mRNA_A-nodosum_M_contig1196.5.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1196.5.1
Unique NamemRNA_A-nodosum_M_contig1196.5.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig1196.5.1 vs. uniprot
Match: A0A6H5K803_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K803_9PHAE)

HSP 1 Score: 50.1 bits (118), Expect = 1.570e-5
Identity = 21/46 (45.65%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:   16 ELSKDHVKTIKGKLPVRLDKVAKKSADLRQYVEAWDREMAAVNTYV 153
            +L+++HV  IK KL  +LDK+A+KS+D+R +++AWD+ M+ V+ +V
Sbjct:  102 QLTEEHVCIIKSKLTNKLDKLARKSSDMRPFMDAWDKRMSDVDVFV 147
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1196.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K803_9PHAE1.570e-545.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1196contigA-nodosum_M_contig1196:235940..236399 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size182
Hectar predicted targeting categoryother localisation
Exons2
Cds size180
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866613.6158192-CDS-A-nodosum_M_contig1196:235939..2360441680866613.6158192-CDS-A-nodosum_M_contig1196:235939..236044Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1196 235940..236044 -
1680866613.626273-CDS-A-nodosum_M_contig1196:236324..2363991680866613.626273-CDS-A-nodosum_M_contig1196:236324..236399Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1196 236325..236399 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1196.5.1prot_A-nodosum_M_contig1196.5.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1196 235940..236399 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1196.5.1

>prot_A-nodosum_M_contig1196.5.1 ID=prot_A-nodosum_M_contig1196.5.1|Name=mRNA_A-nodosum_M_contig1196.5.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=60bp
LPAGCELSKDHVKTIKGKLPVRLDKVAKKSADLRQYVEAWDREMAAVNTY
VDLSKNLSR*
back to top

mRNA from alignment at A-nodosum_M_contig1196:235940..236399-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1196.5.1 ID=mRNA_A-nodosum_M_contig1196.5.1|Name=mRNA_A-nodosum_M_contig1196.5.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=460bp|location=Sequence derived from alignment at A-nodosum_M_contig1196:235940..236399- (Ascophyllum nodosum dioecious)
TTGCCGGCAGGATGCGAGCTCTCGAAGGATCATGTTAAGACCATCAAAGG
CAAACTGCCTGTTCGCCTCGACAAGGTATACACACGTTGGCATTGTTTTC
GCCTGAGTGCGTTCTTGTCATCTGAATAGAGCGAGAACAGATACACGTGC
ACACTGCGCATTTGTTGTATCCACTAAATTGTGTGTCGACTTCTTGCTAC
TTGTTCTCCGTTCCTGATCGCGCACGGGTAATTTTTTTTATATACAGAAG
TCTCCACTGCCCAGTTTGTCCTGTGTCCGGCCGTCAACACCTCGCTGTTG
TTCCCATGAACTTGTGCGCCTGGTTCGACGTCAATTCTGCGTTGCCTTTT
TTCAGGTAGCGAAGAAGAGCGCCGACCTTCGACAGTACGTCGAAGCATGG
GATCGAGAGATGGCCGCCGTGAACACCTACGTGGACCTCAGCAAGAATCT
TTCCCGATAA
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig1196:235940..236399-

>mRNA_A-nodosum_M_contig1196.5.1 ID=mRNA_A-nodosum_M_contig1196.5.1|Name=mRNA_A-nodosum_M_contig1196.5.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=180bp|location=Sequence derived from alignment at A-nodosum_M_contig1196:235940..236399- (Ascophyllum nodosum dioecious)
TTGCCGGCAGGATGCGAGCTCTCGAAGGATCATGTTAAGACCATCAAAGG
CAAACTGCCTGTTCGCCTCGACAAGGTAGCGAAGAAGAGCGCCGACCTTC
GACAGTACGTCGAAGCATGGGATCGAGAGATGGCCGCCGTGAACACCTAC
GTGGACCTCAGCAAGAATCTTTCCCGATAA
back to top