mRNA_A-nodosum_M_contig1197.11.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1197.11.1
Unique NamemRNA_A-nodosum_M_contig1197.11.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1197.11.1 vs. uniprot
Match: D7G7Y9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Y9_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 9.850e-18
Identity = 80/222 (36.04%), Postives = 104/222 (46.85%), Query Frame = 3 
Query:   27 PSPERPRSSSPNQLRGLIDCTSPPRAAPVVTESLPSNFCA-AQPEPN----------SEKLLTSWFQPSSYNSARTINRRSRAPPSKGENVHLQQGRRGKRPWADLLADHHMPRETN---KAQSERDQGSLSAWLEPQRPCG-GKRRA----IVGRARDGXXXXXXXXXXXXXXEEDGDEDWMSTRLEGLDPNGAAKAKDGWTIRTKRNLTITDIALGAKRK 635
            P+   P +   N     +D TS  R  PV  +++ + F A A P P           +++LL SW QP +  S +   +R R  PS+G        R     W    +     R      +     + G+LSAWLEP++P   GKR A    +  R  DG               EDG   WMS RLEGLDP GAA+AKD W+ R +RNLT TDIALGAKRK
Sbjct:   86 PTSAEPAAGGGNNEPATVDLTSE-RPEPVGGDTMSNTFAAFANPGPLRRSNAADQVCAQQLLGSWLQPVA--SPKKAAKRRRQRPSQGAFDEPDVRRNSATAWGGASSPGRDSRGDGCGTRGNGGGNDGTLSAWLEPRQPATRGKRTAHGTSVAEREPDGGFSGDEGGG------EDGGGRWMSDRLEGLDPTGAARAKDSWSDRERRNLTCTDIALGAKRK 298
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BLAST of mRNA_A-nodosum_M_contig1197.11.1 vs. uniprot
Match: A0A6H5KWK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWK6_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 1.280e-14
Identity = 60/163 (36.81%), Postives = 79/163 (48.47%), Query Frame = 3 
Query:  171 KLLTSWFQPSSYNSARTINRRSRAPPSKGENVHLQQGRRGKRPWADLLADHHMPRE---TNKAQSERDQGSLSAWLEPQRPCGGKRRAIVG-----RARDGXXXXXXXXXXXXXXEEDGDEDWMSTRLEGLDPNGAAKAKDGWTIRTKRNLTITDIALGAKRK 635
            + L SW QP +  S +   +R R  PS+G        R     W    +     R    + ++    + G+LS WLEP +P    ++ + G     R  DG               E G   WMS RLEGLDP+GAA+AKD W+ R +RNLT TDIALGAKRK
Sbjct:  141 QFLGSWLQPVA--SPKKAAKRRRQRPSQGAFDEPDVRRNSATAWVGASSPGRDDRGDGCSTRSNGGGNDGTLSGWLEPHQPATSGKQTVRGTSVAERGSDGGFSGDKGGG------EYGSSKWMSDRLEGLDPSGAARAKDSWSDRERRNLTCTDIALGAKRK 295
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1197.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7Y9_ECTSI9.850e-1836.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KWK6_9PHAE1.280e-1436.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1197contigA-nodosum_M_contig1197:147951..149691 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1076
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-06_009500.1
Cds size453
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866614.4147987-UTR-A-nodosum_M_contig1197:147950..1482761680866614.4147987-UTR-A-nodosum_M_contig1197:147950..148276Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1197 147951..148276 +
1680866614.4426816-UTR-A-nodosum_M_contig1197:149394..1496911680866614.4426816-UTR-A-nodosum_M_contig1197:149394..149691Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1197 149395..149691 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866614.425975-CDS-A-nodosum_M_contig1197:148276..1485091680866614.425975-CDS-A-nodosum_M_contig1197:148276..148509Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1197 148277..148509 +
1680866614.4341376-CDS-A-nodosum_M_contig1197:149174..1493941680866614.4341376-CDS-A-nodosum_M_contig1197:149174..149394Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1197 149175..149394 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1197.11.1prot_A-nodosum_M_contig1197.11.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1197 148277..149394 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1197.11.1

>prot_A-nodosum_M_contig1197.11.1 ID=prot_A-nodosum_M_contig1197.11.1|Name=mRNA_A-nodosum_M_contig1197.11.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=151bp
MPRETNKAQSERDQGSLSAWLEPQRPCGGKRRAIVGRARDGRAADESPSK
EPPREEEDGDEDWMSTRLEGLDPNGAAKAKDGWTIRTKRNLTITDIALGA
KRKTQGGRGWKTTLGGGKVFVAPSQGRPALVATGQKAFKMSMSRRKKGAL
*
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mRNA from alignment at A-nodosum_M_contig1197:147951..149691+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1197.11.1 ID=mRNA_A-nodosum_M_contig1197.11.1|Name=mRNA_A-nodosum_M_contig1197.11.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1741bp|location=Sequence derived from alignment at A-nodosum_M_contig1197:147951..149691+ (Ascophyllum nodosum dioecious)
CAGTCAAACTTAGGATACGATCAAACCCAAGTCCCGAGCGACCACGCAGT
TCAAGTCCCAACCAGTTGCGTGGTCTGATAGACTGCACCAGTCCGCCACG
AGCTGCGCCTGTGGTCACCGAGTCATTGCCTTCCAACTTTTGCGCAGCAC
AGCCAGAACCCAACAGCGAGAAACTGTTGACATCGTGGTTCCAGCCCTCG
TCATACAACAGTGCTCGTACTATTAATAGAAGATCTCGGGCGCCGCCGAG
CAAGGGCGAGAACGTACATTTGCAGCAAGGAAGGCGTGGCAAAAGACCAT
GGGCAGATTTATTGGCGGATCATCATATGCCCAGAGAGACAAATAAGGCA
CAGAGCGAGAGAGACCAAGGCAGCTTGTCCGCATGGCTAGAGCCTCAACG
GCCATGCGGTGGGAAAAGGCGGGCTATCGTTGGGCGAGCGAGGGACGGAC
GAGCGGCTGATGAAAGCCCTTCAAAAGAACCACCACGAGAAGAGGAAGAC
GGTGATGAGGATTGGATGTCTACTAGGCTTGAGGGCCTCGATCCTAATGG
CGCTGCAAAGTGAGTTGATCATCGCGACCTACTGTTGTCTGCGATTTTTT
TCTTGTCTCCGGTAGCTCAGTTGGCACCTCGTAACCTTCTGACACGTTGG
GACGTGAGTTCGATCCCGGCAAACGGGATTTTTCTCACTAAAAACTAAAA
AACCAAAATAAAAATGCTCAACGGGTGGAGAACGATTAATTCGTTAGTAC
ACAAAATTCGACTTCACGGTCGACGAGGGAAAGGAATGGCTGAATCCTTC
TCGCGACAAAAATCAAGGCACGCACCGCAGAAGGAAGGTGGATTAAAAAT
CCTGTGTGACCTTCCTCCTGTGTGACCCCGGCTGGACGTCCAACGAACTT
GATGTCCAGAATGGATGGGAAGAAAAAACAAAACACACTCATCCATAAAG
TGTCATTGCCGTATCCAACCGGTCAATATATATATATCTTGAACCAACTA
TTCTCCGTATGAACTTCAAGTTCCTCTCACAAACTCGGAATTTTCGGAGG
CGTGCATATTTTTTTATAAACCTGGCCATTACATGTCGGCGCCTGTAATC
GATCTCCCAGGGCATCCGTTTGTTAGATAACAAGGCGTTTTTCGAGCGCC
ATGTATCTCGTGCGACAGTTTCAAAAGCTCGAGTGCTCCGACGTTGCGGT
CGGACACTTCGTCTGGTTTGGCAGAGCAAAGGACGGCTGGACTATCAGGA
CCAAGCGCAACCTCACCATTACAGACATAGCTCTCGGGGCAAAGCGCAAG
ACTCAAGGCGGCCGGGGCTGGAAAACCACATTAGGCGGGGGCAAGGTCTT
CGTCGCACCTTCGCAGGGAAGGCCGGCGCTTGTCGCCACCGGGCAGAAGG
CATTCAAGATGTCCATGAGCAGGCGAAAAAAAGGAGCACTTTGATCCTGA
CTTTTAACTCCCGGATTCGACGTCAGTTCGCGCAGAGGACACGGATCCTT
CGTCAGAGCTATTGATGGCCGCATGATCGCATTTCGTGCGACAAGAGCTG
TCGGCGCGTCTACAGCTCCAACCTTATTCTACCTCTGGAAACATTGGTGC
AGACGTGTCGGGCGATACTCGGGGCTCTTGTTCGTAGTATAAAAATGGTT
CGGTAAACTCGCTTGAGGACATAAATGGTCTGAAATACGATGCTTAGGAC
TGCAGTGTACCAGTACTTTGGTACCCCCTTTTGGCGCGGAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1197:147951..149691+

>mRNA_A-nodosum_M_contig1197.11.1 ID=mRNA_A-nodosum_M_contig1197.11.1|Name=mRNA_A-nodosum_M_contig1197.11.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=453bp|location=Sequence derived from alignment at A-nodosum_M_contig1197:147951..149691+ (Ascophyllum nodosum dioecious)
ATGCCCAGAGAGACAAATAAGGCACAGAGCGAGAGAGACCAAGGCAGCTT
GTCCGCATGGCTAGAGCCTCAACGGCCATGCGGTGGGAAAAGGCGGGCTA
TCGTTGGGCGAGCGAGGGACGGACGAGCGGCTGATGAAAGCCCTTCAAAA
GAACCACCACGAGAAGAGGAAGACGGTGATGAGGATTGGATGTCTACTAG
GCTTGAGGGCCTCGATCCTAATGGCGCTGCAAAAGCAAAGGACGGCTGGA
CTATCAGGACCAAGCGCAACCTCACCATTACAGACATAGCTCTCGGGGCA
AAGCGCAAGACTCAAGGCGGCCGGGGCTGGAAAACCACATTAGGCGGGGG
CAAGGTCTTCGTCGCACCTTCGCAGGGAAGGCCGGCGCTTGTCGCCACCG
GGCAGAAGGCATTCAAGATGTCCATGAGCAGGCGAAAAAAAGGAGCACTT
TGA
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