mRNA_A-nodosum_M_contig12.129.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig12.129.1
Unique NamemRNA_A-nodosum_M_contig12.129.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig12.129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig12contigA-nodosum_M_contig12:1687993..1694485 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size288
Hectar predicted targeting categoryother localisation
Exons2
Cds size228
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866616.4772713-UTR-A-nodosum_M_contig12:1687992..16880521680866616.4772713-UTR-A-nodosum_M_contig12:1687992..1688052Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig12 1687993..1688052 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866616.4871454-CDS-A-nodosum_M_contig12:1688052..16881751680866616.4871454-CDS-A-nodosum_M_contig12:1688052..1688175Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig12 1688053..1688175 +
1680866616.4980385-CDS-A-nodosum_M_contig12:1694380..16944851680866616.4980385-CDS-A-nodosum_M_contig12:1694380..1694485Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig12 1694381..1694485 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig12.129.1prot_A-nodosum_M_contig12.129.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig12 1688053..1694485 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig12.129.1

>prot_A-nodosum_M_contig12.129.1 ID=prot_A-nodosum_M_contig12.129.1|Name=mRNA_A-nodosum_M_contig12.129.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=76bp
MFAKSIKLCCILHSQIQKHGAIKERKATRGGLSTPSSLQMKSLVVLSSPE
VAVLVQMMVQRVWRPLAALKAKGER*
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mRNA from alignment at A-nodosum_M_contig12:1687993..1694485+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig12.129.1 ID=mRNA_A-nodosum_M_contig12.129.1|Name=mRNA_A-nodosum_M_contig12.129.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=6493bp|location=Sequence derived from alignment at A-nodosum_M_contig12:1687993..1694485+ (Ascophyllum nodosum dioecious)
CCATGAGACAACGTCAAACATGTGGAAACAGCTTTTCACAAGAAGTAATC
GAAGGAAAACATGTTCGCCAAGAGCATTAAATTATGCTGCATTCTTCATA
GCCAAATCCAGAAACATGGCGCTATTAAAGAGCGGAAGGCAACTCGCGGG
GGGCTCTCGACTCCATCCTCGTTGCAGATGAAGGCAAGAAAGTTCGGAGC
TCTTTCGTCGGAATACTCCTGGTGTAGTTTTGTGCTTTCACGTATAGAGC
TATATGATTCCAGCTGTGCACTAATCTCAACCTAAAGTGCTCCCCTGTTG
AACTACAACTCTGTTTTTCAGTAACACAGACGGTGAAGTAGTTTGGTAAC
CTTTCTGCGTTCCACGATGAAGACCGAGTGGTCGCAGCAGATTCGGCGTC
GTAGGGATGGTAACCTGAGTCTTTTCATAGGCTGTACATCGGTACTGGAG
AGTGTGTATTTCCTGAGAATGGATATCTGGTGATTCCGACTTCTAGACAG
GAAATGTGTGCGTGCCATATGTTTAGCCTTGTCAGTTGTCTTATCCTTGT
ATAATAGGAGAGAGGTGATGAGGGCATCTACTATACTACTGTCTGTACAA
CAGATACAACACTTGTGAATTGTAAGACTCCCTCCTGCAGATGACACCTA
CTACTACTATACTAGTTTAAAGAAAAATCTGAACGCATCGTTGTTGATGA
TAAGTATGCTTACCGGTTTCGGTCCAGACGGTACTCTTCATGCGCAGCTT
CGTGTGCAGGTCTCCGCGCGTTCCTCTCCCTTTGTACAACTTCTCTCCGA
CGAACCGGTGTTTCGTCGTTATGTGGGTTTTGTGGAGGCCCGACCTTCGT
GTTACTTTACACTACTAGCGAAGTCGGCGGCGCATTACATTCAGACAGGA
TGTGTTCACTCGGTTTCAATCAAGAGTTCTTCCGTTGCATGGTTGTCCAA
AGAAAGACGAGGAGCTTTGACAGAAAAAGACATGATTTCCGCTGAAAGAT
TAAAAACCAAAAACGTTTATCGGAAACAAATAACGGCTCTTAAGTAAAAA
AAGTTGCAGTCACCGACGTCAACACTATCGGCGACGTCAACCTTTAAATT
ACTGCACGACCTGCCCAAATACACTCATCTCGAATCGGAACGTCATGAAC
TGCCCAAGCCTCCGCCTAGCAGCTACCTCTCCCCTAATCCGTCGCTAGAG
CTTGCTACTACCGCCGACGTTGGAAAACATTTTCATTTTCAAGTATATCA
GTTTTATTTGAAAAGCTCAACTTCCGATGCCTACAACACGAAGAACTTAT
TACTAAACTGTTCTTCCTAAAAGTGTATAAGACTCGTCCTGAAATGCAGA
ATTTCTTTAGAGATTCGTGGTCTATCGTTGGACATATGTACTTGTACTAC
CTGTTGTGGGTCAATCCTGAATGGATACATGTATCATATGTCCCTCTCGT
ATCGGTGTCCCCAGACAGGAAACCGTTTGGGTTCTCCATAACATTAGGCT
GTTGGCCCTACAATATGCGACCACCGTTGGGGAAAACGACCGTATTCTAT
CGTCGGTAGTTTTATTAACTGCCTTTAATTATATACGTTTCGACCAATAT
TCCCCTGCGGAATCCGACGCAAGCATGCTCGGAACACAGGTTTCGGTTCA
GAATTTTGCCGAGACCAATCAGCATAGCCTGCAACCGCGGACAGGGAAAT
TTGTTTTGCCTGTCCAGCTCACCACGAGCAGGATTGGCAAACTTACCCGG
TTGATCCTGACCCTTGCTAAATGTGTGACCATTCATATACATACATATAC
ATACATTTACATACATACATATACATACATACATACATACATACATATGT
AAAGTAGAGAGAGCGTGTCCCCTTTGTCGCGTCTGATCAGAGGTTTTCGT
AATAAGTATCATTGATCCCCCCTCGGGAGGATCAATGCGAGTGGCATAGA
ATGACTAGGATGACAGGGCCGGATTGCGTGGTTATGTGTGTGTGTGTGTT
TTCTTCCCATTCATTCTGGACATCAAGTTTGTTGGACGTACCAGCCGGGG
TCACACAGGAGGAAGGTCACACAGGATTTTCAATCCACCTTCCTTCTGCG
GTGCGTGCCTTGATTTTTGTCGCGAGAAGGATTCAGCCATTCCTTTCCCT
CGTCGACCGTGAAGTCGAATTTTGTGTACTAACGAATTAATCGTTCTCCA
CCCGTTGGGCATTTTTTTTTtgGTTTTTTAGTTTTTAGTGACAAAAATCC
CGTTTGCCGGGATCGAACTCACGTCCCAACGTGTCAGAAGGTTACGAGGT
GCCAACTGAGCTACCGGGGTCGACCGGCTCATGTGCAATTTAATAAATAC
ATACATACATACATACATCCGCCGGTACTTTCAACATGCCCACTTCATAC
CAATAGTGGGTGTGGGAAAGAAAGGCGCATAGTAATTGGTCCATGGTGAC
CTGTCCAGCAGGCAGCACTCGTCCGAAACTATACCTTGAGGTTTACTGGC
CCAGTGCCGACGGACTCTCGGTAGAGAACGCCATCGGTACACAATGGCGT
GACCCAATCGGTACGCAATTGCGTGACCCAATGAACTCGGGACTAAAACC
CGATAGCGCATGGCGGTTTAAAATAAATAAATGGACGCCCGCCGCGGAAC
TCGGGAGGAATCCCGTAAGTAAGCACCAGATTCAGCCTGAGTTTGGAGAT
GAGCAGGCTGACGCGGGACGGGACTGCAGAACCTGCTTCGCGAGACCAAA
TTCTCAGGCGCGAACGTGTGTTTGTGTGTGTGTGTGTTTTCTTCCCATTT
ATTCTGGACATCAAGTGTCACACAGGATTTCTCATCCACCTTCCTTCTGC
AGTGCTTGCCTTGATTTTTCTCGCGAGAAGGATTCAGTTATTCCTTTCCC
TCGTCGACCGTGAAGTCGATTTTTTTGTACTAACGATTCAATCGTTCTCC
ACTACTACTTGTTGGGCATTTTTCACTTGAGACTAATATATTAATAGATA
AACGATTGCGCAGAGTATGTTGCTGCTGAGACGTACCCCCAAGACCTAGG
TGGAGGCAGAAAGCTTGCTGTCTTCCGCGGTCACCACGCCATGGCTTTGA
GTGACGATGAGACCGCGGAGATGAGGAGCACCACGAGTATTGGTCACATT
TTGTGATGTTTAGACTGCGCTGCCGCGCGAGAGGGCTATTATACTGTACT
GTGATCCTCGTCGAGATGTTTGAAAATGATAACGATGGCAAACCTCCGAA
GCGCAGTTGGAGTGCGTTTGAGAGCCCGTACTCTCTGTTGTTGTTGTTGT
TGTTGTTTTCTTCACATTAACCGATCGGGCCTCAACCGTACCCAGTAATA
TACGTGGTTGCCAATCCGGTACGTGGTCTGCTGGACAGAAAAATATCAGA
GGAACATCTACCAAACTCCAATGAGAGCAAAAGAAAAACACAAACATGCT
CAGAAGGTCTAGGTGCGTTCTGATTTTTCTTTAAAAACGACAAAGAGAAA
GGAACAAGAATAACAAAATACACATGCCAGAAAAAGATAGACGAAGGGCA
CTCGATAGAGAGAGTTTGGCATAGTGCCAGCCGCGAGCCATCCGATACCC
TCCCCGGATCGCAACCATGCACCCAAACGCGTAGCATCTACCACATTCCG
TACTCTCAGGGTTTCACTTTTCACTAACGGCACATCGACGTCGCTTAGGG
AGTCCTTGATTGGTTGGTCTAATCAACGCGGTTCGAAAACGTCTCAAGCT
TACTACAGTCACTCCAGGTGCAACCTCAACCTTGTCCGCCTCTTCCGCTT
CTCTCTTCTTCTGCCGTTGATTGGACGCATTTTCTTCTTCCCTCACCCAC
GCGGCCATAAACCTACAACCCCCTTCGTGTACCTTGTTACTGTGGGTGTG
GGAAAGAGATACGCATATAAATTGGTCCATGGTGACCTGCCGAGGCAGCA
CCCGTTTGGAACTACCTTGAGGTTTACTGCCTTGTGCCGGCGGACTCTCG
GCAGTAAACGCCATCGGTACGCAATTGTGTGAGCCGATAAACTCGGGACT
GACCCGATGGCGTATGTGTGTGTGTGTGTTTTTTCCCATTCATTCGGGAC
ATCAAGTTCGTTGGACGTACCAGCTGGGGTCACCCAGGAGGAAGGTCACA
CATGATTTTTCATCCACCTTCCTTCTCGCGGTGCGTGCCTTAATATTTCT
CGCGAGAAGGATTCAGCCATTCCTTTCCCTCGTCGACCGTAAAGTCGAGT
TTTGGTGTACTAACGATTTAACCGTTCTCGACTCGTTTGGCGTTTTTATT
TTTATTTTTTATTTTTTAGCGAGAAAAATCCCGTTTACCGGGATCGAACT
CACGTCCCAACGTGTCAGAAGGTTACGAGGTTACCTCTGAGCTACCGGGG
CGACTGTTACATGGCGATTTAAATAAAAAGCTGTAGTCTACTATCTTCTT
AATAAATGGACGCCGCCGCGGAACTCGGGAGGAATCCCGTAAGTGAACAC
CACCAGATCCAGCAGCCTGAGTATGGAAATGAGCAGGTTGACGCGGGACG
GTACTGTCGAACCCGTCTCACGAGACGAAATTCTCAGGCGCGAACAACGC
GGACAGAGAAATATTCATTTTCCCTGTTCAACTAACCACGAGCAAGATTG
GCCACCTTACCCCGTCGATCCTTACCCTTGCCATATGTGATGACCATATT
ACTTATACCAGGTACCGATGTACTCAACACGGAGTTATGTATGTACGTGA
CGTCACCACCACACATACTAGAATGTAGAAGACTGTGATCGTAGACCCAG
GAACCGATGTGTTTAGCTTGTATATTGGAGACATACAGACAGCGTCACCT
GTTAAGAACCGCATATTTTGCTCGAGGCTGGCGGCTTATTGACCGCCCCA
AACCGAGCACTTGTTCTTATTTGCCATGTTCTTATTTGACCATACGTTTA
CCGCCCCGATGTTCGGGGTGCTTGTTCTTATTTCAGTACAGCATGTCGAC
ATGCCCCATAATGCTGTGCAGTACTGTATGCTGCGCAGTACAGCAGTAAG
TACTGTACTGCTGTGTAAACAACAATGTTCTTATTTCCTGAGTTCCATTT
TTTTTTGTCATTCACTTGTGTCAGCGCCACGAGTTGCCTTGGCCGCGACC
GTGAATCCATCGCTTTCTAAGTCGACATCTTTGTACCGCTTCGGCTGAAG
AACGAACGAAGCCCCCCCGTGGTGTGGTCGAATGTCACTCGCCAACAATG
TCCAGGACCGGCGTGTTCCACGGCAAGATCCTGCCACCGTCACCCTTCCT
AGCATCCGTCGCAGCCGCATACCTTTGTACATGTTCGCCGTGCTGTGCAT
GGTTTTCACGTGGATCCCAAGGCCTTGCTCGTTCACGAAGGTCATGTGGC
AGTGCCGGCACGGTAGACGGGGTGACGGGGGCGGCGATCCGAAGTTAACA
TAAGATACCTTCTCTTCCACGCCACGGCGAGTCCGCGTAACCTGTACAGC
AGGGTGGGCCGGACATACAGGTACATGGCAGGGAGTCATGAGGTGTTACC
AGAAAGCGCGTTTAGGCCTTGAAAAAGCGAGCAGCTTGTACGTAGCACTG
CTGTACAACAGCAGAAAGGTGCGGTACTCTGTACTGTACCCCTGTACAGT
ATTATACTGTACTCCGTATGATATAAGTGTTATACGTACAGCAGTACAGT
GCAGTAGAAGAAAGTTCATAGAATGTGGAATGAACAGGGTCGGGTTTTTT
CCTACGATGAACAATACCGCAGTGTGACATGTACATACTGCTGTAGTGCT
GCTGTTGTACAGTACAAGTATGATACTGTACATGCAGTACTGTACTCTGT
TGTGCTGTACAACACAACGCTACAGAGTACACACAAACTGCACTACTGTT
GTAAAATACTTGTATTATATAATATATACACTGCTGTACAGTAATACATA
CTGTATCGGTACTTCACTGCCGTGGTGTACAGCTGCTGTACTACTGTACA
GTGCTGCTGTAGTACAGCAGTAGTCTATACCGCAGTACAGTAGTAGTACT
GCTACAGCAGTAGCTGGCCCAAATTGGCGGAGGCTGAGTTTCTTGTTTTG
TGACCACAATGAGAGCACGCGATTCTTAGCTATCATATAGGATTTGGTGT
GGCGCCGGCCGTTTCAGCCTCTTTTCTCTTTTCTCCGCCGCATTTCAAAT
TTTTTCTAGTTTTCAAAAATCTCAGCCTGACTCTCTTACTGCTGTACGTA
CTGCACAGCAGTACTACGCTGTACACCTCCCATGACTCACCGGCTTGCCG
CTGCCCTTAGCAAATGCATTGATGATGTTGCCGGTGCCTTTGGTGGCTTT
CCCCATGCGTCCCTTCCCTCGATTCACCGCTGCAGCAGTCGCTGGTCGTG
CTGTCTTCTCCCGAGGTAGCGGTGCTGGTGCAGATGATGGTGCAGAGGGT
GTGGCGGCCGCTGGCTGCGTTGAAAGCGAAGGGCGAGCGCTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig12:1687993..1694485+

>mRNA_A-nodosum_M_contig12.129.1 ID=mRNA_A-nodosum_M_contig12.129.1|Name=mRNA_A-nodosum_M_contig12.129.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=228bp|location=Sequence derived from alignment at A-nodosum_M_contig12:1687993..1694485+ (Ascophyllum nodosum dioecious)
ATGTTCGCCAAGAGCATTAAATTATGCTGCATTCTTCATAGCCAAATCCA
GAAACATGGCGCTATTAAAGAGCGGAAGGCAACTCGCGGGGGGCTCTCGA
CTCCATCCTCGTTGCAGATGAAGTCGCTGGTCGTGCTGTCTTCTCCCGAG
GTAGCGGTGCTGGTGCAGATGATGGTGCAGAGGGTGTGGCGGCCGCTGGC
TGCGTTGAAAGCGAAGGGCGAGCGCTGA
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