mRNA_A-nodosum_M_contig12011.7.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig12011.7.1
Unique NamemRNA_A-nodosum_M_contig12011.7.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig12011.7.1 vs. uniprot
Match: A0A6H5L6P2_9PHAE (AB hydrolase-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6P2_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 7.460e-10
Identity = 27/32 (84.38%), Postives = 29/32 (90.62%), Query Frame = 1 
Query:    1 CDVFLFNYRGYGRSGGKASPSGITKDVREVST 96
            CDVFLFNYRGYGRSGGKASP+ I KDVRE+ T
Sbjct:  520 CDVFLFNYRGYGRSGGKASPANINKDVREIVT 551
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig12011.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L6P2_9PHAE7.460e-1084.38AB hydrolase-1 domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig12011contigA-nodosum_M_contig12011:7786..9768 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size163
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size162
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866628.929995-CDS-A-nodosum_M_contig12011:7785..78721680866628.929995-CDS-A-nodosum_M_contig12011:7785..7872Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig12011 7786..7872 +
1680866628.9396508-CDS-A-nodosum_M_contig12011:9692..97671680866628.9396508-CDS-A-nodosum_M_contig12011:9692..9767Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig12011 9693..9767 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig12011.7.1prot_A-nodosum_M_contig12011.7.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig12011 7786..9767 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig12011.7.1

>prot_A-nodosum_M_contig12011.7.1 ID=prot_A-nodosum_M_contig12011.7.1|Name=mRNA_A-nodosum_M_contig12011.7.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=54bp
CDVFLFNYRGYGRSGGKASPSGITKDVREVSTPGTNPFRSSPRVEAMHGV
IRSL
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mRNA from alignment at A-nodosum_M_contig12011:7786..9768+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig12011.7.1 ID=mRNA_A-nodosum_M_contig12011.7.1|Name=mRNA_A-nodosum_M_contig12011.7.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1983bp|location=Sequence derived from alignment at A-nodosum_M_contig12011:7786..9768+ (Ascophyllum nodosum dioecious)
TGCGACGTGTTTCTGTTCAACTACCGAGGCTACGGCCGCTCTGGCGGGAA
GGCTTCGCCGTCCGGTATCACCAAGGACGTACGGGAGGTGAATAAGTGTG
CCGTCCCCCCCCCCCCCCGCTACCCTTAAAAAAGAAACGCGTCAAAAGTA
AATATATATTTCCATGTTTTTTGCATCTCTTGGTATAACAACATCCGTAC
CGTGACTGTCTGTAAGATAGACTCGTGTGCCGTTTTTCATTTGGTTGTGT
GAGCCAGCCTCAAGAGTTGTACACTCGTACCGATATACCACGCTCTAGTT
CCTGGTGTCCTCCCAGTCAATAGTCAATAGGACAACACTCACTGGCACGT
GGGTGCACCTCAACGCACGCGTGCTTACGCTTGTGAAAAAACAAAACTCA
CGCCAGTTCCCTACTATGTATGCACGTATGGTCAGCTGAACAGGGAAAAT
GAATATTTACCTGTCCCCGTACGCGCCTAAGAAGTTGGTCTCGCGAGACG
GGTTCGGCCGTCCCGTCCCGCGTCAGCCTGCTCAATTTCCATACTCAGGC
TGGATCTGGTGCTTACTCAAGGGATTCCTCCTGATTTCCGCGGCAGCGTT
CATTAATTTATTTAAATTGCCATCCGGCATCGGGTCGGGTCAGTCCCGAG
TTTATCGGGTCACGCAATTGCGTATTGATGGCCTTCACTGTCGAGAGTCC
GCAGGCACAGGGCCAGTAGTCATCAAGGTAGTTCTAGTAACGGGTGCTTC
CTTTTCAGGTTCACCATGGACCAATTAATATGCGCATCTCTTTTCCCACA
CCCACTATTGGCATGAAGTGGTTATAGCTTGAAGTATCTAACCTCGTTGT
CGTTGTTGTGCGTCAAATGGAAAGGAGAGGGAGAGAACTCTATTGAATAG
CCGCAGGATAACCTATGGACTGGAATAAAACACCTCGTACATTCACCCAT
GATTCGTCAAAATCGAGCTATACTTTGGAGCTAAGGTTTCTGTTAACTTG
GGAGCTCAAGATTAAGATGGGCCGACGGTCGATTGTTAAAAATTATAGCG
TTTATTCGCTAAATTTTGGGAGACTACCACCGATGTCCGATTCTGACCCC
AAGAGACGGCCTGATGGGGTGGGGTCCTTTACCGTCAGGTTCCACTAGTG
TAATGAGAAGTATCTTTGACCGGGCAGGGTCAGTTACGCTAGTGGGGAAC
CTGACGGTAAAGGACCCCACCCCATCACACTAGTGTATCGATCTATGTAC
ACTAGTGTAACTGTTTTTATGTGTTGAACAGTTGGACTGTTCTATGGTTG
TCTGAGTTCTATGATTCAATTCTAATCAGACGTTTTCAAGAAATTGAACC
GCGACCGTCCGTCAGGGGCAATAAGATTACGTTGAAACTGTAATTCTTCC
GATGAAAGGAATTTTTACCCGATCGGTTACTGTGAAGAATATAACAACAA
CAACAACAACACACAACTATTATTTCAGCGAGGAGATAAGTTCCCTCTCG
ATCAGTGCAACCTGTTCCACTGCAAACGCTTGGGTTACCCCCGTCCCTAC
CTCTCACACTGCGAACGATGAAGAAGGTGGAGGTGAGGATGGTGTCTTCC
TGTACCCCGCCCGTGTACTGTGATAATACCAGATCCAGACGCTACAGCTT
AGAGCAATGACGTTCAGCGTACACTGCACGAAAACCAGTCATCCCTCTGG
GTCAAACTTGAAACTCGTCTATTTATAGTATTATCAGAGAGAACTTGTAG
GTAATCGCAGTAAGTAGGAGCTTGGACAAGTATTGTTTTTTAGAGAGCGC
TCCGAACCGAGACTGAACAAGGAGATGTAGAAAGCGTGGAATTCGTCCCT
CGTCTCTCATCATCGCGTAGATTTAGACTCGAATTTGCTGCATCGTGGGT
TCTCCAGGTTTCTACGCCGGGAACGAACCCGTTCCGTTCGTCACCGCGTG
TCGAAGCCATGCACGGAGTGATAAGAAGCCTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig12011:7786..9768+

>mRNA_A-nodosum_M_contig12011.7.1 ID=mRNA_A-nodosum_M_contig12011.7.1|Name=mRNA_A-nodosum_M_contig12011.7.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=162bp|location=Sequence derived from alignment at A-nodosum_M_contig12011:7786..9768+ (Ascophyllum nodosum dioecious)
TGCGACGTGTTTCTGTTCAACTACCGAGGCTACGGCCGCTCTGGCGGGAA
GGCTTCGCCGTCCGGTATCACCAAGGACGTACGGGAGGTTTCTACGCCGG
GAACGAACCCGTTCCGTTCGTCACCGCGTGTCGAAGCCATGCACGGAGTG
ATAAGAAGCCTG
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