:27785..32974- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1208.5.1 ID=mRNA_A-nodosum_M_contig1208.5.1|Name=mRNA_A-nodosum_M_contig1208.5.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=5190bp|location=Sequence derived from alignment at A-nodosum_M_contig1208:27785..32974- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1208:27785..32974- >mRNA_A-nodosum_M_contig1208.5.1 ID=mRNA_A-nodosum_M_contig1208.5.1|Name=mRNA_A-nodosum_M_contig1208.5.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=213bp|location=Sequence derived from alignment at A-nodosum_M_contig1208:27785..32974- (Ascophyllum nodosum dioecious)back to top |