mRNA_A-nodosum_M_contig1196.3.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1196.3.1 vs. uniprot
Match: A0A6H5K0E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0E9_9PHAE) HSP 1 Score: 113 bits (283), Expect = 3.080e-27 Identity = 47/91 (51.65%), Postives = 64/91 (70.33%), Query Frame = 1
Query: 4 FHCIDPNAGDELYGCQRPPATVPPCSSDVKQTWIVEDKTHAHALAEAINCSGGSFQVKWIGNISIDDTIYVVDGTDLQIRGFDTNAVLSGN 276
F C+DP+A DE Y C+ P T PCS++V+QTW+V+D A ALA A+NCSGGSF+V+W G + ++ YVVDGT L I G ++A + GN
Sbjct: 120 FDCLDPDADDEFYECEAAPPTALPCSAEVQQTWVVDDSAQAQALASAVNCSGGSFEVEWRGTVVVESVFYVVDGTTLSITGDGSSAAIDGN 210
BLAST of mRNA_A-nodosum_M_contig1196.3.1 vs. uniprot
Match: D7G2X5_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X5_ECTSI) HSP 1 Score: 108 bits (270), Expect = 1.750e-25 Identity = 46/91 (50.55%), Postives = 63/91 (69.23%), Query Frame = 1
Query: 4 FHCIDPNAGDELYGCQRPPATVPPCSSDVKQTWIVEDKTHAHALAEAINCSGGSFQVKWIGNISIDDTIYVVDGTDLQIRGFDTNAVLSGN 276
F C+DP+A +EL+ C+ P PC++D +QTW+VE T A ALA A+NCSGG F+V+W G + + YVVDGT L I G D++AV+ GN
Sbjct: 109 FECLDPSANEELHDCEPSPQLALPCTADAQQTWVVESSTQAQALAAAVNCSGGLFEVEWRGRVVVGQPFYVVDGTVLTISGADSSAVVEGN 199
BLAST of mRNA_A-nodosum_M_contig1196.3.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI) HSP 1 Score: 104 bits (260), Expect = 3.940e-24 Identity = 46/93 (49.46%), Postives = 64/93 (68.82%), Query Frame = 1
Query: 1 DFHCIDPNAGDELYGCQRPPATVPPCSSDVKQTWIVEDKTHAHALAEAINCSGGSFQVKWIGNISIDDTIYVVDGTDLQIRGF-DTNAVLSGN 276
+ C+DP+A +ELY C+ PP T PC +D + W+V D A ALA A+NCSGGSF+V+W+G + +++TI+V DGT L I G +NA L GN
Sbjct: 192 ELDCVDPSAPEELYECEAPPITTTPCPADSEWNWVVGDSEQALALALAVNCSGGSFEVEWVGTVVVNETIFVTDGTVLTITGAAGSNAALDGN 284
BLAST of mRNA_A-nodosum_M_contig1196.3.1 vs. uniprot
Match: A0A6H5K7Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z1_9PHAE) HSP 1 Score: 103 bits (257), Expect = 9.990e-24 Identity = 43/91 (47.25%), Postives = 62/91 (68.13%), Query Frame = 1
Query: 4 FHCIDPNAGDELYGCQRPPATVPPCSSDVKQTWIVEDKTHAHALAEAINCSGGSFQVKWIGNISIDDTIYVVDGTDLQIRGFDTNAVLSGN 276
F C+DP+A +EL+ C+ P PC++D +QTW+VE A ALA A+NCSGG F+V+W G + + + VVDGT L + G D++AV+ GN
Sbjct: 168 FECLDPSASEELHDCEPSPPLALPCTADAQQTWVVESSAQAQALAAAVNCSGGLFEVEWRGRVVVGEPFNVVDGTVLTVSGADSSAVVEGN 258
BLAST of mRNA_A-nodosum_M_contig1196.3.1 vs. uniprot
Match: D7FTL7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTL7_ECTSI) HSP 1 Score: 102 bits (254), Expect = 2.530e-23 Identity = 42/91 (46.15%), Postives = 62/91 (68.13%), Query Frame = 1
Query: 4 FHCIDPNAGDELYGCQRPPATVPPCSSDVKQTWIVEDKTHAHALAEAINCSGGSFQVKWIGNISIDDTIYVVDGTDLQIRGFDTNAVLSGN 276
F C+DP + + Y CQ PP PCS++V+Q+W+V D A ALA A+NCSGGSF+V+W G++ ++ IYV DGT + + G + AV+ G+
Sbjct: 15 FDCLDPGSSNGFYECQEPPPATLPCSAEVQQSWVVADSAEALALAAAVNCSGGSFEVEWRGSVVVESPIYVRDGTIVTVTGVGSTAVIDGH 105
BLAST of mRNA_A-nodosum_M_contig1196.3.1 vs. uniprot
Match: A0A6H5K1P8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1P8_9PHAE) HSP 1 Score: 98.6 bits (244), Expect = 5.690e-22 Identity = 42/85 (49.41%), Postives = 60/85 (70.59%), Query Frame = 1
Query: 10 CIDPNAGDELYGCQRPPATVPPCSSDVKQTWIVEDKTHAHALAEAINCSGGSFQVKWIGNISIDDTIYVVDGTDLQIRGFDTNAV 264
C+DP+AGDE Y C +P PCS +V+QTW+++++ AHALA A+NCSGGSFQV+W G + ++ I + GT L I G D++ V
Sbjct: 31 CLDPSAGDEFYECSQPSPEALPCSLEVQQTWVLDEQEQAHALAAAVNCSGGSFQVEWRGTVVMEIPIVIGAGTVLTISGVDSSTV 115
BLAST of mRNA_A-nodosum_M_contig1196.3.1 vs. uniprot
Match: D7FTI5_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI5_ECTSI) HSP 1 Score: 97.8 bits (242), Expect = 1.060e-21 Identity = 46/97 (47.42%), Postives = 63/97 (64.95%), Query Frame = 1
Query: 10 CIDPNAGDELYGCQRPPATVPPCSSDVKQTWIVEDKTHAHALAEAINCSGGSFQVKWIGNISIDDTIYVVDGTDLQIRGF--------DTNAVLSGN 276
C+DP+AGDE Y C P PCS++V+QTW+V+++ AHALA A+NCSGGSF+V+W G + ++ I V GT L I G D+ AV+ GN
Sbjct: 271 CLDPSAGDEFYECSPPSPEALPCSAEVQQTWVVDEQEEAHALAAAVNCSGGSFEVEWSGTVVMEMPIVVGAGTVLTITGAGSSTVGDDDSGAVIHGN 367
BLAST of mRNA_A-nodosum_M_contig1196.3.1 vs. uniprot
Match: A0A6H5JY65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY65_9PHAE) HSP 1 Score: 73.2 bits (178), Expect = 4.790e-13 Identity = 32/67 (47.76%), Postives = 43/67 (64.18%), Query Frame = 1
Query: 73 PCSSDVKQTWIVEDKTHAHALAEAINCSGGSFQVKWIGNISIDDTIYVVDGTDLQIRGFDTNAVLSG 273
PCS D++ +W+V + A LA A NCSGG F V+WIG++ I +TIY+VD T + I G AV G
Sbjct: 104 PCSPDLRVSWVVNNSATASELARASNCSGGVFDVEWIGHVEIPETIYIVDDTVMNITGAGAGAVADG 170
BLAST of mRNA_A-nodosum_M_contig1196.3.1 vs. uniprot
Match: D7FV90_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV90_ECTSI) HSP 1 Score: 72.4 bits (176), Expect = 8.880e-13 Identity = 37/96 (38.54%), Postives = 52/96 (54.17%), Query Frame = 1
Query: 4 FHCIDPNAGDELYGCQRPPATVPPCSSDVKQTWIVEDKTHAHALAEAINCSGGSFQVKWIGNISIDDTIYVVDGTDLQIRGFDTNA---VLSGNLE 282
F C+DP+ + CS D+ + W+VED A LA AINC+GG+F V+W G++ + T++V GT + I G DT A V GN E
Sbjct: 199 FDCLDPS-----FNTTECVTNTTACSPDLSREWLVEDTADAIELANAINCTGGTFDVEWRGSVIVPQTLWVSQGTTVNITGVDTTASPAVADGNGE 289
BLAST of mRNA_A-nodosum_M_contig1196.3.1 vs. uniprot
Match: A0A6H5JLP6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLP6_9PHAE) HSP 1 Score: 65.9 bits (159), Expect = 1.770e-10 Identity = 33/96 (34.38%), Postives = 51/96 (53.12%), Query Frame = 1
Query: 4 FHCIDPNAGDELYGCQRPPATVPPCSSDVKQTWIVEDKTHAHALAEAINCSGGSFQVKWIGNISIDDTIYVVDGTDLQIRGFDTNA---VLSGNLE 282
F C+DP+ + C+ D+ + W+VE+ A LA AINC+GG+F V+W G++ + T+++ GT + I G T A V GN E
Sbjct: 93 FDCLDPS-----FNTTECVTNTTACAPDLSREWLVENTADAIELANAINCTGGTFDVEWRGSVLVPQTLWISQGTTVNITGVATTASPAVADGNGE 183 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1196.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1196.3.1 >prot_A-nodosum_M_contig1196.3.1 ID=prot_A-nodosum_M_contig1196.3.1|Name=mRNA_A-nodosum_M_contig1196.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=95bp DFHCIDPNAGDELYGCQRPPATVPPCSSDVKQTWIVEDKTHAHALAEAINback to top mRNA from alignment at A-nodosum_M_contig1196:126791..127077- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1196.3.1 ID=mRNA_A-nodosum_M_contig1196.3.1|Name=mRNA_A-nodosum_M_contig1196.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=287bp|location=Sequence derived from alignment at A-nodosum_M_contig1196:126791..127077- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1196:126791..127077- >mRNA_A-nodosum_M_contig1196.3.1 ID=mRNA_A-nodosum_M_contig1196.3.1|Name=mRNA_A-nodosum_M_contig1196.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=285bp|location=Sequence derived from alignment at A-nodosum_M_contig1196:126791..127077- (Ascophyllum nodosum dioecious)back to top |