mRNA_A-nodosum_M_contig12.36.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig12.36.1
Unique NamemRNA_A-nodosum_M_contig12.36.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig12.36.1 vs. uniprot
Match: D7FLY8_ECTSI (Endothelial protein B9 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLY8_ECTSI)

HSP 1 Score: 377 bits (967), Expect = 2.330e-127
Identity = 187/253 (73.91%), Postives = 204/253 (80.63%), Query Frame = 3 
Query:    9 MTSLSALTRTVTRDKGGFGKNAGSADPFNRTSQPGNSAGGEPQAAPQ-----------GPSNFFVMCTGQVEFGEFGGLDNLYCRYALSFGNDWYIIHGLDTGLSQIAQRVGGQDTAVVWNFPIDVTFKATNAFGWPRLALSVFRVDDLGRDTVVGYGSVLIPTQAGRYERAVHMYAPQPSSMLQRLRSWLSGAYPEFFDSKFVARGEGREVTRVKRSGAVKVSLDVMTRGMASFGYNNPEATYGSYNGQEVE 734
            MT+L+A+TRT+TRDK  FGK   + DPFN+T+     AG  P A              G SNFF+MCTGQVEFGEFG LDNLYCRY LSFGNDWYI+HGLDTGLSQIAQR GGQDT+VVWNFPIDVTFK+TNAFGWPR+ALSVFRVDD+GRDTVVGYGSVLIPTQAGR+ER  HMYAPQPSSMLQR R+W+SGAYPEFFDSKFV RGEGREVTRV+RSG VKVSLDVMTRGM  FGYN PE   G    Q  E
Sbjct:    1 MTTLAAMTRTITRDKPAFGK---TTDPFNKTA-----AGVSPAATASXXXXXXXXXXXGASNFFIMCTGQVEFGEFGSLDNLYCRYTLSFGNDWYIVHGLDTGLSQIAQRAGGQDTSVVWNFPIDVTFKSTNAFGWPRIALSVFRVDDMGRDTVVGYGSVLIPTQAGRHERVAHMYAPQPSSMLQRFRAWVSGAYPEFFDSKFVTRGEGREVTRVRRSGTVKVSLDVMTRGMVDFGYNRPEGMQGVSQDQRFE 245
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BLAST of mRNA_A-nodosum_M_contig12.36.1 vs. uniprot
Match: A0A6H5KBF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBF1_9PHAE)

HSP 1 Score: 251 bits (640), Expect = 3.850e-79
Identity = 122/189 (64.55%), Postives = 136/189 (71.96%), Query Frame = 3 
Query:  168 VMCTGQVEFGEFGGLDNLYCRYALSFGNDWYIIHGLDTGLSQIAQRVGGQDTAVVWNFPIDVTFKATNAFGWPRLALSVFRVDDLGRDTVVGYGSVLIPTQAGRYERAVHMYAPQPSSMLQRLRSWLSGAYPEFFDSKFVARGEGREVTRVKRSGAVKVSLDVMTRGMASFGYNNPEATYGSYNGQEVE 734
            ++C  ++   +FG LDNLYCRY LSFGNDWYI+HGLDTGLSQIAQR GGQDT+VVWNFPID+TFK+TNAFGWPRLALSVFRVDD+GRDTVVGYGSVLIPTQAGR+ER  HMYAPQPSSMLQR R+W+SGAYPE                             V+  GMA FGYN PE   G    Q  E
Sbjct:    1 MLCACRLLAPQFGSLDNLYCRYTLSFGNDWYIVHGLDTGLSQIAQRAGGQDTSVVWNFPIDITFKSTNAFGWPRLALSVFRVDDMGRDTVVGYGSVLIPTQAGRHERVAHMYAPQPSSMLQRFRAWVSGAYPE-----------------------------VIMLGMADFGYNRPEGMQGVSQDQRFE 160
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BLAST of mRNA_A-nodosum_M_contig12.36.1 vs. uniprot
Match: A0A7S1U318_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U318_9STRA)

HSP 1 Score: 252 bits (644), Expect = 4.610e-79
Identity = 114/183 (62.30%), Postives = 144/183 (78.69%), Query Frame = 3 
Query:  141 APQGPSNFFVMCTGQVEFGEFGGLDNLYCRYALSFGNDWYIIHGLDTGLSQIAQRVGGQDTAVVWNFPIDVTFKATNAFGWPRLALSVFRVDDLGRDTVVGYGSVLIPTQAGRYERAVHMYAPQPSSMLQRLRSWLSGAYPEFFDSKFVARGEGREVTRVKRSGAVKVSLDVMTRGMASFGYN 689
            AP  PS F +M TGQ+  G+F G DNLYCRY+L FG+DW + HG D+GLSQIA+R GG D A+VWNFPID TFK+TN FGWPR+A+SV+ VD LGRD + GYGSV+IPT  G+YER VHMYAP  SS+ Q+L +W+ G  PEFFDS F A+G GR+VTRV+  G V+V+L+V+ RG+A+FGY+
Sbjct:   15 APSAPSEFHLMVTGQIRSGDFDGADNLYCRYSLVFGHDWTVCHGPDSGLSQIARRGGGVDPALVWNFPIDATFKSTNPFGWPRIAISVYGVDGLGRDVIKGYGSVVIPTCPGKYERVVHMYAPVSSSLAQQLLAWIGGTPPEFFDSSFTAQGTGRDVTRVRACGTVRVTLNVLPRGLAAFGYD 197
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BLAST of mRNA_A-nodosum_M_contig12.36.1 vs. uniprot
Match: A0A7S1U2U9_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U2U9_9STRA)

HSP 1 Score: 252 bits (644), Expect = 5.620e-79
Identity = 114/183 (62.30%), Postives = 144/183 (78.69%), Query Frame = 3 
Query:  141 APQGPSNFFVMCTGQVEFGEFGGLDNLYCRYALSFGNDWYIIHGLDTGLSQIAQRVGGQDTAVVWNFPIDVTFKATNAFGWPRLALSVFRVDDLGRDTVVGYGSVLIPTQAGRYERAVHMYAPQPSSMLQRLRSWLSGAYPEFFDSKFVARGEGREVTRVKRSGAVKVSLDVMTRGMASFGYN 689
            AP  PS F +M TGQ+  G+F G DNLYCRY+L FG+DW + HG D+GLSQIA+R GG D A+VWNFPID TFK+TN FGWPR+A+SV+ VD LGRD + GYGSV+IPT  G+YER VHMYAP  SS+ Q+L +W+ G  PEFFDS F A+G GR+VTRV+  G V+V+L+V+ RG+A+FGY+
Sbjct:   15 APSAPSEFHLMVTGQIRSGDFDGADNLYCRYSLVFGHDWTVCHGPDSGLSQIARRGGGVDPALVWNFPIDATFKSTNPFGWPRIAISVYGVDGLGRDVIKGYGSVVIPTCPGKYERVVHMYAPVSSSLAQQLLAWIGGTPPEFFDSSFTAQGTGRDVTRVRACGTVRVTLNVLPRGLAAFGYD 197
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BLAST of mRNA_A-nodosum_M_contig12.36.1 vs. uniprot
Match: F0YE40_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YE40_AURAN)

HSP 1 Score: 229 bits (584), Expect = 1.460e-70
Identity = 111/190 (58.42%), Postives = 139/190 (73.16%), Query Frame = 3 
Query:  120 AGGEPQAAPQGP-SNFFVMCTGQVEFGEFGGLDNLYCRYALSFGNDWYIIHGLDTGLSQIAQRVGGQDTAVVWNFPIDVTFKATNAFGWPRLALSVFRVDDLGRDTVVGYGSVLIPTQAGRYERAVHMYAPQPSSMLQRLRSWLSGAYPEFFDSKFVARGEGREVTRVKRSGAVKVSLDVMTRGMASFGY 686
            A  EP   P+   S FFV+  GQVE GEF   D+LY RY  SFG DW ++ G++TGLSQIA++  G D +VVWNFP+D++FK+TNA GWPR+++SV+ VD LGRD V GYGSVLIP   G Y+R +H Y P PSS+ QR  SW +G Y EF+DSKFVA+GE REVTRV+ +G VKV  DV+TRGM + GY
Sbjct:    2 AASEPAGPPRKELSAFFVVVNGQVESGEFPD-DDLYVRYGFSFGPDWTVVDGIETGLSQIARKAPGVDQSVVWNFPVDISFKSTNAHGWPRMSISVYGVDGLGRDVVRGYGSVLIPPFPGGYDRYIHTYVPVPSSLWQRFVSWFTGTYAEFYDSKFVAQGENREVTRVESTGVVKVKFDVLTRGMETLGY 190
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BLAST of mRNA_A-nodosum_M_contig12.36.1 vs. uniprot
Match: A0A836CI87_9STRA (B9 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI87_9STRA)

HSP 1 Score: 225 bits (573), Expect = 2.360e-69
Identity = 109/161 (67.70%), Postives = 129/161 (80.12%), Query Frame = 3 
Query:  183 QVEFGEFGGLDNLYCRYALSFGNDWYIIHGLDTGLSQIAQRVGGQDTAVVWNFPIDVTFKATNAFGWPRLALSVFRVDDLGRDTVVGYGSVLIPTQAGRYERAVHMYAPQPSSMLQRLRSWLSGAYPEFFDSKFVARGEGREVTRVKRSGAVKVSLDVMTR 665
            QVE+GEF G DNLY RYALSFG+DW ++HGL+TGLSQ+A+R G    AV WNFPIDV  K+T AFGWPRLALSV+ VD LGRD VVGY SVL+P   G + + V+ YAP+ SS+LQR+R W++GAYPEFFD K VAR EGREVTRV+R G V+VSL VMTR
Sbjct:    9 QVEYGEFSGYDNLYVRYALSFGHDWTVLHGLETGLSQMARRSGSGGEAV-WNFPIDVALKSTCAFGWPRLALSVYAVDALGRDAVVGYASVLVPPTPGPHAQWVYTYAPKASSILQRVRGWIAGAYPEFFDPKLVARSEGREVTRVQRRGRVRVSLTVMTR 168
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BLAST of mRNA_A-nodosum_M_contig12.36.1 vs. uniprot
Match: A0A8J2WZC0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WZC0_9STRA)

HSP 1 Score: 225 bits (573), Expect = 2.320e-68
Identity = 104/178 (58.43%), Postives = 135/178 (75.84%), Query Frame = 3 
Query:  156 SNFFVMCTGQVEFGEFGGLDNLYCRYALSFGNDWYIIHGLDTGLSQIAQRVGGQDTAVVWNFPIDVTFKATNAFGWPRLALSVFRVDDLGRDTVVGYGSVLIPTQAGRYERAVHMYAPQPSSMLQRLRSWLSGAYPEFFDSKFVARGEGREVTRVKRSGAVKVSLDVMTRGMASFGYN 689
            S FFV+  GQ+E GEF   D+LY RY  SFG DW ++ G++ GLSQIA++  G D +VVWNFP+D++FK+TNA GWPR+++S++ VD LGRD V GYGSVL+P  AG YER +H Y P PSS+ QRL SWL+G Y EF+DSK VA+ + REVTRV+ +G VKV   V+TRGMA+ GY+
Sbjct:   55 SAFFVVVNGQLESGEFP-YDDLYVRYGFSFGPDWTVVDGIENGLSQIARKAAGCDNSVVWNFPVDISFKSTNAHGWPRMSVSIYGVDSLGRDVVRGYGSVLLPPFAGDYERYIHTYIPVPSSLWQRLVSWLTGTYAEFYDSKLVAQSDNREVTRVESTGVVKVKFSVLTRGMAALGYS 231
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BLAST of mRNA_A-nodosum_M_contig12.36.1 vs. uniprot
Match: A0A7S2BJK9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BJK9_9STRA)

HSP 1 Score: 225 bits (573), Expect = 3.200e-68
Identity = 104/185 (56.22%), Postives = 140/185 (75.68%), Query Frame = 3 
Query:  156 SNFFVMCTGQVEFGEFGGLDNLYCRYALSFGNDWYIIHGLD---TGLSQIAQR-VGGQDT----AVVWNFPIDVTFKATNAFGWPRLALSVFRVDDLGRDTVVGYGSVLIPTQAGRYERAVHMYAPQPSSMLQRLRSWLSGAYPEFFDSKFVARGEGREVTRVKRSGAVKVSLDVMTRGMASFGY 686
            S+F++M TGQVE G+FGG DNLYC+Y+ S+G+DW ++ GLD    GLSQIA++   G D     +VVWNFPIDV FK+TNAFGWPR++ +V+ +D LGRD   GYGS+L+PTQ G Y++ + MYAP PSS  QR+ + ++G YPEFFD+KFV++G  REVTRV+ +G+VKV + V T+ M  FGY
Sbjct:   28 SSFYLMITGQVESGDFGGADNLYCKYSFSYGHDWTVVTGLDGVTAGLSQIAKKGSAGMDNTFGGSVVWNFPIDVAFKSTNAFGWPRISFTVYGIDALGRDKTYGYGSMLVPTQPGHYQKEIEMYAPMPSSWYQRILNGITGTYPEFFDTKFVSQGSNREVTRVESTGSVKVQVQVATKDMQKFGY 212
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BLAST of mRNA_A-nodosum_M_contig12.36.1 vs. uniprot
Match: A0A7S1CLA7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CLA7_9STRA)

HSP 1 Score: 224 bits (570), Expect = 3.790e-68
Identity = 102/191 (53.40%), Postives = 136/191 (71.20%), Query Frame = 3 
Query:  114 NSAGGEPQAAPQGPSNFFVMCTGQVEFGEFGGLDNLYCRYALSFGNDWYIIHGLDTGLSQIAQRVGGQDTAVVWNFPIDVTFKATNAFGWPRLALSVFRVDDLGRDTVVGYGSVLIPTQAGRYERAVHMYAPQPSSMLQRLRSWLSGAYPEFFDSKFVARGEGREVTRVKRSGAVKVSLDVMTRGMASFGY 686
            ++ GG+      GPS FFVM TGQ+  GEF   + LYC++ ++ G DW ++ G   GLSQ+A++  G D  VVWN+PIDV+FKATNAFGWPRL LSVF VD LGRD + GYG++ +PT  GRY R V  + P  SS+ Q   +WL+G  PEFF+ KFV++GEGREVTRV+ +G V+V ++V+TRGM+  GY
Sbjct:    2 SATGGDDTGVSDGPSGFFVMATGQIRRGEFSDGEKLYCKFDVACGPDWKVVQGHAQGLSQVAKKAAGGDDGVVWNYPIDVSFKATNAFGWPRLVLSVFEVDALGRDVIRGYGALHVPTVPGRYTRFVRTFTPASSSLFQEFTAWLTGNRPEFFNPKFVSQGEGREVTRVRSTGVVQVDINVLTRGMSEHGY 192
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BLAST of mRNA_A-nodosum_M_contig12.36.1 vs. uniprot
Match: A0A5D6Y9W0_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y9W0_9STRA)

HSP 1 Score: 207 bits (528), Expect = 3.590e-62
Identity = 102/196 (52.04%), Postives = 139/196 (70.92%), Query Frame = 3 
Query:   99 TSQPGNSAGGEPQAAPQGPSNFFVMCTGQVEFGEFGGLDNLYCRYALSFGNDWYIIHGLDTGLSQIAQRVGGQDTAVVWNFPIDVTFKATNAFGWPRLALSVFRVDDLGRDTVVGYGSVLIPTQAGRYERAVHMYAPQPSSMLQRLRSWLSGAYPEFFDSKFVARGEGREVTRVKRSGAVKVSLDVMTRGMASFGY 686
            TS+    A   P AA    S F V+C+GQ     + G +NLYCRYA+++G DW ++HG D GLSQIA     QD  +V+NFPIDV+FK+TN FGWPR+ LSV+ +D LGRD V GYGSV +PT+AG   R V ++ P  SS++Q+  +WL+G+ PE+FD+KF+A+ +GREVTRV  +G V++ L+V+T GMA FGY
Sbjct:    8 TSKNAIDAANAPPAATLPTSGFHVICSGQ-----YPGANNLYCRYAITYGTDWRVLHGADAGLSQIAYT-SNQDDDIVFNFPIDVSFKSTNPFGWPRIVLSVYGLDALGRDVVRGYGSVHLPTRAGSSTREVPLFRPLSSSLMQQFTAWLTGSPPEYFDAKFIAQNDGREVTRVCSAGKVRLQLNVVTSGMAKFGY 197
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig12.36.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLY8_ECTSI2.330e-12773.91Endothelial protein B9 n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5KBF1_9PHAE3.850e-7964.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1U318_9STRA4.610e-7962.30Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S1U2U9_9STRA5.620e-7962.30Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
F0YE40_AURAN1.460e-7058.42Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A836CI87_9STRA2.360e-6967.70B9 domain-containing protein n=1 Tax=Tribonema min... [more]
A0A8J2WZC0_9STRA2.320e-6858.43Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2BJK9_9STRA3.200e-6856.22Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S1CLA7_9STRA3.790e-6853.40Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A5D6Y9W0_9STRA3.590e-6252.04Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig12contigA-nodosum_M_contig12:397570..403579 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FLY8
Preferred nameB9D1
PFAMsB9-C2
Model size1199
Max annot lvl2759|Eukaryota
KEGG koko:K16744
Hectar predicted targeting categoryother localisation
GOsGO:0001654,GO:0001701,GO:0001944,GO:0002065,GO:0003674,GO:0004888,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005929,GO:0006996,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007275,GO:0007423,GO:0007568,GO:0007610,GO:0008104,GO:0008150,GO:0008158,GO:0008340,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009987,GO:0010259,GO:0015630,GO:0016020,GO:0016043,GO:0022406,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0030154,GO:0030326,GO:0030537,GO:0030855,GO:0032501,GO:0032502,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035107,GO:0035108,GO:0035113,GO:0035177,GO:0035869,GO:0036038,GO:0036064,GO:0038023,GO:0042733,GO:0042995,GO:0043009,GO:0043010,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0048513,GO:0048598,GO:0048731,GO:0048736,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051640,GO:0051641,GO:0051716,GO:0060089,GO:0060173,GO:0060271,GO:0060429,GO:0060563,GO:0060756,GO:0061512,GO:0065007,GO:0070727,GO:0070925,GO:0071840,GO:0072358,GO:0072359,GO:0097711,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:0140056,GO:1904491,GO:1905515
Exons8
Evalue1.13e-130
EggNOG OGsKOG4027@1|root,KOG4027@2759|Eukaryota
Ec32 ortholog descriptionB9 domain
Ec32 orthologEc-22_000220.1
Descriptionhedgehog receptor activity
Cds size759
COG categoryS
BRITEko00000,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig12.36.1prot_A-nodosum_M_contig12.36.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig12 397578..403147 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866618.7801697-UTR-A-nodosum_M_contig12:397569..3975771680866618.7801697-UTR-A-nodosum_M_contig12:397569..397577Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig12 397570..397577 +
1680866618.9592285-UTR-A-nodosum_M_contig12:403147..4035791680866618.9592285-UTR-A-nodosum_M_contig12:403147..403579Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig12 403148..403579 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866618.7966678-CDS-A-nodosum_M_contig12:397577..3976031680866618.7966678-CDS-A-nodosum_M_contig12:397577..397603Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig12 397578..397603 +
1680866618.8797283-CDS-A-nodosum_M_contig12:399118..3992031680866618.8797283-CDS-A-nodosum_M_contig12:399118..399203Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig12 399119..399203 +
1680866618.8918185-CDS-A-nodosum_M_contig12:399533..3996141680866618.8918185-CDS-A-nodosum_M_contig12:399533..399614Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig12 399534..399614 +
1680866618.9049232-CDS-A-nodosum_M_contig12:401295..4013641680866618.9049232-CDS-A-nodosum_M_contig12:401295..401364Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig12 401296..401364 +
1680866618.9160373-CDS-A-nodosum_M_contig12:401848..4019801680866618.9160373-CDS-A-nodosum_M_contig12:401848..401980Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig12 401849..401980 +
1680866618.9255993-CDS-A-nodosum_M_contig12:402325..4024901680866618.9255993-CDS-A-nodosum_M_contig12:402325..402490Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig12 402326..402490 +
1680866618.9364362-CDS-A-nodosum_M_contig12:402729..4028291680866618.9364362-CDS-A-nodosum_M_contig12:402729..402829Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig12 402730..402829 +
1680866618.9457986-CDS-A-nodosum_M_contig12:403046..4031471680866618.9457986-CDS-A-nodosum_M_contig12:403046..403147Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig12 403047..403147 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig12.36.1

>prot_A-nodosum_M_contig12.36.1 ID=prot_A-nodosum_M_contig12.36.1|Name=mRNA_A-nodosum_M_contig12.36.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=253bp
MTSLSALTRTVTRDKGGFGKNAGSADPFNRTSQPGNSAGGEPQAAPQGPS
NFFVMCTGQVEFGEFGGLDNLYCRYALSFGNDWYIIHGLDTGLSQIAQRV
GGQDTAVVWNFPIDVTFKATNAFGWPRLALSVFRVDDLGRDTVVGYGSVL
IPTQAGRYERAVHMYAPQPSSMLQRLRSWLSGAYPEFFDSKFVARGEGRE
VTRVKRSGAVKVSLDVMTRGMASFGYNNPEATYGSYNGQEVEPTPARPFS
TP*
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mRNA from alignment at A-nodosum_M_contig12:397570..403579+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig12.36.1 ID=mRNA_A-nodosum_M_contig12.36.1|Name=mRNA_A-nodosum_M_contig12.36.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=6010bp|location=Sequence derived from alignment at A-nodosum_M_contig12:397570..403579+ (Ascophyllum nodosum dioecious)
GGATAGCGATGACTTCTCTTTCTGCCCTGACCAGGTGCGGCAAGGCGCAG
TCAGTCGCTGCCTCGTTGGTACTTCCATCTTCTTTATATGCGAGCTATTG
TGGCGAGAGTGGGAAAGATCGTGAGCATCTTCGTAGTACGTCCAAAGTGT
AACACCCCTTTAAAAGTATCTATTATCTGTAACATTTGACATTCATTCTA
CTTCTTTATTACATAAAGTACCATAATAATAATAGCCCGAAGGACATGGC
TGGGACGAGAATCTCGCCAATCTTTTGTATCTAAGCGATGAAGCACCACG
CCGCATATTATACTGTATACTATTAATAGTATTAAATAAGTGctctgctt
attgcaCTATTATACGACCATCATGATTGTCGCCCGAGTGGTCTACTAGT
AGGTAACCACGTACGTACACCTACTAGTTATTAATAGTACGGAAGTCGTG
AGTTCGATTATTTTGTGAAAACCAGAATTTGTGTTTTTTTGCTTCCGTAG
CGGAAAGCGTGAGAACGCGAGGAAGTAAAGTTCAACTATTAGTTGGCGAG
TTGTAAGAATGCTGAACTTGCATCGCGATAAAATGAAATTGAGACGAGCA
CCGGGGAGAGATGGGAAGATCCTTCGTGTCCACAGGCAGGCTGGCAACGT
TGCAGTAGGTGGGATCGATaacAACCTAGCACGTTGAGGCCCATCGGCAA
TAAGTGAGATACAAAAATCAAGCAAACTGTTAGTCGTATCTATAGGAGTC
ACCAGATTCAGCCTGAGTATGAAGATGAGCAGGCTGAGGCGGGACGGGAC
TGCCGAACCCGTCTCGCGAGACCAAATTCTCAGGCGCGAACGGGGGCAGG
GAAATATTAATTTTCCCTGTTCAGCTGAACACGAGCAGGATTGGCAACCT
TACCCGGTTGATCCTCACTCTTGCTACACGCGATGACCATAAATACATAC
AAACATACTTGAGGGAATATCTCCACTGTATATATACACACCTACTACGT
ATTATATAATATCGCCAATCGCCAACTACACCCAGGTGTGCTGCAAGTTA
CGAAAGTACGAGGTGGATGATGCGATATTATGCAATTATATTATATTACA
TTATATTATATTATCTAGACGAAAGGTGGAGGAGGCAGGTGACTATTAAT
TGTATTAATATACTCCGTCGTACTAATGGATTAATGTATTAATGTATTAA
TAATGTGTATTAATAATTTAAATGTGTATTAATGGATTAATGCATTAATG
GATTAATGGATTAATACATTAATACATTAACGGATTAAAGTATTGGTTTA
ATGTATTAATGCGATGTAGTAAACATATATCTCAAATAGCACTATTAATA
CATAATATAGACTCTAAATCCGTAGCGACGATGATCAAGATATGTGCTCA
ATCGTTTCCTCTCCGACAAGTCAGCATGTACGTGCATACATTTACTACAT
GATGAGAGCTATCCCAACCAATCCTTTCGGTATcagCAAGTACTTACTCT
ACTATGGATATTATATTATTATTTTGTACCTGGTACACCAATCATGCAGG
ACCGTAACACGAGACAAGGGCGGTTTCGGAAAAAACGCGGGCAGCGCGGA
TCCTTTCAATAGAACGAGTCAGCCGGGGAACTCGGTAAGTGTCTCAAACT
CGGTCGGCACCAGAGTGCGCCATGAACATTGCGAGTCACATGGTTGCCTA
GAATACGAACCTCCCCCGGGTGGCCGCCAGCAACATGTTTGTTGCTGTAG
TTCTGACATCGCCTGTATAAGTTTAAATATCTTCAAATAAAAAAATAAGC
CTGCAGTATTTCATAGTTGTATTTACTTATTTCCAAGACTTGTTTATGAC
GGGAAAGCTTTAAGCTTTAACATCGTCGCGGAAGGTCAAATAGTGAAACG
CGACGCTCTGCTAAACATTTTATTATATTATTTATTTAATAAATGTATAC
TACACATGGCGCAGGCGGGAGGCGAGCCACAGGCGGCGCCACAAGGACCA
TCTAATTTCTTCGTCATGTGCACGGGGCAAGTGGAATTCGGCGAGGTAAT
AACACGTTTTTTCCTTTATTTTCCAGGTGCGAGACGTATTCTATCTATAT
ATTATGGTAAGCGCAAGACGCCCGCAGGTTCAGCGTCGCTGAGAAGGGTA
TGGGCCCGAGAGGCTGGTAACACCCCTGTGCCCATTATCCTATTCAATGC
ACGCCTACCCCACCCTAACAAAGCAATCATATTAGCATAGCTCTAATAGT
GGAGGCTGAGTTATTTTATATCAGCCTTCGAGTAAAGAAGCCCGCGGTCG
CAGCGATGGTGAAACCATTCAATGCCGGACAGCGACCAAGGAAAGAGAAA
CTAAACGGGCACGTATTTTCGTGTGTGGAGCTTCAAGACCTAGCTAGCCG
TCTCGCAGAGCAGCAGCAAGCAGCGTTAGAAGTGTCTAGCAGCTCGAGCG
TCGCTGAGCAGGGTGGGGGCTCGGGAGACCATCAAAACCCTTGTACACAT
CTCATTGCACACCTTTCCTCAGCGCCCCTACTATACTGTACCCTCCTAAT
AAATAAAAGCAATCCTAAGTAAAGAGGCTTTATATCGCTGACTTGTTTTA
TATCACCCTAAGTAAAGAAGATCGCTGAGTTCAAAGAGAAATCTGAACGC
AAGCAACTAGACCTTATCACCCAAAGTAAAAAAGAGGATCGCTGAGTTTA
AAGAAAAATCTGAATGCACCTAGACCTTCTGAGCAGTTGTTTTATAGCAC
CCTCCTAGGTAAAGAAAATCGCTGTGTTGTTTTATATCACCCTGAGTAAA
GAAGCTCGCTGACTTGTTTTATATCAACCTACTTCATACCAATAGTGGGT
GTGGGAAAGAGAGACGCATATTAGTTGGTCCATGGTGACCTGCCAAGGCA
GCACTCGTTTGGAACTACCTTGAGGTTTACTGGCCCTGTGCTGGCGGACT
CTCGGCAGTGAACGCCATCGGTACGCAATGGCGTGACTCGATAAACTCGG
GACTGACCCGATGGCGTATGGCGTTTTTTTTATAAATGGACGCCGCCGCG
GAAATCGGGAGGAATCCCGTAAGTAAGCACCATATGCAGCCTGAGTATGG
AGATGAGCAGGCTGACGCGGGACGGGACGGCTGAACCCGTCTCGCGAGAC
CAAATTCTTAGGCACGCACGGGGACAGGGGAATATTCATTTTCCCTGTTC
AGCTGACCACGAGCAGGATCGGCAACCTTACCCGGTCGATCCATACTCTG
CTATATGTGATGACCATCCATCCATATATACATACATACATACATACATA
CATACATACTAAGTAAAAAAGCTCACTATCGCAGCGATGGTGACCCCATT
TGTCGTCCGAACAGCGAGCAAGGAAAGAGGCACGAAACGGGCACGTCTTT
TTTTGTGTGTGGCTTTAAGACCTTTTCATTATTAATACTAGGCGTTTCAC
AGAGCAGCAAGCGTTAGAAGTAAATAGGAACAACGCCGAATCAAGCCGTG
AAAATGTCAACCATTCTGAATACGATACACCTGGCTGGGCTACTAATAGT
ACATTCGAGAGACACAGAAAACGTCGCACCATGGTTGATGTACAAAACGC
TAGCCTTGCGCCGTCGACTGAGTGTTACGGAGGTACACTGTTAATTCTTT
TTAAAGCCTTAAGTGCAAGTACAAGTTCCTTATTCAGCTGTTCGTGAGTT
TTTCTCGATCCCTTGACGTTCCACAGTTCGGGGGACTCGACAACTTGTAC
TGCCGTTACGCCCTTAGCTTCGGGAACGACTGGTACATCATACACGTGAG
TAATAATATCATCGTAAGACATCGCATACATACATCCGGACCAATGCCCG
AGTCCCTCGCCTGCCTAGCTTTCACAATTTTCCTGTTTAAAGACAAGTCT
GAACACATCTAAACCTTCTGAGCATCCCCCAGACAGGGGGGGGAAATGTC
AACACGTTTGGGTGGGAACATATCATAGGCGGCAAAGACAAAACCTCTTC
ATGTTTGAGAGAATCGATGAGACCAAGAGTAAAGAGCGGACGAACTCAGC
AGGGATGCTGCTAAGAGCAAGACAAGAAGGCTGCAACAGTCGATGGTCTA
GGCTGGCCATGCGATCGTTCCCAGCTTAAGTAACTCTTTGATCCTACAGT
AAAAATATTGGACATCGTGAAAATACTAAACGCCGGCGAAAAGAACGCGA
TGAGCATCGAGCAACGAAGCATTGCCTTGAGCGTGATTCCCCGTGCGATC
ATGCTTATTTTCTGCTTATTGTTGCACAGGGTTTAGATACAGGGTTGTCC
CAGATAGCCCAGCGGGTTGGAGGGCAGGACACTGCAGTGGTGTGGAACTT
CCCTATCGACGTCACCTTCAAAGCTACCAATGCCTTTGGTTGGCCTCGCC
TTGCCCTCAGCGTGAGTTTGAGCTGTGGTTGCCTCGACAAGGCGATCGAC
TACCACCGTCACCATGGTGGTATATATTTTCGTCCACCAGCAGTGACAAC
TAAAATGAGCGTCTTGTTGTGCTCATACCTACTAATACCAGTATTGAGAG
CTATTTTCATCCGCCGGTAAACTCTTTTTATGGTTTCCTCGTTCACCGGC
AAAAATCCTACTTTCAGCGTTATCATTGAGGCGTCCCTCGCTCTTCGGCA
GAGCAGACCCATGGGTACGCCAGTATTAAAAGGTGTGCGCACTCTAAGCC
GTGTGAGCCCTCAAGAATGTAAAAATATTGCGTAGTAACCCCTCCGACCG
TGCCAGGTATTTCGAGTTGATGATCTGGGGAGAGATACGGTCGTCGGATA
CGGCTCTGTCCTGATTCCAACGCAAGCAGGACGCTATGAGAGGGCAGTGC
ACATGTACGCGCCCCAGCCATCGTCAATGCTTCAAAGGCTGAGGTCGTGG
CTCTCTGGCGCCTACCCAGAGGTGAACATCATATCTACACGATACTGTGT
ACGGTATTTACAGAAGGGTCAATCCTTCGACGACGCACCAAGCGCGCACA
CCGTGTCGTAGGTTACACAACAGGGCCTCGCAAGCGCCATCATGCAGACA
TGATCATTGAACCTGCTATTTCATACCGGTAAGTCATCCACGGCTGGCGC
CTACGCTTGCTACAGTCATTTACGCCCTCACGCAGGCATCCTTGTGCGCA
CCACACGCAGTTCTTTGATTCCAAGTTTGTGGCACGGGGCGAAGGAAGAG
AAGTCACGAGAGTCAAGCGCTCGGGCGCGGTTAAGGTATCTCTCGACGTC
ATGACCAGAGGTGAAAAGAGGGTCAGGTTAGCTTGTTCGAGAGCTGATTG
CTCGGCATCTGAAGCAATGAGGCTCGTTGTGATGACAATATTTTTCACTA
CGCGCTAACCGGAGGGACCTCAAATAATTTACATTTGTGAAGGACGGCTG
GGGTTTAGCTTCGATTACCCTAGATAGGTTATTGTGATCCAGGTTCTCCA
ACAATTATTTCCCCGAATGGCGTGCAGGTATGGCAAGCTTCGGCTACAAT
AATCCGGAGGCGACATACGGGTCTTACAACGGGCAGGAAGTGGAACCGAC
CCCCGCACGGCCCTTCTCCACCCCGTAACCGGTCGTCCTTGGTATTCGGC
AAAGCATAGCTGCAGCCTCGAATTAAGTAATCAACTTAGTGGTGAAAATA
CCGTTGGATGGGCATATTCATCACGTACTGGGGGAGCGATGGACTACGCT
CAGACTGACTGAACACGTCTTGAGGGGGGGTGTTTAGGCTCGAGAAATAC
GTGAGATCGACCAACAGCCGCAGCCCTCCCGTCTATCGTGCAGCGTGATC
CTGATATTACGCCTTGGTAAGCGACCGGTGTTACAATTTATAGTTAACTA
TTTGGAGGTAGCAAAAGGAGACGACCTTCCATGCCCCGTCTCTTCCTCAA
GGCAATATCATGTTTGAGAACATTTCAGCGATGATCGGAAGTGCTCCACG
AGTCCCTGCCGTTGTGCACTCACAGAATATTATGTTAATTGTTACTTGTG
TTATCAGTGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig12:397570..403579+

>mRNA_A-nodosum_M_contig12.36.1 ID=mRNA_A-nodosum_M_contig12.36.1|Name=mRNA_A-nodosum_M_contig12.36.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=759bp|location=Sequence derived from alignment at A-nodosum_M_contig12:397570..403579+ (Ascophyllum nodosum dioecious)
ATGACTTCTCTTTCTGCCCTGACCAGGACCGTAACACGAGACAAGGGCGG
TTTCGGAAAAAACGCGGGCAGCGCGGATCCTTTCAATAGAACGAGTCAGC
CGGGGAACTCGGCGGGAGGCGAGCCACAGGCGGCGCCACAAGGACCATCT
AATTTCTTCGTCATGTGCACGGGGCAAGTGGAATTCGGCGAGTTCGGGGG
ACTCGACAACTTGTACTGCCGTTACGCCCTTAGCTTCGGGAACGACTGGT
ACATCATACACGGTTTAGATACAGGGTTGTCCCAGATAGCCCAGCGGGTT
GGAGGGCAGGACACTGCAGTGGTGTGGAACTTCCCTATCGACGTCACCTT
CAAAGCTACCAATGCCTTTGGTTGGCCTCGCCTTGCCCTCAGCGTATTTC
GAGTTGATGATCTGGGGAGAGATACGGTCGTCGGATACGGCTCTGTCCTG
ATTCCAACGCAAGCAGGACGCTATGAGAGGGCAGTGCACATGTACGCGCC
CCAGCCATCGTCAATGCTTCAAAGGCTGAGGTCGTGGCTCTCTGGCGCCT
ACCCAGAGTTCTTTGATTCCAAGTTTGTGGCACGGGGCGAAGGAAGAGAA
GTCACGAGAGTCAAGCGCTCGGGCGCGGTTAAGGTATCTCTCGACGTCAT
GACCAGAGGTATGGCAAGCTTCGGCTACAATAATCCGGAGGCGACATACG
GGTCTTACAACGGGCAGGAAGTGGAACCGACCCCCGCACGGCCCTTCTCC
ACCCCGTAA
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