mRNA_A-nodosum_M_contig120.9.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig120.9.1
Unique NamemRNA_A-nodosum_M_contig120.9.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig120.9.1 vs. uniprot
Match: D7G0S7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0S7_ECTSI)

HSP 1 Score: 357 bits (915), Expect = 2.070e-113
Identity = 182/276 (65.94%), Postives = 209/276 (75.72%), Query Frame = 2 
Query:  110 TSVARRAGRE---PLTVCMSLGPRDGGGNEHKDYKDHREETEDNSRSRDDDLMVGVKERDWRLFRKNLVSQYGEDTAKAGWKDDCWAHEIGRVEPGCLLLATEEIWDGPFHQSVILVLSHHHDLGTVGLILNRPGPQRLHSLAGLKSDLAEVFADSQVFDGGPVGLGTMTVVHSAERADGSETVLPG-VYAGGFDSLVRLTRQGTVAKDRVRFVHGHSAWAPGQLQRELNRNQWFVAAAAPELVTADCDKPFNPLWGKVLRLMGGRYQEVAKRNEP 925
            T+ A R GR    P+    S     GGG E +  +    +         DDL+  VK RDWRLFRKNL+++YGED  K  W D CWAH+IG VE GCLL+ATEEI  G FHQSVILVLSH  D GT+GLILNRPGPQRL SL GL+ DLAEVF DSQVFDGGP+GLGTMTV+H A   +GS+ VL G V+AGGFD+LV +TRQGTV+KDRVRFVHGHSAW+PGQLQ EL+ NQWFVAAAAPEL+T  CDKPF+PLW K+LRLMGG+YQEVAKRNEP
Sbjct:   35 TAAAARLGRNKGLPVPAASSRDGGSGGGVEDQGRRWEEMDXXXXXXXXXDDLLSEVKGRDWRLFRKNLITRYGEDIGKDPWSDGCWAHDIGTVEAGCLLIATEEIDSGTFHQSVILVLSHARDQGTLGLILNRPGPQRLRSLPGLQPDLAEVFGDSQVFDGGPMGLGTMTVLHDA-NVEGSDPVLDGGVFAGGFDTLVDVTRQGTVSKDRVRFVHGHSAWSPGQLQGELDHNQWFVAAAAPELITEHCDKPFHPLWTKLLRLMGGKYQEVAKRNEP 309
[Close]
BLAST of mRNA_A-nodosum_M_contig120.9.1 vs. uniprot
Match: A0A836CNM8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNM8_9STRA)

HSP 1 Score: 219 bits (559), Expect = 7.350e-62
Identity = 110/234 (47.01%), Postives = 147/234 (62.82%), Query Frame = 2 
Query:  251 DLMVGVKERDWRLFRKNLVSQYGED---------TAKAGWKDDCWAHEIGRVEPGCLLLATEEIWDGPFHQSVILVLSHHHDLGTVGLILNRPGPQRLHSLAGLKSDLAEVFADSQVFDGGPVGLGTMTVVHSAERADGSETVLPGVYAGGFDSLVRLTRQGTVAKDRVRFVHGHSAWAPGQLQRELNRNQWFVAAAAPELVTAD--CDKPFNPLWGKVLRLMGGRYQEVAKRN 919
            D++  VK+ DWR FR NLV +  E+          A+  W+DD WAHEIG VE GC+LLA E +  G FHQ+ +LVL H  + GT+GLILNRP  +R+  + GL  D+   F    V  GGPVG G MT +H  ++A G + + PG+Y GGF+ LVRL ++G V    +R  HGH+AW PGQL REL  + W++AAAAP LVT      +  + +W ++L LMGG Y EVA+RN
Sbjct:   47 DVIPDVKQLDWRAFRANLVRRSREEGFGGSSAXXXARRKWRDDAWAHEIGVVEKGCVLLAHETL-QGVFHQTAVLVLDHDDNAGTLGLILNRPTKRRIAGVPGLGRDMQAAFGQCAVHYGGPVGAGGMTALHGVKQARGGQEIAPGLYVGGFEDLVRLAQEGRVDGSSLRLAHGHAAWGPGQLSRELRADFWYLAAAAPALVTGAGAAGRAPSRMWHQLLDLMGGSYAEVARRN 279
[Close]
BLAST of mRNA_A-nodosum_M_contig120.9.1 vs. uniprot
Match: A0A7S2Y026_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y026_9STRA)

HSP 1 Score: 190 bits (483), Expect = 4.110e-51
Identity = 94/225 (41.78%), Postives = 136/225 (60.44%), Query Frame = 2 
Query:  245 DDDLMVGVKERDWRLFRKNLVSQYGEDTAKAGWKDDCWAHEIGRVEPGCLLLATEEIWDGPFHQSVILVLSHHHDLGTVGLILNRPGPQRLHSLAGLKSDLAEVFADSQVFDGGPVGLGTMTVVHSAERADGSETVLPGVYAGGFDSLVRLTRQGTVAKDRVRFVHGHSAWAPGQLQRELNRNQWFVAAAAPELVTADCDKPFNPLWGKVLRLMGGRYQEVAKRN 919
            D + +  V   DWR FR  LV+QY     +  W +D WAH+IG++E GCLLLA++ + D  F QSVILVL+H  D GT G++LNRP    + ++  +   L E F ++ ++ GGP+GL  + VVH+ E  +G+  +  G+Y GG   L     QG +   +VRF  GH+AW PGQL++E+ +  W+ A  +PELV   C     PLW ++L LMGG Y E+ K+N
Sbjct:   59 DSETINDVGNVDWRDFRAKLVAQYS-GKERENWTEDRWAHDIGQIENGCLLLASDVMDDDTFWQSVILVLNHDPDNGTFGIVLNRPTGAHVCNVRDIVPALREAFGEAPLYLGGPMGLDEVNVVHAVEGVEGAIEIRKGLYHGGVAGLQERAEQGQLDLAKVRFEAGHAAWNPGQLEQEIEKGWWYPAVCSPELVVRPCIGLPVPLWCQILDLMGGEYAEIGKKN 282
[Close]
BLAST of mRNA_A-nodosum_M_contig120.9.1 vs. uniprot
Match: A0A835Z6U1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6U1_9STRA)

HSP 1 Score: 164 bits (416), Expect = 9.070e-41
Identity = 101/271 (37.27%), Postives = 134/271 (49.45%), Query Frame = 2 
Query:  251 DLMVGVKERDWRLFRKNLVSQYGEDTAKA---GWKDDCWAHEIGRVEPGCLLLATEEIWDGPFHQSVILVLSHHHDLGTVGLILNRPGPQRLHSLAGLKSDLAEVFADSQVFDGGPVGLGTMTVVHSAERADGSETVLPGVYAGGFDSLVRLT------------------------------RQGTVAK------DRVRFVHGHSAWAPGQ---------------------LQRELNRNQWFVAAAAPELVTADCD--KPFNPLWGKVL 877
            D +  VK +DWR FR NLV +  E+   A   GW    WAH+IG VE GC+LLA E + +G F+Q+V+L+L H    GT+GLI+NRP  +R+  + GL  D+   F D  V  GGPVG G MT +HSA  A G + V P VY GG + LVRL                               R G VA+        +R   GH+AW PGQ                     L+REL  N W+VA+AAPEL+T      K  + +W +++
Sbjct:   57 DTIPDVKSKDWRAFRANLVRRSAEEGFGAPHRGWSGGKWAHDIGCVEKGCVLLAHESL-EGVFYQTVVLILDHDDTRGTLGLIINRPTKKRIAGVPGLGRDVQRAFGDCPVLYGGPVGAGGMTALHSAGEAKGCQEVAPSVYVGGLEGLVRLAQEATPWSVVRRIAALLWRRLVNLGGKGRALRSGGVAQRGHAHGSTLRLAVGHAAWVPGQEKETASNTQAPAPLGAERLRHLKRELRANFWYVASAAPELITGPFTSAKQTSSMWHQLV 326
[Close]
BLAST of mRNA_A-nodosum_M_contig120.9.1 vs. uniprot
Match: A0A7S1BIP2_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BIP2_9STRA)

HSP 1 Score: 146 bits (368), Expect = 8.900e-34
Identity = 78/215 (36.28%), Postives = 126/215 (58.60%), Query Frame = 2 
Query:  320 EDTAKA--GWKDDCWAHEIGRVEPGCLLLATEEIWDGPFHQSVILVLSHHHDLGTVGLILNRPGPQRLHSLAG--LKSDLAEV----FADSQVFDGGPVGLGTMTVVHSAERADGSETVLPGVYAGGFDSLVRLTRQGTVAKDRVRFVHGHSAWAPGQLQRELNRNQWFVAAAAPELVTADCDKPFNP-------LWGKVLRLMGGRYQEVAKRN 919
            ++TA+    + ++ WAH +  VE GCLLLA+E++  G FHQ+V+L++SH+ +LG++G+++NRP  +++  L+G   KS + +     FA+S V  GGPV      ++H    A+G+  +  GV+ GG   L R  R G     R   V GH+AW PGQLQRE+++  W +AAA+ +L+        +P       LW ++L  M G Y+++A  N
Sbjct:  241 QETAQTDFAFNENRWAHPLSHVEKGCLLLASEKL-GGIFHQTVVLIISHNDNLGSMGVVINRPLGKKIKELSGPARKSTIPDAMRSSFAESTVTYGGPVQTDHYAILHGYNLAEGAVELTKGVFVGGHTDLERDVRSGCFLPMRALLVKGHAAWVPGQLQREISKGVWHIAAASSDLILRYAGAKEDPETEFPDNLWSEILSAMDGDYKKIALAN 454
[Close]
BLAST of mRNA_A-nodosum_M_contig120.9.1 vs. uniprot
Match: R7QN66_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QN66_CHOCR)

HSP 1 Score: 137 bits (344), Expect = 2.350e-32
Identity = 84/219 (38.36%), Postives = 122/219 (55.71%), Query Frame = 2 
Query:  278 DWRLFRKNLVSQYGEDTAKAGWKDDC-WAHEIGRVEPGCLLLATEEIWDGP-----FHQSVILVLSHHHDLGTVGLILNRPGPQRLHSLAGLKSDLAEVFADSQVFDGGPVGLGTMTVVHSAERADGSETVLPGVYAGGFDSLVRLTRQGTVAKDRVRFVHGHSAWAPGQLQRELNRNQWFVAAAAPELVTADCDKPFNPLWGKVLRLMGGRYQEVAKR 916
            DWR FR  LV Q  + T  AG      WAHE+  VE GCLL+A+ E + G      F  SV+LVL+HH D GTVG+ILNRP    + S   L+  ++   A + ++ GGPV L ++  +H+     G+  V+ GV   G   ++    +G +  D  RF  G+S W+PGQLQ E++   W+  A+  ELVT       + L  K+L+LMGGR+ ++ +R
Sbjct:   42 DWRSFRARLV-QTEQTTTPAGEPSTKEWAHEVPFVEAGCLLIASPEHFVGEHSCSFFANSVVLVLTHHSDKGTVGVILNRPVAAAV-SEPRLRGAVSA--APAPLYLGGPVALDSLLALHNDASIPGAGQVVDGVATSGVAEVLSRIERGQMNVDSCRFFCGYSGWSPGQLQEEVDSGVWYTCASCTELVTEKGLHRDDYLTKKLLKLMGGRFTQIGER 256
[Close]
BLAST of mRNA_A-nodosum_M_contig120.9.1 vs. uniprot
Match: A0A1E7FAB9_9STRA (DUF179-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FAB9_9STRA)

HSP 1 Score: 139 bits (350), Expect = 1.490e-31
Identity = 70/197 (35.53%), Postives = 106/197 (53.81%), Query Frame = 2 
Query:  356 WAHEIGRVEPGCLLLATEEIWDGPFHQSVILVLSHHHDLGTVGLILNRPGPQRLHSLAG-----LKSDLAEVFADSQVFDGGPVGLGTMTVVHSAERADGSETVLPGVYAGGFDSLVRLTRQGTVAKDRVRFVHGHSAWAPGQLQRELNRNQWFVAAAAPELVTADCDKP------FNPLWGKVLRLMGGRYQEVAK 913
            WAHEI  +EPGC+L+A E++  G FHQ++IL++ HH   GT G+++NRP  + +  +A      L   L   F  S V  GGPV     +V+H     +GS+ + PGV+ GG + L+   R          F+ GH+AW  GQL+RE+ ++ W+VA+A+ + +      P         LW  +L  MG  Y E+ K
Sbjct:  203 WAHEIDHIEPGCVLIANEKL-GGVFHQTIILIVDHHEKTGTTGVVINRPFEEDVMKIASEQQTNLDISLKLAFTSSPVTYGGPVLTEDFSVLHGFGHVEGSKKIAPGVFIGGSEELMNEVRISRFDPRHALFIKGHAAWVTGQLEREIQKDVWYVASASSDFMLRYAGAPTTEEDDVEDLWVDILNCMGDNYAELPK 398
[Close]
BLAST of mRNA_A-nodosum_M_contig120.9.1 vs. uniprot
Match: A0A7S2MI87_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MI87_9STRA)

HSP 1 Score: 137 bits (346), Expect = 3.140e-31
Identity = 72/197 (36.55%), Postives = 108/197 (54.82%), Query Frame = 2 
Query:  350 DCWAHEIGRVEPGCLLLATEEIWDGPFHQSVILVLSHHHDLGTVGLILNRPGPQRLHSLAGLKSDLAEV-----FADSQVFDGGPVGLGTMTVVHSAERADGSETVLPGVYAGGFDSLVRLTRQGTVAKDRVRFVHGHSAWAPGQLQRELNRNQWFVAAAAPELVTADCDKPFNP-----LWGKVLRLMGGRYQEVA 910
            D WAH IG +EPGC+L+A E++  G FHQ+V+L++ HH   GT G+++NRP    L  +A   +   +V     F  S V  GGPV     +++H+      S  V PG+Y GG   LV   R+  +      FV GH+AW  GQLQRE+++  W+ A+ + + +        N      LW ++L  MGGR++E+A
Sbjct:  212 DHWAHPIGHIEPGCVLVANEKL-GGVFHQTVVLIIEHHEKKGTTGIVINRPLRGNLFKVAQETTSNVDVSLRLAFTSSPVSYGGPVMPEEYSILHTHGYIKDSVRVAPGIYVGGSRELVDEVRRNELDPSDALFVKGHAAWVAGQLQREISKGVWYTASCSEDFILRYVKPHDNSIRGEDLWTELLTTMGGRFEEIA 407
[Close]
BLAST of mRNA_A-nodosum_M_contig120.9.1 vs. uniprot
Match: A0A1Y1HP74_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HP74_KLENI)

HSP 1 Score: 134 bits (338), Expect = 7.390e-31
Identity = 83/249 (33.33%), Postives = 126/249 (50.60%), Query Frame = 2 
Query:  233 SRSRDDDLMVGVKERDWRLFRKNLVSQYGEDTAKAGWKDDC------------------WAHEIGRVEPGCLLLATEEIWDGP---FHQSVILVLSHHHDLGTVGLILNRPGPQRLHSLAGLKSDLAEVFADSQVFDGGPVGLGTMTVVHSAERADGSETVLPGVYAGGFDSLVRLTRQGTVAKDRVRFVHGHSAWAPGQLQRELNRNQWFVAAAAPELVTADCDKPFNPLWGKVLRLMGGRYQEVAKR 916
            S S DDD      E DWR FR  LV++   + A+   ++                    WAH +   E G L++A    ++     F+ +VIL+L HH + G++G+ILN+P    L +L      L+   A  +++ GG VG G   V+H     DG+  V+ GVY GGF+++    R G    D  R+ H ++ W PGQL+ E+    WF+ + + +L+    +    PLW +VL+LMGG Y EVAKR
Sbjct:   87 SGSGDDDSPTAA-EIDWREFRARLVARSAAEAAERAREEQLESDAAEDRAVPEIQPGGSWAHPLVLPEVGALVIAKPGYFNQNQQYFNHAVILLL-HHGEEGSMGIILNKPTEHTLGTLFEGIDTLSPELASGRLYLGGDVGHGATHVLHRHSDLDGTRKVVEGVYTGGFEAIGEHIRAGKSECDDYRWFHMYAGWGPGQLENEVKAGVWFLGSCSRDLLLTHSEDLKTPLWDEVLQLMGGTYAEVAKR 333
[Close]
BLAST of mRNA_A-nodosum_M_contig120.9.1 vs. uniprot
Match: A0A8J4CWK5_9CHLO (Uncharacterized protein n=2 Tax=Volvox TaxID=3066 RepID=A0A8J4CWK5_9CHLO)

HSP 1 Score: 130 bits (327), Expect = 1.190e-29
Identity = 79/217 (36.41%), Postives = 116/217 (53.46%), Query Frame = 2 
Query:  278 DWRLFRKNLVSQYGEDTAKAGWKDDC--WAHEIGRVEPGCLLLATEEIWDGP---FHQSVILVLSHHHDLGTVGLILNRPGPQRLHSLAGLKSDLAEVFADSQVFDGGPVGLGTMTVVHSAERADGSETVLPGVYAGGFDSLVRLTRQGTVAKDRVRFVHGHSAWAPGQLQRELNRNQWFVAAAAPELVTADCDKPFNP-LWGKVLRLMGGRYQEVA 910
            DWR FR  LVSQ     ++ G   D   WAH I + E G LLLA   ++      FH++ IL+L H  DLG+ G+ILNRP    +  +  L    A+ F   +++ GG VG G + V+H   +  G+  V+ GVYAGG D+       G    +  R+   ++ W PGQLQ E  R  WF AAA+P+++  D +    P  W K++ ++GG Y E++
Sbjct:   92 DWREFRAKLVSQ-----SRGGRDADTGEWAHAIPKPEKGALLLAHPLLFQQSQIYFHRAAILLLEHG-DLGSYGVILNRPSKFLIRDVP-LSRPQAQ-FGSCRLYIGGDVGTGEVQVLHPYGQLSGATEVVKGVYAGGMDAARDAVDAGFAQAENFRWFSAYAGWGPGQLQMECKRGVWFTAAASPKVLLQDVEPGEGPKYWHKIMSMLGGDYAELS 300
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig120.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0S7_ECTSI2.070e-11365.94Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CNM8_9STRA7.350e-6247.01Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2Y026_9STRA4.110e-5141.78Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835Z6U1_9STRA9.070e-4137.27Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1BIP2_9STRA8.900e-3436.28Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
R7QN66_CHOCR2.350e-3238.36Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A1E7FAB9_9STRA1.490e-3135.53DUF179-domain-containing protein n=1 Tax=Fragilari... [more]
A0A7S2MI87_9STRA3.140e-3136.55Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A1Y1HP74_KLENI7.390e-3133.33Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
A0A8J4CWK5_9CHLO1.190e-2936.41Uncharacterized protein n=2 Tax=Volvox TaxID=3066 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig120contigA-nodosum_M_contig120:71605..80583 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G0S7
PFAMsDUF179
Model size2478
Max annot lvl2759|Eukaryota
KEGG koko:K07735
Hectar predicted targeting categoryother localisation
Exons7
Evalue6.15e-122
EggNOG OGsCOG1678@1|root,2QRDU@2759|Eukaryota
Ec32 ortholog descriptionProtein of unknown function UPF0301
Ec32 orthologEc-23_001700.1
DescriptionUncharacterized ACR, COG1678
Cds size780
COG categoryK
BRITEko00000,ko03000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig120.9.1prot_A-nodosum_M_contig120.9.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig120 71759..79039 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866626.0000684-UTR-A-nodosum_M_contig120:71604..717581680866626.0000684-UTR-A-nodosum_M_contig120:71604..71758Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig120 71605..71758 +
1680866626.0782824-UTR-A-nodosum_M_contig120:79039..805831680866626.0782824-UTR-A-nodosum_M_contig120:79039..80583Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig120 79040..80583 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866626.0113928-CDS-A-nodosum_M_contig120:71758..718601680866626.0113928-CDS-A-nodosum_M_contig120:71758..71860Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig120 71759..71860 +
1680866626.0214708-CDS-A-nodosum_M_contig120:75289..754181680866626.0214708-CDS-A-nodosum_M_contig120:75289..75418Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig120 75290..75418 +
1680866626.0299466-CDS-A-nodosum_M_contig120:76043..762291680866626.0299466-CDS-A-nodosum_M_contig120:76043..76229Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig120 76044..76229 +
1680866626.0392456-CDS-A-nodosum_M_contig120:76487..766221680866626.0392456-CDS-A-nodosum_M_contig120:76487..76622Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig120 76488..76622 +
1680866626.0481315-CDS-A-nodosum_M_contig120:77251..773411680866626.0481315-CDS-A-nodosum_M_contig120:77251..77341Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig120 77252..77341 +
1680866626.0563204-CDS-A-nodosum_M_contig120:78018..780931680866626.0563204-CDS-A-nodosum_M_contig120:78018..78093Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig120 78019..78093 +
1680866626.0678806-CDS-A-nodosum_M_contig120:78976..790391680866626.0678806-CDS-A-nodosum_M_contig120:78976..79039Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig120 78977..79039 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig120.9.1

>prot_A-nodosum_M_contig120.9.1 ID=prot_A-nodosum_M_contig120.9.1|Name=mRNA_A-nodosum_M_contig120.9.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=260bp
MSLGPRDGGGNEHKDYKDHREETEDNSRSRDDDLMVGVKERDWRLFRKNL
VSQYGEDTAKAGWKDDCWAHEIGRVEPGCLLLATEEIWDGPFHQSVILVL
SHHHDLGTVGLILNRPGPQRLHSLAGLKSDLAEVFADSQVFDGGPVGLGT
MTVVHSAERADGSETVLPGVYAGGFDSLVRLTRQGTVAKDRVRFVHGHSA
WAPGQLQRELNRNQWFVAAAAPELVTADCDKPFNPLWGKVLRLMGGRYQE
VAKRNEPTA*
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mRNA from alignment at A-nodosum_M_contig120:71605..80583+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig120.9.1 ID=mRNA_A-nodosum_M_contig120.9.1|Name=mRNA_A-nodosum_M_contig120.9.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=8979bp|location=Sequence derived from alignment at A-nodosum_M_contig120:71605..80583+ (Ascophyllum nodosum dioecious)
GACCGCCTATGGCTTCACCTTGATTCAGGGAAGAGGAACTGAAAGCTATC
GCACCCATGGGGCGGCTCTCACCTCGAGAGACCGTGATTCGAGAGCTCGC
GTATCTGCTACATCCGTAGCTCGACGAGCGGGAAGAGAGCCCCTTACTGT
CTGCATGTCTCTCGGCCCTCGGGATGGTGGGGGCAATGAGCACAAGGACT
ACAAGGACCACAGGGAGGAGACGGAAGATAACAGCCGCAGCAGGGACGAT
GACCTCGTGAGTGAAGCACCTATGAACTCAGGCCCTTGAGCGAAATCTCA
TTTAAAACTCTGTTCAAGTTCTTGTGGGATTTTTCGGTTTCGGGTTGAAG
CTCTGCATGCTTTGTTTTCATAAGATCATGTTCTTACAAACAGACGGACT
TTCGGTGAAGTCATTTGGCGGCTGGCTCTTTGTACTTCACGCGGCGAACG
CCCCAAGCCTTTCTTAACCAAGTTTAAAAGCCGAGTGCTTGCGACTAAGC
TCTCGTACGTAACAAAAGCTGGATGCACTTCTATTTCAGGAGTACAGAGT
GCGACCACTCTCCAGTCTACTGTCTGTAGGGACGCTGAATACCTTCTAGT
ACTGGTACGTTCTTGCGCCTTGGCACGAAGTAAGACGGTATTATTCCTCA
TGGCGACTTTATCGAAGCTCTAGGAGACTAGCTCTACCGAGTACAGCTAC
TCTTATTTACTATTCCCATGCATCTCTTATTCTAAATCTGTATTACTGTC
TTCACATAGGTATGTATGTATGCATGTATTTATGTGTGGTCATCACATAT
AGCAGAGTATGGATCAACCGGGTAAGGTTGCCAATCCTGCTCGTGGTCAG
CTGAACAGGGAAAATGAATATTCCCCTGTCCCCGTGCGTGCCTGAGAATT
TGGTCTCGCGAGACGGGTTCAGCCGTCCCGTCCCGCGTCAGCCTGCCCAT
CTCCATACTCAGGCTGAATCTGGTGCTTACTTACGGGATTCCTCCCGAGT
TCCGCGGCGGCGTCGAATTATGAAATCGCCGTGCGCCATCGGGTCAGTCC
CGAGTTTATCAGGTCACGCAAATACGTACCGATGGCGTTCACTGCCGAGA
GTCCGCCGGCACAGGGCCAGTAAACCTCAAGGTAGTTCCGAACGAGTGCT
GCCTTGGCAGGTCACCATGGACCGATTAATATGCGCCTCTCTTTCCCACA
CCCACCATTGGTATGAAGTGGGCATGTTGAAAGTACCGGTAAAAAGAGTC
TGGAGTATGATTTGATTGTGTAGCCGGTCGCCCAAGTGGTTCAGTTGGTA
ACCTCGAAACTTTCTGACGTTGGGACGTGAGTTCGAATCTCGGTATCATC
AAACGAAATGGGATTTTTTCTTACAAAAAATGTATAAAAAATATTAAACA
ATCAAAAGTCGACGAGGAAATGAATCCTTCTCGAGAGAAAAATTAAGGCA
AGCACCTGAGAAGGAAGGTGGAGAAATCATGTGTGGCCTTCCTTCTCTGT
GTGAACCCCACTGCTACGTCGCTCGAATTTTGTTCACTAACGAATTAATT
GTTCTCCATTTATTATTTGATTGAATTGATTGATTGAATTATCACATGCC
GATGCTTTCAACATGCTATAACGACTTCATACCAATAGTGAGTGTGGGAA
AGAGAGGCGCGTATTATTTGGTCCATGGTGACCTGCCAAGGCAGCCAGCA
CCCGTTACTGGAACTACGTTGAGATTTACTGGCTCCGTGCCGGTGGACTC
TCGGCAGTAAACGCCATCAGTACGCAACTGCGTGACCCGATAAACTCGGG
GTTGACCTGATGGCGTATGGCGATTTAAATATATAAATGGACGCCGCTGC
CGAAATCGGGAGGGATCCCGTAAGTAAGGACCAGATTCAGCCTGAGTATG
AAGATGAGCAGGCTGACGCGGGACGAGACTGCCGAACCCATCTCGCGAGA
CCAAATTCTCAGGCGTGAACGGGGACAGAGAAACACTCATTTTCCCCGTT
CAGCTGACCACGAGCAGGATTGGCAGCCTTACCCGGTTGATCCTTACTCT
TGCTATATGTGATGACCATACATACATACATACCTGATCTAAAAAATCCA
GCCCGTGGTGACAAACAACGTTACTTCCATAGGGGAACCCGATTAAATGC
CATGAAGAGGTTTTGTCTTTGCAGCCTATGACCCCACCTAAACGTTTTGA
CATTTTCTCCCCTGACTGGGGGATGCACAGAAGCTCTAGATGCGTTCAGA
TTTTTGTTTAAACACCACCCGGAAGGAAAAAACGTACGACGTACTCTCCA
TACAAAGAGAAAAACGGTACTGGTCCAAAAATACTCGGAAAAAGCGACAT
TTCCATAGAAACGAAAAAAAGGAACAAAAACGAAAAAGGACGCAAGGCAT
AGGGTTGTTAGTTAACTACGTGTGGCTGTCGGGGCGCATGCTTTATCGAA
AAATGATTGAACGAAGGGCCGCGGCTTCAGTGAGAGCAAAAAAGACAAAA
ACAAAAACAGAAACAAAAAACGTAACGTCAGAGAAAGACAAGACGACATC
CACCCGGAGGACACAAGTTCGCCCCACTTGTGGCTAATCAACTATGGCGA
GCGAACCAGCACGAGCCCGCCTGCTTTGGGCTATCCTCTTTTTGGTCCCT
CCCGTCACGTTCGGGCATACTACTACTACTACTACTTCTACTGTAGCATG
CCTAGAGTGCAAATATGCAACATTCTGGAAAGGGGTCGGCAAGCTGAGCA
CCTGTAAAAATACCTAGAGTGTGTTCAGTACGGTACCGGTACACCCGGTA
CCGGTATTGATGTCGTACCGAACTTACCGAAGTGTCCGGTACCGGGATTG
ATGTCGTACCGAACTTACCGAAGTGTCCGGTACCGGTAATGATGTTGCAC
TGAACTTACAAAAGTGTCCGGTACCGGTAATGGTGTTGTACCGAACTTAC
CGAAGTGCCCGGTACCGGAATTGATGTTGTACCGTACTTACCGAAGCGCC
CGGTTCCGGTATGGATGTCGTACCGGTATCGGCACCGGTACAGACTTCCA
TACCGGTACCGGCGGTATATATACCGGGCATACCCGGTATTTCACAACGG
TACACCCCCTTGCATTTCAGCACACTTTTAACTGTTAATAACAAAAAAAA
AAAAGAGTGTACGCCTTAAGTAATTCTTTGTACGCTGGTAAGAAGGTACC
CTTTGGATTAGCACCTACGCTGCGCGCGCAAAGCTGTAGGTCCGGGGTAG
AAATTAGTAAACCTGGCACTCTACAGCTCTAAGTACAGCAGTTAACATAC
TGTTTGCGTGGTTGTTTATTTTGTGCGCGATGTTTGTCGCATGCAGCGCG
GCGGCGCCTGAAGCAGTCGCATTTGATCTGACGCGATCTGGTCGCATGAA
GCGCGGCGGCGCCTGAAGCAGTCACACATTTCATGTACATTTCATGTGAC
GCGATTTTACCCACTTTTATTTACACTAATACTTTATAAGTTGTAGGGTG
CGAGCCGCCGTGTGAGTAAAACAGTAAAATCTTGGATCGGTTCCTCCGTT
CGCTTCTCAAACCTCGCCCCCCCCCCCCGCCCTAAGCTCTAGGCGACCTA
TTCCTCCTCGTTCCACCGTCCACCTGATTTATTTGTACTGTAACCGTTGT
ACTGTAACCGTTGACGGTGGCCCTGCCAAGCGCAGATGGTCGGCGTCAAG
GAACGCGACTGGCGGTTGTTCCGCAAGAACCTTGTCAGCCAGTACGGCGA
GGACACCGCCAAGGCCGGCTGGAAGGATGACTGCTGGGCCCACGAGATTG
GGAGGGTGGAGCCGGTGAGCCCCTAAGCCCGCATCGTACGTTTTCCGCTA
TTGCGTATCAAACAAACGAAGAAAACGTTCAACAGTCCCAAAAGTAGGCA
TCGCCGGTGAACATCTCCGACGCATTCGTGTTTGCGGTCAGTGGAATCGT
TAGAAATGGTTCCCGCATTTCGGGGGTGCCTCGCCCGCCAGGACAAAGGA
GATTTCTCACGTTTCCAAGTGCTTTAGCTATGCCGCACCGGCCTGTGCGG
GCTTTTCTTTTGTCGCCGAGCTGGGCGCGCGCTGGCGGTCCCTCGAACAC
CAGCTGCGGCACTTTTAAGAGTTTCGCGCGCATCCGCTGACGGTGCGACG
CAAGCACGATGTGCTGAGAGAACTCGAACAATAGCCTTGATGTTGGTAGC
CCGCCTTCGCTTCACCGCGTTGTCACTGGTATCACGAGTTCCGATTATCT
AGGTCACTCCGTCTCTCGCCTCTGCTAGCCCACGCCTTGACTACTTCCAG
TCACCGGTTTCACTCATGAAAATCTTCGCGCACGTGTAAAGCACATCTTA
TTCCAAGCATCTCCCTACTAACCTCAACAATCTATGTCATGCAGCGCTCG
CCTCCCCCCCCCCCCACCCCTCACCTGTCCGAGGCGCAGGGGTGCTTGCT
GCTCGCGACTGAAGAAATTTGGGACGGACCTTTCCACCAGTCCGTCATCC
TGGTTCTTAGTCACCACCACGACCTTGGCACCGTAGGTCTAATCTTGAAC
CGTCCAGGGCCGCAGCGTCTGCACTCCTTGGCCGGCCTCAAGTCGGACCT
GGCAGAAGTGTTCGCCGATTCTCAGGTGCTGCGACTCCCCTCCTTGAAAA
TAAAAAATGTATATGTAAATATATATATATATGGAGTGATTTATGAAAAA
TATATACCTGGTATATCGGAATCAACCGACATTCTAAAAGTGATGAAACG
CCTAGGTATGCTGCTGCCGTGGGTCTTCTACCGTCTTGGAGTGTTTCAAC
AGTTGCGGAACCCTGAGGAGAGCGAGGTGCGCGCCGGCATCCTCTCGCTG
TTTGCGTTAAAAACCACGTCTCTATTTTGGTAGGTGTTTGACGGCGGGCC
GGTTGGTCTCGGCACGATGACCGTGGTGCACTCGGCAGAGCGCGCCGATG
GGAGCGAGACAGTCCTACCCGGGGTGTACGCGGGTGGATTTGACTCGTTG
GTGAGGTTGACCCGCCAGGTGAGACTTTAAAGAGCAAGTTACGGTTCTGC
TTCCGATTCCCGCGCTGTACCCGCGCGCCGCCGAGTCCGGCAAACCGTCT
GAACGCCTGGTTTTTGTGCTTTTTATGACGGCCTTGAGTAACTTACGACC
TTCTTTCCCGGGATTATGCTGCTTGTACGTCGCTCTGTAGAGGGATGATT
CGTTGTTTCCGACCCCTGCTACTCGAAACACGCTTTCGTTTGCGACACGA
AGGGGATTTCCTACCTCGCGGCGTTTGACCAACGGCCAAGGCTTGAGTCG
TATCTGTCTGTGACTTATTCTGCGACTCATGCTGTGGCCTGTCCTGCGAC
CTGTGCGGATAGTTTACATTGATTTGTGCTGTAACTTTTGAATTTGTTTT
TTAGAGAATATTACGCGTGTGTGTGGGGGGGGGTAGGTCGTATGGCGACT
AATGCTAGTATAATAGTCGGAGTATTATTCGACGTGTCCCGACAGCTCAA
TGCGTTTCTGAGACTCCTTTCTCGACACACCGGTCTCCTAGAATTAACAG
GTCGTCGGACGTGGTCGTTATAAAGGAGCCACGTTGCCGTCGCGTTCCCC
CCGCGTCGCTGCTGTGATCTGACCACGCACGCGCGCCGCTTCCCCAGGGG
ACAGTGGCGAAAGACCGCGTGAGGTTCGTGCATGGACACTCGGCGTGGGC
TCCGGGACAGCTCCAACGAGAGCTGAACCGCAATCAGGTGCAGCCTGCGG
CGCGATCGTGCCCGTTTACTCGGAAAATATGCGTTTATTTGTACGTTCTG
ACGGACCTCACCCCCCATACTTGAGCTTTTGTCTATCGCAGTACTAAACT
TAACGAGTAAAATAAATGGTTACCAACCTTACAATTTAAACCACTGAGCT
AAACGCCCAATTAGCGCTGACTGGGCGAGTGGCGAAGTGATAAAATGCTA
ACCCCGACAAGAGCTAAACCGGGGTTCCGTCCCCGGTGTCGTGATCCTCT
TTATGGGTTTCTTTTGTGGAGAAGATATTATAGGATGGGATACATTTTAT
CCGAGAGAGGTGGTGCTATGGCCATAGGGACTGCGGGTCGCAGGAGAGAT
AGAAGTTCGGAACAGCTCTTACATTGACCGTTTCGGATAGGTCTAAAAGC
GCTGGTTATTCACCACAAGGGTCATATCCTTGGGTTGACACCGGAGACTA
TCGCACCGGAGACTATCGCGCCCTTGTTATGAAACCATTGAACCACGAAG
AAGCTAAACGCCCCGTCAGCACTGACTGGGCGCGTGGCTCAGTGGTTTCA
TTATAATCCTGCTAATGACGATATCACCGTCACATATTTTGACGTTTTTG
CCCGGCCCGCCTATTACTGCCCCCCCCCTTCCCCCCCCATCCTCTGACAT
CACATCCCAAACAGTGGTTCGTTGCCGCTGCGGCGCCGGAGCTTGTAACC
GCCGACTGCGACAAGCCATTCAACCCGCTTTGGGGGAAGGTGGGTGCGCT
GTACCACCCGCCGCGCTAGCGACACGCGCCCGGCTTGTGTTGGCTCGGAT
TCGCATTCCTGCTCTTTCTTTTTGGAGATTTTCGTTCGGCCAATTCCACA
CCGTGCTAAGCTTTGACCGATTTTGCCATTTTGCCGGCGCAAATATTACT
TTCTCCCGCCTGACGTCAACAGTCCCAACAATCCGACCGGGGAATCTACT
ACAAGATAATTTTGCTGCAGTACTCGCCGCCCGATCGGAGTAGCGAATAA
CCGCGCAATTCACGAGTACGGATTTTGTGGGGTTGAATCTTGACGGGACG
ATTCCTTTCGTACCCGTAGCGGAAACCGTGAGAAAACGAGCAAGTGAAAT
TCCATCATTGATTGGTTGACGAGGTGTAAGAGCGCTGAACTCGTACCGCG
ATAAAAATAAAAGTGAGGCCAGAACCGGGGAGATACGGGAAGATCCTTAG
TGGCCACAGACAGGTATACAGGATGGCAGCAGGTGGGGTTGGTGACCTAT
GGATTGCACGTTGAGACCCATCTACCGTAAGTGAGATACAAACAAAACCA
ACAGTTTATACCTATTAATAGCGCCAAAACGCTTTGCAGTCACTTTCGCA
AACCCGTTCGGTCCTCAAAAAGCCTTTTGGTGCGTCCCGGGATGCTGTCA
AAACAACAGCAATACGCACCGAGCTCGCGAACGCCGGGCCCCGTGACCTC
GTGGCAATTCTTGCGCCCGGGACAAGGAGGGGCGCTCTCAAACTAACCTC
CTTCGCTCCTGCAAAGCTGCGAACCTTGCTCCGTCCGCGCGATAATGCGA
TTCTGCGGTGTTTGAGTCCCATCCCATCCCATCCCATCCCATTCCATCCC
GTTCCATCCGCTATGGCAAAAGGTGCTCCGTCTTATGGGAGGAAGATACC
AAGAAGTTGCCAAGAGGAACGAGCCAACGGCATGACCAGCGCAGGTTCTG
AATTGGGTCGCGACCGTGTCTCGTGTCGTCAAGCGTGTAGACGAAAAGCC
GACGTTGACACGGTCGGGGCGTTCACGCTGTCACGGGTCGTCACCGGACG
AATGGTGGGGTGCTGGTGGAACCGGGGGGGGGGGCAATGGCTAGCGAATG
AGGACTTGAGTGTGGGAAACTCGGCGGGGAAAGAGCCGGCCCTTCGATGA
TATCACTTACGTCTCGTGATTTTTTTGGGTTGCGAAAGGGGAGAGAGAGA
AGATAGAGGGCAAACACTCTTTTTTGTAGGTGCTTGTCGCTTGCTCTGGC
TCTGGCGCAGTGAGGCCAAAGAAATTTGGACTTGTCGCGAGAACTGCGTA
ACTGCTGACCTGGGGTCGTTGAAATATCGATTGTTCGATGAGCTGGATGG
GAAAAGGGTCGGCAGCATCAGGGACGAAGATGAAGATTTGCACAAAAAGT
AGGCGGCGTTTTTTTTCGAGATGCACGAGCTGGCGGTTGTTGACCTTTTC
GCCGGAACGTGCTGCCCTACTGCTGAATTCCGAGTATCGGGGCCAGAAGA
ATTCGAACGTTCGCCGAAGGTGTTCGGAAACAAATACTTGTATAGAGACG
GGCGGGTAGACGGGCTGACGCGAGGTTCCCACGTGCTAGTGGAACGATTG
GACCAAAAGGGGCGCTCCGTGAGGCGCGCAATGTTTATAGAGAGTTATAA
AAATGATCTAAAGATGTAAATGAGATCTGCACAGTGTTCAGCCATCAAGT
GGAAGAGAATGGTACGTTTGTACGAAGAAGGTAGGAAACCGCGTGCGGGG
ACAGAGCGCACATACCGGCATAGGGTGGACGTGCGTGTCCTGTGGTTCTA
TAATATCTAGGAGCAGTATATAAAGTCATAGCCAGCAGCGGGGCACGACT
TTGTCGAACAAGTTGGTTGTGGGATGGGTATCTTGGGAGATGGTTTGATT
TACCCCCCGGTCAGCAAGCTGCAATCGGAGTGCGAAATATTACCATTTAG
GTACGGGTATATGTAAGCGCGCGTGACATTTGGCTGGGACATTTCCTGGG
GCAGCTAGAGTAACGCGCCATCGGGTCAAAGCGTTCACCGTAATGCAGTA
TCCGGGGAGGTGTAAAATCTCGTCCGATTGAACAGGCGTTTTGGGTAGTT
AACGTTTCTTGCTAGCCTGGGGAAGAGTCGTTGATGTTGAAGTACTATTT
TACTATTAATACGTGCATGGTTTGCCGCACCTTCGAGGTGAAATAGTCAC
CTAGGGGAAAATAGTGCATTCAGGCTCTGCAGCCCGAATACTTGGTATAA
TTATTTTGACACTTTTCCCTCGTCGGTCGGTACCTACCGGTGTTGCTCCT
TAGCGCGCCGACTGCCTGTTTACCTGTGGGCGCTCTTGCTCTTGTTACAT
GAAGCGGAAGAAGTGGGCATCAAGGTTGTACTGCAGTACTCTTGACACTG
GTACGATAGATGTAGATAGCGTGAATTAGAGGGACGTACTCCACGTCGTC
TAGAATTCAACCCCTCGAATTCAACGATT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig120:71605..80583+

>mRNA_A-nodosum_M_contig120.9.1 ID=mRNA_A-nodosum_M_contig120.9.1|Name=mRNA_A-nodosum_M_contig120.9.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=780bp|location=Sequence derived from alignment at A-nodosum_M_contig120:71605..80583+ (Ascophyllum nodosum dioecious)
ATGTCTCTCGGCCCTCGGGATGGTGGGGGCAATGAGCACAAGGACTACAA
GGACCACAGGGAGGAGACGGAAGATAACAGCCGCAGCAGGGACGATGACC
TCATGGTCGGCGTCAAGGAACGCGACTGGCGGTTGTTCCGCAAGAACCTT
GTCAGCCAGTACGGCGAGGACACCGCCAAGGCCGGCTGGAAGGATGACTG
CTGGGCCCACGAGATTGGGAGGGTGGAGCCGGGGTGCTTGCTGCTCGCGA
CTGAAGAAATTTGGGACGGACCTTTCCACCAGTCCGTCATCCTGGTTCTT
AGTCACCACCACGACCTTGGCACCGTAGGTCTAATCTTGAACCGTCCAGG
GCCGCAGCGTCTGCACTCCTTGGCCGGCCTCAAGTCGGACCTGGCAGAAG
TGTTCGCCGATTCTCAGGTGTTTGACGGCGGGCCGGTTGGTCTCGGCACG
ATGACCGTGGTGCACTCGGCAGAGCGCGCCGATGGGAGCGAGACAGTCCT
ACCCGGGGTGTACGCGGGTGGATTTGACTCGTTGGTGAGGTTGACCCGCC
AGGGGACAGTGGCGAAAGACCGCGTGAGGTTCGTGCATGGACACTCGGCG
TGGGCTCCGGGACAGCTCCAACGAGAGCTGAACCGCAATCAGTGGTTCGT
TGCCGCTGCGGCGCCGGAGCTTGTAACCGCCGACTGCGACAAGCCATTCA
ACCCGCTTTGGGGGAAGGTGCTCCGTCTTATGGGAGGAAGATACCAAGAA
GTTGCCAAGAGGAACGAGCCAACGGCATGA
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