mRNA_A-nodosum_M_contig1197.16.4 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1197.16.4
Unique NamemRNA_A-nodosum_M_contig1197.16.4
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1197.16.4 vs. uniprot
Match: D7G7Z3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Z3_ECTSI)

HSP 1 Score: 588 bits (1517), Expect = 2.940e-198
Identity = 301/497 (60.56%), Postives = 366/497 (73.64%), Query Frame = 3
Query:   45 MIRTAPLVWGCSIVLVVAWLLVGIHDANVAGYPNEIEPKVP-----REGGWG-HFGNLQR---------NEILKERELKNHGVLKKKLTMRGVSVDRSNIVDPITMQDLEAPLGRLWIPAAITGPIEPNKVD-PLANVLVAYCQLDMAAYHKSPWMFAMGTFHQRQSGCLDDKSLVRTFRFSSLKRLVDENPNAFMDPSGFIYHETRCGSTLTANMIAAIPSNIVHSETPPPVAVLNLCSGEGKCSDDLRDQLVRTMFRLMGPVQDGHTHLFFKFQSSKYVPAVEKAWPETKWIYLFRDPLEVIASNLKGAWRKIGANAARNTTQLANNQPVYNLGGPCVRGVRGSPKVPGGKPTPPPPQVLVNACVKQLESLNQVALEQIQDGSPNGLVVEYRQLPEVISEFVYPVHFGMATTDAEREESKQWMEPVTHVYSKGMATPQEEAVSKDFEQGMDLQVKEEGSDIAMRDAAASMCENYRKLVGLQRWRKEDEGGTMGTC 1487
            M R A L+ GCS+ LV++W +V I  A+   + +     +P     +EGG G H  +  +          + L +REL  +G  KK++  RG+SVDR NIV+ + M DL AP GRLWIPAA++GPI  +  D  L NVLVAYCQLDM AYH+SPW+FAMG FHQR SGC+DD SL RT+R SSLKR+++ENP+ FMDP+GFIYHETRCGSTL+ANMIAA+PSNIVH                 +C D LR++LVRT+FRLMGPVQDGHT LFFKFQSSK++PA+E+AWPETKWIYLFRDPLEV++SNLKGAWRK  A+A RN T  A    VYNLGGPCVRG +G     GG    P P+ LV  C K LE+LN++AL QI +GSPNGL VEYRQLPEV++E+VYP H GMA T+ ER E K+WMEPVTHVYSKGMATP E AVSK+++QGMDL++KE+GSD  MR AAA+MC NYR LV LQRWRKE++G TMGTC
Sbjct:    1 MPRLAVLISGCSVFLVLSWAMVAIRQASRPQFHSSSPTVLPAAKAQKEGGVGVHKEDAAKLKTRFKTPDGKDLGDRELDRNGKPKKRMGSRGISVDRKNIVETVEMDDLRAPPGRLWIPAALSGPINHDSPDNALFNVLVAYCQLDMVAYHESPWLFAMGAFHQRTSGCMDDPSLTRTYRLSSLKRVLEENPDEFMDPTGFIYHETRCGSTLSANMIAAVPSNIVH-----------------RCPDGLREELVRTVFRLMGPVQDGHTDLFFKFQSSKFLPAIEQAWPETKWIYLFRDPLEVMSSNLKGAWRKQVASAERNMTSPA----VYNLGGPCVRGAKG-----GGSRKAPSPESLVTTCAKHLETLNEIALTQIVEGSPNGLAVEYRQLPEVMTEYVYPKHLGMAETEEERSEFKRWMEPVTHVYSKGMATPAEGAVSKEYQQGMDLELKEQGSDPRMRAAAATMCANYRSLVELQRWRKEEQGSTMGTC 471          
BLAST of mRNA_A-nodosum_M_contig1197.16.4 vs. uniprot
Match: D7G7C8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7C8_ECTSI)

HSP 1 Score: 192 bits (488), Expect = 9.010e-49
Identity = 153/516 (29.65%), Postives = 224/516 (43.41%), Query Frame = 3
Query:  321 DLEAPL-GRLWIPAAITGPIEPNKVDPLA----NVLVAYCQLDMAAYHKSPWMFAMGTFHQRQSGCLDDKSLVRTFRFSSLKRLVDENPNAFMDPSGFIYHETRCGSTLTANMIAAIPSNIVHSETPPPVAVLNLCSGEGKCSDDLRDQLVRTMFRLMGPVQDGHTHLFFKFQSSKYVPAVEKAWPETKWIYLFRDPLEVIASNLK--------------------------------------GAWRKIGANAARNTTQLANNQPVY----------NLG--------------------------------------GPCVRGVRG---------------------------SPKVPGGKPTPPPPQVLVNA--------------CVKQLESLNQVALEQIQDGSPNGLVVEYRQLPEVISEFVYPVHFGMATTDAEREESKQWMEPVTHVYSKGMATPQEEAVSKDFEQGMDLQVKEEGSDIAMRDAA--ASMCENYRKLVGLQRWRKEDE 1466
            DLE P  G LW P  +  P++  +   LA       + +C + MA Y ++PW + M    Q++SGC   ++L R+F  S L+  + E+P  F+ P+GF+YHETR GSTL ANM+A +PSN+V SE+      +  CS    C++  +  L+R +  L+G  ++GH HLFFKFQ S  +P + KA+PE  W+YLFRDP+EV+ SNLK                                      G+ R++ A  AR         P            N G                                      G   R  +G                            P  P GK   PP    + +              C  +L +L Q A++Q+++G  NG VVEY  LP+V++E++YPV FGM   D + ++   ++     +YSK M+ P+ E     F+QG D   K   ++ A +DAA    +   YRKL GLQ W K  E
Sbjct:   18 DLEVPREGLLWQPT-LMSPLKCGEAADLAADECEATITFCLMRMAEYQETPWKYPMAVMLQKKSGCSKAENL-RSFHLSDLRTYMREHPEEFLQPNGFVYHETRTGSTLVANMLAHVPSNLVVSESNMAEDPVRRCS---HCTEMQKVTLLREIMTLLGNGRNGHKHLFFKFQDSTTLPLMMKAYPEVGWVYLFRDPVEVMVSNLKCFANRPEKQQAMGSCVAELRRELEAALAGPAALQAASRGSVRRL-ATQARGDADERRQHPYLLVLLVFRRSLNFGLRRWCFCTCSRRNSHTHGSIAASPQRLGSLPRLQHGAYGKRERFYKGFDFDAADHDMXXXXXXXXXXXXXTANHDPDKPEGKSGRPPMSPCLMSKPPSDMKGKPKEEICADRLRTLCQAAVDQLEEGG-NGAVVEYTNLPDVVTEYIYPVLFGMG--DDKLKDHLPYLSAAAGMYSKSMSNPESE-----FKQGTDAGYKHVMAEKAYQDAAEVTGLSAVYRKLQGLQTWHKGGE 519          
BLAST of mRNA_A-nodosum_M_contig1197.16.4 vs. uniprot
Match: A0A6H5KRY1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRY1_9PHAE)

HSP 1 Score: 180 bits (456), Expect = 2.150e-44
Identity = 129/393 (32.82%), Postives = 201/393 (51.15%), Query Frame = 3
Query:  300 VDPITMQDLEAPLGRLWIPAAITGPIEPNKVDPL-ANVLVAYCQLDMAAYHKSPWMFAMGTFHQRQSGCLDDK-SLVRTFRFSSLKRLVDENPNAFMDPSGFIYHETRCGSTLTANMIAAIPSNIVHSETPPPVAVLNLCSGEGKCSDDLRDQLVRTMFRLMGPVQDG--HTHLFFKFQSSKYVPAVEKAWPETKWIYLFRDPLEVIASNLKGAWRKIGANAARNTTQLANNQPVYNLGGPCVRGVRGSPKVPGGKPTPPPPQVLVNACVKQLESLNQVALEQIQDGSPNGLVVEYRQLPEVISEFVYPVHFGMATTDAEREESKQWMEPVTHVYSKGMATPQEEAVSKDFEQGMDLQVKEEGSDIAMRDAAASMC-ENYRKLVGLQRWRKED 1463
            +D + + D++   G LWIP ++      NK D L  + LV  CQ++  +Y  +PW+  MG      SGC D K   V+    S+LKRL++E+      P+GFI+HETRCGSTL ANM+A++ +N++ SE+  P  V++ C    KC    ++Q+V  +  +M  +     H H +FKFQSS+ + AV  A+P+T WI++FR+P+EV+ S L GA R IG                        RG++ S  +   K   PP +    +  + L  L + A+   ++    G++VEY  LP  I   V P H+G+  ++AERE     M   T +YSK  +  +       F +  D   K E + +A+++AA  +   +Y KL  L  W  E 
Sbjct:  184 LDTLDLDDVKD--GHLWIPVSV------NKFDNLETDPLVKMCQVNYDSYSAAPWLLPMGGLLSIASGCADLKRDTVQIVHMSTLKRLLEESTVPIPPPTGFIFHETRCGSTLVANMLASVETNVMWSESTGPWKVMHTCP---KCH---KEQIVPWLRVIMDAMTRSARHKHFYFKFQSSEDIDAVTSAYPDTPWIFIFREPIEVMMSRL-GAQR-IGMEGMEKEVAAR-----------VERGMKPSKILSKPKLGKPPKET---SAAQLLAGLCKKAIHAFEENPGKGMMVEYPHLPHGIVSTVLPDHYGVTVSEAERER----MMTSTQMYSKVASFAKGPTTDSKFTE--DTDTKHEAASVAVQEAAQRLLYPDYYKLRSLSTWPAES 540          
BLAST of mRNA_A-nodosum_M_contig1197.16.4 vs. uniprot
Match: A0A6H5K3E4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3E4_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 7.940e-41
Identity = 89/210 (42.38%), Postives = 128/210 (60.95%), Query Frame = 3
Query:  321 DLEAPL-GRLWIPAAITGPIEPNKVDPLAN---VLVAYCQLDMAAYHKSPWMFAMGTFHQRQSGCLDDKSLVRTFRFSSLKRLVDENPNAFMDPSGFIYHETRCGSTLTANMIAAIPSNIVHSETPPPVAVLNLCSGEGKCSDDLRDQLVRTMFRLMGPVQDGHTHLFFKFQSSKYVPAVEKAWPETKWIYLFRDPLEVIASNLKGAWRK 938
            DLE P  G LW P  ++        D  A+     + +C + MA Y ++PW + M    Q++S C   ++L R+FR S L+  + E+P  F+ P+GF+YHETR GSTL ANM+A +PSN+V SE       +  CS    C++  +  L+R +  L+G  ++GH HLFFKFQ S  +P + KA+PE  W+YLFRDP+EV+ SNLKGA+ K
Sbjct:  142 DLEVPREGLLWQPTTMSPLKCGEAADASADECEATITFCLMRMAEYQETPWKYPMAVMLQKKSECSKAENL-RSFRLSDLRTYMREHPEEFLQPNGFVYHETRTGSTLVANMLAHVPSNLVVSENNMAEDPVRRCSD---CTEMQKVALLREIMTLLGNGRNGHEHLFFKFQDSTTLPLMMKAYPEVGWVYLFRDPVEVMVSNLKGAYGK 347          
BLAST of mRNA_A-nodosum_M_contig1197.16.4 vs. uniprot
Match: A0A836CJX0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJX0_9STRA)

HSP 1 Score: 164 bits (416), Expect = 4.620e-40
Identity = 113/379 (29.82%), Postives = 179/379 (47.23%), Query Frame = 3
Query:  405 NVLVAYCQLDMAAYHKSPWMFAMGTFHQRQSGCLDDKSLVRTFRFSSLKRLVDENPNAFMDPSGFIYHETRCGSTLTANMIAAIPSNIVHSETPPPVAVLNLCSGEGKCSDDLRDQLVRTMFRLMGPVQDGHTHLFFKFQSSKYVPAVEKAWPETKWIYLFRDPLEVIASNLKGAWRK----IGANAARNTTQLANNQPVYNLGGPCVRGVRGSPKVPGGKPTPPPPQVLVNACVKQLESLNQVALEQIQDGSPNGLVVEYRQLPEVISEFVYPVHFGMATTDAEREESKQWMEPVTHVYSK-----------GMATPQEEAVSKDFEQGMDLQVKEEGSDIA----------MRDAA--ASMCENYRKLVGLQRWRKE 1460
               V++C +++A Y   PW   M       S C   ++  R +  + L      NP  ++ PSGFI+HETRCGSTL ANMIA IP+ ++ SE+  P   L L     K S +LR   VR +FR +   Q  H   FFK      +   ++ +P+T W++LFR+PL+V+ SN++GAW K        A+    + A+ + +     PC+R       +P G      P++    C   L+ + + A+   +      LV++Y+ LPE ++E+++PVHF       ER+    +ME     YSK                  +    DF  G D  +KE+    A          MRDA   +++  +Y +L+ +QRW K+
Sbjct:   70 GTFVSFCNMNIADYQSEPWKTPMDQMLAVASNCRS-RTHTRKYSLADLMAHQQRNPERYLSPSGFIHHETRCGSTLVANMIAHIPTALMVSESLVPYKALQL-----KASGELRVSEVRALFRALCFTQHHHDRCFFKLPGGTMLSQFQEVFPDTPWVFLFREPLDVVVSNMRGAWGKKELLYSEAASGQLIEKASKKAIA----PCLR-----MPLPDGVTRDDAPEM---RCAGGLDKICRDAMAAARARPDLALVLDYKNLPEAVTEYLWPVHFRQGPARTERD--LPYMEEAGRAYSKHNXXXXXXXXXXXXXKTMKRDKADFALGADADLKEKQLTDAIRRXXXXXXXMRDAVETSTITGSYEELLAMQRWTKD 428          
BLAST of mRNA_A-nodosum_M_contig1197.16.4 vs. uniprot
Match: D7FT31_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT31_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 5.070e-34
Identity = 110/335 (32.84%), Postives = 166/335 (49.55%), Query Frame = 3
Query:  492 QSGCLDD--KSLVRTFRFSSLKRLVDENPNAFMDPSGFIYHETRCGSTLTANMIAAIPSNIVHSETPPPVAVLNLCSGEGKCSDDLRDQLVRTMFRLMGPVQDG--HTHLFFKFQSSKYVPAVEKAWPETKWIYLFRDPLEVIASNLKGAWRKIGANAARNTTQLANNQPVYNLGGPCVRGVRGSPKVPGGKPTPPPP------QVLVNACVKQLESLNQVALEQIQDGSPNGLVVEYRQLPEVISEFVYPVHFGMATTDAEREESKQWMEPVTHVYSKGMATPQEEAVSKDFEQGMDLQVKEEGSDIAMRDAAASMC-ENYRKLVGLQRWRKED 1463
            + G L D  K+ + T     +KRL++E+      P+GFI+HETRCGSTL ANM+A++ +N++ SE+  P  V++ C    KC    ++Q+V  +  +M  +     H H +FKFQSS+ + AV  A+P+T WI++FR+P+EV+ S L GA R IG                        RG++ S K+P       PP      QVL   C K        A+   +     G++VEY  LP  I   V P H+G+  ++AERE     M   T +YSK  +  +       F +  D   K E + +A+++AA  +   +Y KL  L  W  E 
Sbjct:  107 EHGMLHDFTKTPLDTLDLDDVKRLLEESTVPIPPPTGFIFHETRCGSTLVANMLASVETNVMWSESTGPWKVMHTCP---KCH---KEQIVPWLRVIMDAMARSARHDHFYFKFQSSEDIDAVTSAYPDTPWIFIFREPIEVMMSRL-GAQR-IGMEGMEKEVAAR-----------VERGMKPS-KIPSKPKLGKPPKETSAAQVLAGLCKK--------AIHAFEANPGKGMMVEYPHLPHGILSTVLPDHYGVTVSEAERER----MMSTTQMYSKVASFAKGSTTDSKFTE--DTDTKHEAASVAVQEAAQRLLYADYYKLRSLSTWPVES 407          
BLAST of mRNA_A-nodosum_M_contig1197.16.4 vs. uniprot
Match: A0A7S3ZKE9_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZKE9_9STRA)

HSP 1 Score: 137 bits (344), Expect = 1.480e-30
Identity = 119/371 (32.08%), Postives = 176/371 (47.44%), Query Frame = 3
Query:  342 RLWIPAAITGPIEPNKVDPLANVLVAYCQLDMAAYHKSPWMFAMGTFHQRQSGCLDDKSLVRTFRFSSLKRLVDENPNAFMDPSGFIYHETRCGSTLTANMIAAIPSNIVHSETPPPVAVLNLCSGEGKCSDDLRDQLVRTMFRLMGPVQDG-HTHLFFKFQSSKYVPAVEK---AWPETKWIYLFRDPLEVIASNLKGAWRKIGANAARNTTQLANNQPVYNLGGPCVRGVRGSPKVP--------GGKPTPPPPQVLVNACVKQLESLNQVALEQIQDGSPN-GLVVEYRQLPEVISEFVYPVHFGM--ATTDAEREESKQWMEPVTHVYSKGMATPQEEAVSKDFEQGMDLQVKEEGSDIAMRDAAAS 1409
            R W P +I G +E    DP     V+ C+L    Y + P    M       S C   ++      +  +++  +  P   + PSGF++HE+R GSTL ANM+AA+P+NIV+SE+ PP AVLN C     CS   +  +++ +  LMG      HTHLFFKFQS+  VP +     A+PET W++++RDP++ + S+ K                      V N  GPC+R  R  P             K +   P+   N C   L  L   AL+   DGS + GL+V+Y  +P  +  +V+P HFG+  A  DA R  +       + VYSK     +  A   D E+      KE  +  A++ AAA+
Sbjct:  107 RFWAPVSIAG-VEHG--DPR----VSLCKLAFDTYWRDPSKTPMFRDLASASRCGRGRAGTLNTLYEDMRK-KNIKP---VKPSGFVFHESRVGSTLVANMLAAVPTNIVYSESAPPPAVLNHCRS---CSKQRKTDILQKLIALMGASPTNYHTHLFFKFQSAT-VPNIRSLLDAFPETPWLFVYRDPVQTMMSHFKNG--------------------VGN--GPCLRQRRSPPPATIKILKAESAAKASRTSPE---NYCAAHLAMLTSSALD--ADGSSDRGLLVDYASMPGALEAYVFPKHFGLSLAPEDALRTHA------ASSVYSKARGGRKAGAWESDNEK------KERAATPAIKSAAAT 423          
BLAST of mRNA_A-nodosum_M_contig1197.16.4 vs. uniprot
Match: A0A4D9CT70_9STRA (JmjC domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CT70_9STRA)

HSP 1 Score: 139 bits (351), Expect = 4.350e-30
Identity = 100/301 (33.22%), Postives = 147/301 (48.84%), Query Frame = 3
Query:  414 VAYCQLDMAAYHKSPWMFAMGTFHQRQSGCLDDKSLVRTFRFSSLKRLVDENPNAFMDPSGFIYHETRCGSTLTANMIAAIPSNIVHSETPPPVAVLNLCSGEGKCSDDLRDQLVRTMFRLMGPVQDGHTHLFFKFQSSKYVPA--VEKAWPETKWIYLFRDPLEVIASNLKGAWRKIGANAARNTTQLANNQPVYNLGGPCVRGVRGSPK-VPGGKPTPPPPQVLVNA---CVKQLESLNQVALEQIQDGSPNGLVVEYRQLPEVISEFVYPVHFGMATTDAEREESKQWMEPVTHVYSK 1298
            +A CQ D++ YH++P  F M    +   G    K+ ++  + +S+   VDE     + P+GFI+HE+R GSTL ANM+A++P+N+V+SE   P  V++LC   G CS++   +L+R     MG     H H F KF SS  V    + KA+PET W Y++RDP+E+I SN +                          GGPC+R  + +PK V     T       V+    C   L  L Q ALEQ++     G  V Y  L E +   + P HFG++    E       M   + +YSK
Sbjct:  160 MALCQFDISPYHRNPEQFPMS---RDLVGAFCSKNRLK-HKLASV-HAVDERAGKQLQPTGFIFHESRVGSTLVANMLASVPTNLVYSEPSVPAHVIHLCKSAG-CSEETTVRLLRMAILAMGRSHH-HDHFFIKFSSSTVVDMDLILKAFPETPWAYIYRDPVEIIVSNFQ-----------------------RGRGGPCIRAKKNAPKAVQDILKTDRRGASRVSDEEYCAAHLTMLCQAALEQMELPGSKGHAVAYETLVEDVLRVLVPGHFGVSMNSEETAR----MTAQSELYSK 426          
BLAST of mRNA_A-nodosum_M_contig1197.16.4 vs. uniprot
Match: A0A6H5JFB5_9PHAE (JmjC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JFB5_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 4.690e-30
Identity = 91/272 (33.46%), Postives = 139/272 (51.10%), Query Frame = 3
Query:  414 VAYCQLDMAAYHKSPWMFAM-GTFHQRQSGCLDDKSLVRTFRFSSLKRLVDENPNAFMDPSGFIYHETRCGSTLTANMIAAIPSNIVHSETPPPVAVLNLCSGEGKCSDDLRDQLVRTMFRLMGPVQDGHTHLFFKFQSS--KYVPAVEKAWPETKWIYLFRDPLEVIASNLKGAWRKIGANAARNTTQLANNQPVYNLGGPCVRGVRGSP----KVPGGKPTPPPPQVLVNACVKQLESLNQVALEQIQD----GSPNGLVVEYRQLPEVI 1196
            V  C LD   Y   P+ + M     +   GC   +S   +   S L+  +D NP  +++P+GF++H +RCGSTLTAN++ + P NIV+SE+ PPVAV++LC   G C+++ R   +RT+   MG     H H+FFKFQSS  +++    KA+P T W++++RDP+ V+ S L G    +    +R+T              PC+R +   P    K+ G   +          C   L +L + ALE + D    G   G  V+Y  LP  I
Sbjct:   96 VFMCSLDRDTYFHQPYKYPMFKDLVKLSGGCQGAQSTATSI--SKLQDEIDANPEGYLEPTGFVFHMSRCGSTLTANLMGSSPHNIVYSESKPPVAVMSLCDQVG-CTEEQRVAALRTVILAMGKTSF-HKHMFFKFQSSQTRFIHYYRKAFPNTPWVFVYRDPVPVMMS-LLGFKAGMTQRPSRST--------------PCLRSMGSPPDETAKLLGMSTSEAKKAPFERYCAAHLATLVESALESVDDAAASGGAEGHAVDYETLPNAI 348          
BLAST of mRNA_A-nodosum_M_contig1197.16.4 vs. uniprot
Match: A0A7S2S3F9_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S3F9_9STRA)

HSP 1 Score: 132 bits (332), Expect = 3.570e-29
Identity = 119/379 (31.40%), Postives = 183/379 (48.28%), Query Frame = 3
Query:  372 PIEPNKVDP---LANVLVAYCQLDMAAYHKSPWMFAMGTFH-QRQSGCLDDKSLVRTFRFSSLKRLVDE----------NPNAFMDPSGFIYHETRCGSTLTANMIAAI-PS-NIVHSETPPPVAVLNLCS-GEGKCSD-DLRDQLVRTMFRLMGPVQDG-HTHLFFKFQS--SKYVPAVEKAWPETKWIYLFRDPLEVIASNLKGAWRKIGANAARNTTQLANNQPVYNLGGPCVRGVRGSPKVPGGKPTPPPPQVLVNACVKQLESLNQVALEQIQDGSPNGLVVEYRQLPEVISEFVYPVHFGMATTDAEREESKQWMEPVTHVYSKGMATPQEEAVSKDFEQGMDLQVKEEGSDIAMRDAA-ASMCENYRKLVGL 1442
            PI+ NK +     + V   +C +D + +   P    M  F  Q+  GC    ++       + K +VD+          N    M P GF++HE+RCGSTL AN +AA+ PS N V+SE+PPP+ VL  C   +G C   D   QL R +  +MG   D    +LFFK QS  +KY+     A+PE  WI+++RDP++V+ S+LK      G + A    QL+   P  +L    +   +G  K    K TP       + C   L +L + A+  +Q     G  V Y  LP ++ + + P HFG+  + A+R    +    ++  YSKG      EA+    E   D   KE+ + + ++ AA   + E++RKL GL
Sbjct:   87 PIKYNKKNTNVSYSGVFGRFCTVDWSLHKNDPAAHPMFRFLVQKSPGCAKPVNV-------NFKEIVDKVKEFDKTNNGNDVHVMAPKGFVFHESRCGSTLVANSLAAMDPSKNRVYSESPPPLEVLKSCGLHKGACGGGDQAIQLFRDVVYMMGRTNDAKEQNLFFKIQSVGTKYIDIARMAFPEVPWIFVYRDPVQVMMSHLK-----YGPHRANCVRQLSI--PPTHL--KTILDGKGLTKK---KMTPE------HQCAIHLNTLCESAVSSLQSSPSYGKAVNYNLLPGILVDSIVPEHFGVPLSSADRARITE----ISSTYSKGKG----EAI----EWKEDSSEKEKNASVEVKSAADLFLYESFRKLEGL 428          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1197.16.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7Z3_ECTSI2.940e-19860.56Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G7C8_ECTSI9.010e-4929.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRY1_9PHAE2.150e-4432.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3E4_9PHAE7.940e-4142.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CJX0_9STRA4.620e-4029.82Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FT31_ECTSI5.070e-3432.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3ZKE9_9STRA1.480e-3032.08Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A4D9CT70_9STRA4.350e-3033.22JmjC domain-containing protein n=3 Tax=Monodopsida... [more]
A0A6H5JFB5_9PHAE4.690e-3033.46JmjC domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A7S2S3F9_9STRA3.570e-2931.40Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1197contigA-nodosum_M_contig1197:212431..223251 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FT31
Model size3149
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons6
Evalue3.78e-36
EggNOG OGs2D2H3@1|root,2SMVN@2759|Eukaryota
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-06_009540.1
DescriptionSulfotransferase family
Cds size1449
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1197.16.4prot_A-nodosum_M_contig1197.16.4Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1197 212475..221595 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866615.5889003-UTR-A-nodosum_M_contig1197:212430..2124741680866615.5889003-UTR-A-nodosum_M_contig1197:212430..212474Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1197 212431..212474 +
1680866615.6571946-UTR-A-nodosum_M_contig1197:221595..2232511680866615.6571946-UTR-A-nodosum_M_contig1197:221595..223251Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1197 221596..223251 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866615.6025233-CDS-A-nodosum_M_contig1197:212474..2129811680866615.6025233-CDS-A-nodosum_M_contig1197:212474..212981Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1197 212475..212981 +
1680866615.6104548-CDS-A-nodosum_M_contig1197:215009..2151341680866615.6104548-CDS-A-nodosum_M_contig1197:215009..215134Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1197 215010..215134 +
1680866615.6189942-CDS-A-nodosum_M_contig1197:216198..2164451680866615.6189942-CDS-A-nodosum_M_contig1197:216198..216445Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1197 216199..216445 +
1680866615.6300783-CDS-A-nodosum_M_contig1197:219715..2199821680866615.6300783-CDS-A-nodosum_M_contig1197:219715..219982Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1197 219716..219982 +
1680866615.6390882-CDS-A-nodosum_M_contig1197:220698..2208421680866615.6390882-CDS-A-nodosum_M_contig1197:220698..220842Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1197 220699..220842 +
1680866615.6484158-CDS-A-nodosum_M_contig1197:221436..2215951680866615.6484158-CDS-A-nodosum_M_contig1197:221436..221595Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1197 221437..221595 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1197.16.4

>prot_A-nodosum_M_contig1197.16.4 ID=prot_A-nodosum_M_contig1197.16.4|Name=mRNA_A-nodosum_M_contig1197.16.4|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=483bp
MIRTAPLVWGCSIVLVVAWLLVGIHDANVAGYPNEIEPKVPREGGWGHFG
NLQRNEILKERELKNHGVLKKKLTMRGVSVDRSNIVDPITMQDLEAPLGR
LWIPAAITGPIEPNKVDPLANVLVAYCQLDMAAYHKSPWMFAMGTFHQRQ
SGCLDDKSLVRTFRFSSLKRLVDENPNAFMDPSGFIYHETRCGSTLTANM
IAAIPSNIVHSETPPPVAVLNLCSGEGKCSDDLRDQLVRTMFRLMGPVQD
GHTHLFFKFQSSKYVPAVEKAWPETKWIYLFRDPLEVIASNLKGAWRKIG
ANAARNTTQLANNQPVYNLGGPCVRGVRGSPKVPGGKPTPPPPQVLVNAC
VKQLESLNQVALEQIQDGSPNGLVVEYRQLPEVISEFVYPVHFGMATTDA
EREESKQWMEPVTHVYSKGMATPQEEAVSKDFEQGMDLQVKEEGSDIAMR
DAAASMCENYRKLVGLQRWRKEDEGGTMGTCR*
back to top

mRNA from alignment at A-nodosum_M_contig1197:212431..223251+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1197.16.4 ID=mRNA_A-nodosum_M_contig1197.16.4|Name=mRNA_A-nodosum_M_contig1197.16.4|organism=Ascophyllum nodosum dioecious|type=mRNA|length=10821bp|location=Sequence derived from alignment at A-nodosum_M_contig1197:212431..223251+ (Ascophyllum nodosum dioecious)
CACAGATAATCTGATTTCTCCGATACCTCGGTTGGTGCTGGAGGATGATC CGTACAGCACCCCTAGTTTGGGGATGCTCTATTGTTCTCGTGGTAGCATG GTTACTTGTAGGGATTCACGATGCAAATGTCGCAGGCTACCCCAACGAAA TTGAACCAAAAGTGCCTCGGGAAGGAGGATGGGGTCATTTCGGTAATTTA CAGCGCAACGAAATTCTCAAGGAGAGAGAGCTCAAGAACCACGGAGTGTT AAAGAAAAAGCTGACCATGAGGGGAGTATCGGTGGACCGCTCAAACATCG TGGATCCGATCACAATGCAGGACTTGGAAGCACCGCTGGGCCGACTATGG ATACCAGCAGCGATCACCGGACCGATCGAACCAAACAAGGTCGATCCTCT CGCCAATGTGTTGGTGGCGTATTGCCAACTTGACATGGCCGCCTACCACA AAAGTCCGTGGATGTTCGCCATGGGCACCTTCCACCAGAGACAATCTGGT TGCCTCGACGACAAGTCGTTGGTCAGGACCTTCCGTTTTTCCTCTCTCAA GGTGAGAATTCCATCCTCTATCCCAGGGAGGGTTATTCTTAACTTCTTGT AGAGAAGAGTTGCAAATGTTTCTCTGGCGCTTTGAAACCTGAGCCTCAGT TGTATGCCTCTACATGGCGATATTAGAGCTATTGCAGTACTAGCCGGTCG CCCCGGTAGCTCAGAGGTACCTCGTAACCCTCTGACACGTTGGGACGTGA GTTCGTTCCCGGCAAACGGGATTTTTCTCACTAAAAAACTAAAAACTAAA AATAAAAATGCCCAACGGATGGAGAACGATTAAATCGATAGTACACAAAA TTCGACTTCACGGTCGACGAGGGAAAGGAATGTCTGAATTAAGGCACGCA CCGCAGAAAGAAGGTGGATGAGAAATCCTGTGTGACCTTCCTCCTGTGTG ACCCCGGCTGGTACGTCCAACGAACTTGATGTCCAGAATGAATTGGAAGA AAACACACACACACACACTACTGAGTGCACAGACATAACCAGCTAGTCTA TAACCAGAGATATTTTAATTTTCGTATAATGTTGACCCTATTCGGCCATC ATTGGGCAACCTGACTAAATCCCACCTGATATAGTTTTTGTTCTACAACA GTATTGGCAGCCTATGATCCCACCTAAGCGTTTTTGTCATTTTCCCCCTG TCTGGGATGCTGAGAAGGTTTAGATGCGTTCAGATTTTTGTTTGAACAGC CAATAATGTCTTCATCTGCACGTTTCGACACAATTCCGGGAGGTGTCGGG AGGTGTGGATGCTCGGAGGGTTTAGAGGCTTTCAGATTTTTTGTTCGGGC CGGGTCCATCTCTGATACAGTATGAGAAAGTTATTCTTGTACAGTGTACG TACATTCATCACTTGTACAGACACAAATACCGGATTTTCTTCACTAACTA ATGCTTGTACCCCAGGGTAAGTATTATCATACCAGTATTATTTAATTTAA TACTGTATAATAGTGTAGCTGCTCTCTCGCGACAGAAAACTACAGGTTAG AAGCAAGCGCAATTGATGGCACCCTTTAACACCTCTAGTCTATGCATACA GCAGTATAGTATAGTATGAAATAGACTTGCCACTACCTCTCGTTGAGATA AATGTAAGACATTTGGTTTGGTTTGGCAGATCCGTGAACTTAGCGCGTTC GTTGTGTACTGTAGTGTACTGTAGAAACATGGTACAGACTAGTTGCACAG CAGTAGTAGGGAATGCGCGGAAACCCTTGTTGACTCTGCAGCCCTGACTG TCCTCTTATCTTCCATGCCAAAGTCGTGACTCATGACTGACGCTGGAAGC ACAAACCTACCGCAAGAACTTGTATTCATGCTTTAGATCTTACTCATTAC AAAGCTACTGTTGTGTACAACTAGAGAGCCTCTTTAGTTGTTTAGTATTG TATTTACAGTACACCCCTTCCACAAGATCGCAACGTGGTGAGGCTTACTC CATGAGGAGTGAGTTGTGTTGATTTTTCCGCTTTGCCGATAGGGTGTTCT TTAAACACCCTTGCGCTTATGATTCCTTGTAAAAAGGAGGAGCAAATCGA TTTTCCGTGTTCGGCTAACCACAAGCAGGAGTATGGATCGACCGGGTAAG GTTGCCAATCCTGCTCGTGGTCAGCCAAACAGGAAAAATGGAAGTTTCCC TGTCCCCGTTCACGCCTGAGAACTTGGTTTCGCGAGACGAGTTCGGCTGT CCCGTCGACTATACACAAACAGTAATCGGCAAATGGAGTCTTAGTTGTAG CCCAGTGTCACAAAATGTCTGTACCACGTCGAAAATATACCGAAAAACTA TATTCGTCTCTTTCACGAGATTTTTTCTACCTTGATTGTTTTAAGCACCG TTGGGAGGTTGGAAGACCGTAGATTTTCAGAGATGTTCTTCAGGAGGGAA ATTGCCCAAATTTTACCCAGGCGATGCCTCTTTAGCACTTGGTAACTCGA CATAACCGTTTCTCAGTTCTCGAGCATTTGCTGTCTTCGCAAATCTGCTG CCTGCTACCTGTTGGGCTTCGATATCCAGCGACTGGTGGACGAGAACCCA AACGCTTTCATGGACCCTTCGGGTTTTATTTACCACGAAACGCGATGCGG CTCTACCCTGACAGCAAACATGATTGCGGCGATTCCTTCCAACATTGTGC ACAGGTGAGGTACTTTCGTACTATTAAGAATATAGTGTACCTGGTAGAGT CTTTGGGCGGTGCCAGGACGACTGATTCTATACGGTGCGAGGGGAAACTT TACAGAATTATGTGAAGGACAGAGTCGAGGACATCTGAAATGCGTTGCGA GAGCAGGTGTCGAATTGCCGTGGAATCATTGATTTTGTCCGACTTTCTGC GTAGTACTGTCATAAAAAAACAGGTACAGTACAGTCGATGTCCCGGTTGA CCGGCCTCCAGTTTACCGGTTTGCCCTGTTTACCGGTGTTTTTTTTCTTG CCACCCCGTCACCCCGGTTTACCGGTGGTATGCCGGTATACCGGGGTGGT TCATTTTTTCATGCTCGGTGATTCCCTCCTGCTGCTGCACACTCCCACAC ACGCTGCTGCACACAACACAACACGCTGGGTGTTGCGGGCAGCAGCCAAC ACTTGCCTACACACCATGCCATGTGCGGCAGGAGAATTATGCCAACTTAG TGACGGCACTGCCACCCCAGAATTCTCCTGCTGCGGCCCATGCGGAGGTC GCCTGCACCGCATTTGCGGTGATCCTGATGACGACGAGGAAGTCAACCGC ATCTGCGAACCATTCTCATATATTTACCGGCATGTACAGCAGTATTGCAC ACTCGTGCACTAATAATACTGTAGTTGCAGGCTACCACGACAGCAGGAGA AACACAGACACGCCATATCGAAGTCTGTGGGGATACATCTGCTCTTCTTG TGCACCTGCGGGCGTTTTCCCCGGTATACCGATTTGCCCTGTTTACCGGT TCTTTTTGGTCTTGCCACTACAGGCCGGTAAATCGGGACATCGAACTGTA TCCTACAAGGTCGTCCCCATCCCCAACACAAGCAGACTGCAGAGGCGGTT TGCCTTTCGGCTCCTGCATTTCTAAAACTTTGAACGCATTCAAACCTTCT ACATGTAGCATCTGATATTGAAAACATCCGGGGGGTGTGTTGTCAAAAGG TTTGAGCCGGTAACCGCTTCTTCTATTCCGCCGTGGCGTGAACGTTTTGT GCCGTTTGGGGAAAACAGTGAAACACCTCCCCCCGTTGCAGTCCTCAACC TCTGTTCGGGCGAGGGCAAATGCTCCGATGACTTGAGGGATCAGCTAGTT CGCACGATGTTCCGCCTCATGGGGCCTGTCCAAGACGGGCACACGCACCT CTTTTTCAAGTTCCAGAGCTCCAAGTACGTCCCTGCCGTGGAGAAAGCGT GGCCAGAGACCAAGTGGATTTACCTCTTTAGGGACCCGTTGGAGGTCATT GCTTCCAATCTGAAGGTGAGTTGTGTGGAAATATGCTATATTCCCAAGCA CTCTTCGTTTTCTTGTTTTTCGGGTAGCAGATTTGGGCTGGTCTCCAATA TTGCTTGACCTGCTTGTGGTTAGCCCAATCGGACAAGAAGTGGGTGAACA TCTGGAGCGTACCTGGTAGGTCATAACGTGGCAAATTTTTTTTTAATTCT GTAGTCTAGCGATTTCGTCTGTTACGAAAATAGAGTCGGTCTAAGTCCCG GTCTAAACGATTTTTAGTTTCCAAAGTTTGGAATGGAACGTTGGAAAAGT TTGTACAAGTTTGAGGGGGAAAAAAAGTCTACATGCACACTGGGCTGGTT TGGTCCAGCGTCTTCACACCTTCAAAATGCACACTATTATTTGTTTCTAG AATATTTCATTCCGCCACACGGTCCCCGATAAGGCTACTCTAGAACTCGG ATAGATACACGATCTTCGTTCGACGGGCTTCATTTGCCTGACATGGGCTC CACCAAGTTTCATCCGACGGTACAGCACGGTACAGCACGGCATGGACTAT GACTATAACTATGTATGTATGTATGTATGGTCATCACATATAGCAGAGTA TGGATCAACCGGGTAAGGTTGCCAATCCTGCTCGTGGTCAGCTGAACAGG GAAAATGAATATTCCCCTATCCCCGTGCGTGCCTGAGAATTTGGGCTCGC GAGACGGGTTCAGCCGTCCCGTCCCGCGTCAGCCTGCTCATCTCCATACT CAGGTATAGCTGGCGCGGTGTCAGTCCACTCATTCATGGCTACCATAAGA AGTAGATAAAATGAAACTTTCGGGTCTAGGCCGATCGACCTCCAAACACG CTGCGGGATAGCGTTTGCCGTCGAGCTCGCGGTGATGCCATGCCAAACCT TCGGACGTGGTATAGGAAAGGCAACAAGTCTTTTTGGGACAACGGTACCG TATGGTATAGTATAGCTTGTGCTTGTGGCCGCCTTGGTGCTGACTTTTGT GGAGTGCAAAGGCGAATAACGAGGTGTTCGAAGTGGACCCAGGATGCAAT TTTCCAAACTTCCCCAACTTTCCGACTATGGAAATCGACGAACAGCAAAA ACGTTTTTCCAAACTTTGGAGGGGTTTCCGCACGCTGCTTTTTGGAAGTT TGGAAACGGTTTGACAAGTTTGGATGTTATTGTTTGGTTTAGGTTAACCC ATAACCGAAAAATAATTTCTAGACTTGTCCAAAATTTTAAAAAGGAGCCT ACTGCGCAAACCTCTCAAAAAATTAAATTATATCTGAACTTGTCCAAAGT TTGGAAAATACGCCTCCTGGGGTGCTCTTGGAACACTTCGTGCAACAAAC GTTTTGACATTTTTTCCCCCTGACTGGGGGATGCTCAGAAGGTCTAGGTG TGTTCAGATTTTTCTTTAAAATACTCCACCCAACAAGGGTCAGCACCAAG GCAGCCGCACGCAATGCCGTTGTACGAGACTCCCTGCAAGCTTGCCTTCC TACCTTTCTATGCCACAGTCGAAGGTTGAGTACCACTGCGAGCTCCGCAT CAAAAAAGTTATCCTGCAGCGTGTTTGGAGGTCGAGCGGCATATTCTCAA CCTCTTGGGGTAGCCTTCCATGAGTGGATTGACGCTACGCCAGCCGGTCC ATGCCGTGGGCTGATACTTAAGAGCTCATGTCAGGCATTGACGACCCTTG TCGCCCGAGTTGTCTAGTGGTAACCTCGCATACCCACTAGTGCGGAAGTC GTGAGTTCGATTCTTGTTAAAGCAGGGGGGTTTTTATTAATTTTGGCGTC CGTACCGGCAAGCGTGAGAACGTGAGTAATACTAAGTAAAATTCAACCAT TGGTTGACGAGTTTTAAGAGTGCTGAACTTGCATCGTGATGAAAATTCGT AACGCGAGAACTGGGGAGAGATGAGAAGATCCTTAGTGACCACAGCCGGG AGGGCAACGTTGCAGTAGGTGGAATTGGTAATCTAGCACGTTTAGGCCCA TCGGCCGTAAGTGAGATACAAAAAAATAACAATGAAGCCCGTCGAACGTA AATCCTGTACGAGTATCTATATGAGGTCTAGAATGACCATTATTGGGAAC CGTGGCGGAATGAACTGTTGTTTGAAGCAAGCTATTCATACTAAAAATAG TATGTATTTGGAAGGTATGAAGACGTTGAAAACGACTCCAAACCAGCCCA AGGTACGTACCGGGCCTTAGGTAAACCTTACTATCAACTTGACATCTGAA ACGACAGCGTTTTCATTCTTTATATTGGACCATTTCGAATGTCCGAGCAC TGGCTTCATATTCCATCGTGGTCAGTACGGCAGACCCCGGGTTTTGGGTT TTGCGCCGCTTTCACTGATGTTGCAGCTAGTAGAGAAAAAAAACGTTTTC GGTACTTACAAGTTGGAGTTTTTGTTGTTATAGAGGTGGACCGGGGAAAC CGGGGTCCCTGACCAGCAACAGCAACAAACCTAGTTCAGACCGTCCTAGC GCCCTGGAGCATGAGCCCACACGAGCCCGGCGTATAGAGGAAGCATCTAC ACCCCAAAGGCGAACAGGGCGAGCAATTTTTGCTGTGCATAGTGTCCACA ATCCCGATATATGGTGTTGGTGCGGAGGACCTGCTCTTTACCAATCAGGA TCACAACCCATCCTTTGCCACGGCGGCAGTTATTGCGAAGGAGAGGAGTC TACAGACTTGGCAGCTTTACTCATGGAGCTAACATGAAGAAGCCTGGTGT CCCCGATGACTTAGATCATTTGATCTCGCGTCTCTTTCCGACCTTGTCCA TGCCCATGTTTGGCGGTGGACCCTATGTAATATACTGTATTACAGAACTA CCTGGTACAGCAGAGTGCACAACTGCTCCAAAACAAGAGTAGAAGAAAGC ACACTTGCTTTCAATTCGAGATAATGTCATGTCTGTTAAGAGCAACCGGC AGTGGCGCACATTATTAATAGTACGAAGTGCATTATTAATAGTACGGCGC TTGGTGGAGGCGCCGTTTCATTTACGTGGTATTTCATACATCCAATGGAA TGTCCCCGTCCCGTGGCTCTAGACACCAGAATTGGAGGTTGTTGAGGCAC AATAAAAAATCTAGTAGGTGGGAAATTGACTTTTGAGCTGCTGTTCCACG ATATATATCCCCTTACATTTTCGATCATAACCCTCATTTTCCCTACTAGA GCATTGATATTGATAGGTGCAACATTAACAGTGCTGTGCTTGTTCTTATT GGGACTTGTTTCTTTTAACGTCGTTTTAACGTTAGGGCGCTTGGCGCAAG ATTGGGGCGAACGCCGCGCGTAACACGACCCAGCTAGCGAACAATCAGCC AGTGTACAACCTCGGAGGGCCCTGCGTACGCGGGGTCAGGGGGTCCCCGA AAGTTCCGGGCGGTAAGCCCACGCCCCCTCCGCCTCAAGTGTTGGTGAAC GCCTGCGTGAAGCAGCTGGAGTCCTTGAATCAAGTAGCGCTTGAGCAGAT TCAGGATGGATCTCCCAACGGGCTGGTGGTGGAGTATCGACAGCTGCCGG AGGTGGGATTCTGTTTGTGTTCGAGATTGGAAATAACGTGCTCTGTGTTT TTATGGTGTTGATACTTTTTTAAAGAAAAATCCAAACGCATGTAAACCTT GATCATTCATCATTCTGTCAAAACGCATGCACCCAATCGGGGGGAGGGGA TATTATATATTATTGGATTGTCAAAACGTTTAGATCTATAATACTAATAG GTACAATAGGTGGTTGGAAGATATATACTGTATATATATATAGACTGTAA GGACAAAAACTCTTCATGCAAGTAGCAGGTTTGCGTCTGCCTTGAGATGA TTGGCATACATGTTTTGTTGTTTCTAGCTATGCAGAGCGAAACTTGGACG GGAGAGTAGCTGAGAGAGAAGGGTTTCTCGGACAGCTCGTACGTATTTAC TTGGTTCTTCGAAATCGAAACTGACAGGGAAGGACTCTGAAATATATACA GTATACTGTAGCTTTTAGGCTCCGCATTTGTGAAAATGAAAACTGATATC AGTACTATCAATAATTATTTCTCCTGCTATGAAACCTGGTCACTCCACAT GACGTCTGCCTGCCTTAGATGGAAAACGAGGAGACTCTTGGCTGACGAGC TCAAGTATGAGCACGGCACCTTATTACAAGAGCCAACAGTCAAAAAAATT GTTTTGAAAGAAAAATCTGAAGGCATCGAAACCTTCTGAATACGTGGCTC TGCTGCACCTGCGCGCAGGTGATTTCCGAGTTCGTGTACCCCGTGCACTT CGGCATGGCCACAACAGATGCAGAGCGAGAGGAGTCGAAGCAGTGGATGG AACCAGTGACCCACGTGTATTCGAAGGGTATGGCTACACCACAAGAGGAA GCCGTTTCGAAGGCAAGTTTTTCTTGAAACCCTGCAGACACAACAACCTT GCGAACAAAATCGAAATAGCCAGTTTAAACACGGGGTGTTTGACTTTTTT GAACTGCTTGACACTATTAGTAACATAATGAACAGTAAGAGCCCTCCAGC GCACTTATTACTGTATGAAGTACACCATTACCATGTGGGGACACCAAGAA AAACAAGAGGTTGTGTTTGGGGTACCCAGTACTCCGCAGAATGCACAAGT ATTTTGTCTAGTCTGTTCTGTTTAGTCAAGTGCCATTTCATTCGCATGTT GCCCTTCCCGCATCCATTACGCACCTAATTGTATGCAGTGTTATAGTGGT ATAGTGGTACCATAGTCTTTTATACAGTAGGTGGAATAAATAGGACGTAC AGTTAGTGAGTGCAAACGTATTCGTGCGTCCTATCTACAGTCAAGTGTGT AGCTGTACTGCTCTCTTCTTCTGGTGTCATACATGGGAAATTGGCGCCGC GAGTCTCATTCGGGGAGGGGATTTGGGTCAGGTGTAAGTTGTACCTGGTG TAATTGTTAACGCAAGCCCTCATGCGTTACGACGTCCCGATTCTTGGACT GGACAGGATTTCGAGCAGGGGATGGATCTCCAAGTGAAGGAAGAGGGAAG CGACATCGCCATGAGGGACGCGGCGGCTTCGATGTGCGAGAACTACCGGA AGCTGGTGGGGCTGCAACGATGGCGTAAGGAGGACGAGGGCGGGACCATG GGGACGTGCAGATGATAACGAAGAAGGTTGTTATTTGTTAGCGTGTTGCG AATCCCTGAACCATAACCATAACATCTCGTGATGTCAAATATAGTGTGTG TGTTGTGTTTTCTTCCCATTCATTCTGGACATCAAGTTCGTTGGACGTAC CAGCCGGGGTCACACAGGAGGAAGGTCACACAGGATTTCTCATCCACCTT CTTTCTGCGGTGCGTGCCTTAATTTTTCTCGCGAGAAGGATTCAGCCATT CCTTTCCCTCGTTGACCGTGAAGTCGAATTTTGTGTACTAACGATTTAAT CGTTCTCCACCCGTTGGGCATTTTTATTTCCATTTTTTAGTTTTTTTTTG TGAAAAAAATCCCGTTTGCCGGGATTGAACTCACGTCCCAACGTGTCAGA GGTTGCATGGTACATCTGAGCTACCGGGGCGACCGGCGACGGATTAAATG GGAAATACAGCAGAGGATGAGTAGTTAAGGTTTCTGCGTTGGCTAGATAA ATAATAATAGACTGAGCCTTAGAGTGGGGATTGAGCGGGCTGGCGCGGGA CGGTATGGCCGAACCCGTCTCGCGAGACCAAATTGTCAAGCGCGAACGGG GACAGTGAAAAAATAACATCCCCTGTTTAACTGACCACGAGCAGGAATGG CAACCATACCCGGTCGGTCCATACTCTGCTGAAAGTACTGGCCATATGTA CATACATCTTATGGTATAGTGCGGATGTTGGTCGTTGACGCCACATATAT CAAACTGCTGTGTGTTCCGATTTAATTTCCGATGAAATAATCGGCCGTTT TTCCGTTCGAACGTTTCTAAAGCGCTCTCGTTAATATGCAACATGAGTAC GAGATACCTACCAGTTACTCTTTTATCTCCGTCCTTGTGTGTTTGTTATT TTTTTTGTAGTGTTTGCAGGTTACCCAAATTAGCAAAACTGGCTACGTTG AGTAGACTATGTTGTCTTAAGTTCAAGTGAGTTCAAGTGCTGATACGATA CGGACTTACTTACTTACCTGGTTCGATTCGACTCGTGTCTTTATTTTTGT TTCGTGTCTTCATTTTTTCGACGATTGTTTCAACGATGGAATTCAATATT GCATAAAAGTATTTTGAAGGGGGAGCATGAGCTGAGCCCCTCTCGTATTA TTTATTATTGATATGAATACAGTATTAATGTGTATCGAGCGATGTACATA TCTTCCAAATTCCCCGCAACAGCTGACAAAGTCTATTAATAGAGCACTCA CTGATATTGATATTGATGATGACTTGATGTAATACAGATGTTGGAATACT GGCAGCACCCCAAAATATAGACGCTGTACCAGTAGTTCGTACTCTACCCC AAGGACTTATTTATTACTACATCGGTCGTGACGCGGAATTACGTTTCAGT TGTTTTCGATTGGTCATGCCTAACGAGAATTCTGTCGCGATTTCGAAATA TTTTTGGTTTGAGTAGCGGGGTGCCACCATTTACGTGACCCGTTGACGTT CGTACTTCTGAGAGACCACAAGCGGGATTGGCATCTGAGACTCTAGGTTA GAGCTGACTGTGTCGTCGTAGTCTTCAGTTGCAAGGATATTCTTTAGACA ATACGCTGAAAGTGCGAATCAATCTATCAAATAACCGAACGGCTCATGCC GTTTACTCGTATAGAATTGGG
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig1197:212431..223251+

>mRNA_A-nodosum_M_contig1197.16.4 ID=mRNA_A-nodosum_M_contig1197.16.4|Name=mRNA_A-nodosum_M_contig1197.16.4|organism=Ascophyllum nodosum dioecious|type=CDS|length=1449bp|location=Sequence derived from alignment at A-nodosum_M_contig1197:212431..223251+ (Ascophyllum nodosum dioecious)
ATGATCCGTACAGCACCCCTAGTTTGGGGATGCTCTATTGTTCTCGTGGT
AGCATGGTTACTTGTAGGGATTCACGATGCAAATGTCGCAGGCTACCCCA
ACGAAATTGAACCAAAAGTGCCTCGGGAAGGAGGATGGGGTCATTTCGGT
AATTTACAGCGCAACGAAATTCTCAAGGAGAGAGAGCTCAAGAACCACGG
AGTGTTAAAGAAAAAGCTGACCATGAGGGGAGTATCGGTGGACCGCTCAA
ACATCGTGGATCCGATCACAATGCAGGACTTGGAAGCACCGCTGGGCCGA
CTATGGATACCAGCAGCGATCACCGGACCGATCGAACCAAACAAGGTCGA
TCCTCTCGCCAATGTGTTGGTGGCGTATTGCCAACTTGACATGGCCGCCT
ACCACAAAAGTCCGTGGATGTTCGCCATGGGCACCTTCCACCAGAGACAA
TCTGGTTGCCTCGACGACAAGTCGTTGGTCAGGACCTTCCGTTTTTCCTC
TCTCAAGCGACTGGTGGACGAGAACCCAAACGCTTTCATGGACCCTTCGG
GTTTTATTTACCACGAAACGCGATGCGGCTCTACCCTGACAGCAAACATG
ATTGCGGCGATTCCTTCCAACATTGTGCACAGTGAAACACCTCCCCCCGT
TGCAGTCCTCAACCTCTGTTCGGGCGAGGGCAAATGCTCCGATGACTTGA
GGGATCAGCTAGTTCGCACGATGTTCCGCCTCATGGGGCCTGTCCAAGAC
GGGCACACGCACCTCTTTTTCAAGTTCCAGAGCTCCAAGTACGTCCCTGC
CGTGGAGAAAGCGTGGCCAGAGACCAAGTGGATTTACCTCTTTAGGGACC
CGTTGGAGGTCATTGCTTCCAATCTGAAGGGCGCTTGGCGCAAGATTGGG
GCGAACGCCGCGCGTAACACGACCCAGCTAGCGAACAATCAGCCAGTGTA
CAACCTCGGAGGGCCCTGCGTACGCGGGGTCAGGGGGTCCCCGAAAGTTC
CGGGCGGTAAGCCCACGCCCCCTCCGCCTCAAGTGTTGGTGAACGCCTGC
GTGAAGCAGCTGGAGTCCTTGAATCAAGTAGCGCTTGAGCAGATTCAGGA
TGGATCTCCCAACGGGCTGGTGGTGGAGTATCGACAGCTGCCGGAGGTGA
TTTCCGAGTTCGTGTACCCCGTGCACTTCGGCATGGCCACAACAGATGCA
GAGCGAGAGGAGTCGAAGCAGTGGATGGAACCAGTGACCCACGTGTATTC
GAAGGGTATGGCTACACCACAAGAGGAAGCCGTTTCGAAGGATTTCGAGC
AGGGGATGGATCTCCAAGTGAAGGAAGAGGGAAGCGACATCGCCATGAGG
GACGCGGCGGCTTCGATGTGCGAGAACTACCGGAAGCTGGTGGGGCTGCA
ACGATGGCGTAAGGAGGACGAGGGCGGGACCATGGGGACGTGCAGATGA
back to top