mRNA_A-nodosum_M_contig1196.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1196.3.1
Unique NamemRNA_A-nodosum_M_contig1196.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1196.3.1 vs. uniprot
Match: A0A6H5K0E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0E9_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 3.080e-27
Identity = 47/91 (51.65%), Postives = 64/91 (70.33%), Query Frame = 1
Query:    4 FHCIDPNAGDELYGCQRPPATVPPCSSDVKQTWIVEDKTHAHALAEAINCSGGSFQVKWIGNISIDDTIYVVDGTDLQIRGFDTNAVLSGN 276
            F C+DP+A DE Y C+  P T  PCS++V+QTW+V+D   A ALA A+NCSGGSF+V+W G + ++   YVVDGT L I G  ++A + GN
Sbjct:  120 FDCLDPDADDEFYECEAAPPTALPCSAEVQQTWVVDDSAQAQALASAVNCSGGSFEVEWRGTVVVESVFYVVDGTTLSITGDGSSAAIDGN 210          
BLAST of mRNA_A-nodosum_M_contig1196.3.1 vs. uniprot
Match: D7G2X5_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X5_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 1.750e-25
Identity = 46/91 (50.55%), Postives = 63/91 (69.23%), Query Frame = 1
Query:    4 FHCIDPNAGDELYGCQRPPATVPPCSSDVKQTWIVEDKTHAHALAEAINCSGGSFQVKWIGNISIDDTIYVVDGTDLQIRGFDTNAVLSGN 276
            F C+DP+A +EL+ C+  P    PC++D +QTW+VE  T A ALA A+NCSGG F+V+W G + +    YVVDGT L I G D++AV+ GN
Sbjct:  109 FECLDPSANEELHDCEPSPQLALPCTADAQQTWVVESSTQAQALAAAVNCSGGLFEVEWRGRVVVGQPFYVVDGTVLTISGADSSAVVEGN 199          
BLAST of mRNA_A-nodosum_M_contig1196.3.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 3.940e-24
Identity = 46/93 (49.46%), Postives = 64/93 (68.82%), Query Frame = 1
Query:    1 DFHCIDPNAGDELYGCQRPPATVPPCSSDVKQTWIVEDKTHAHALAEAINCSGGSFQVKWIGNISIDDTIYVVDGTDLQIRGF-DTNAVLSGN 276
            +  C+DP+A +ELY C+ PP T  PC +D +  W+V D   A ALA A+NCSGGSF+V+W+G + +++TI+V DGT L I G   +NA L GN
Sbjct:  192 ELDCVDPSAPEELYECEAPPITTTPCPADSEWNWVVGDSEQALALALAVNCSGGSFEVEWVGTVVVNETIFVTDGTVLTITGAAGSNAALDGN 284          
BLAST of mRNA_A-nodosum_M_contig1196.3.1 vs. uniprot
Match: A0A6H5K7Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z1_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 9.990e-24
Identity = 43/91 (47.25%), Postives = 62/91 (68.13%), Query Frame = 1
Query:    4 FHCIDPNAGDELYGCQRPPATVPPCSSDVKQTWIVEDKTHAHALAEAINCSGGSFQVKWIGNISIDDTIYVVDGTDLQIRGFDTNAVLSGN 276
            F C+DP+A +EL+ C+  P    PC++D +QTW+VE    A ALA A+NCSGG F+V+W G + + +   VVDGT L + G D++AV+ GN
Sbjct:  168 FECLDPSASEELHDCEPSPPLALPCTADAQQTWVVESSAQAQALAAAVNCSGGLFEVEWRGRVVVGEPFNVVDGTVLTVSGADSSAVVEGN 258          
BLAST of mRNA_A-nodosum_M_contig1196.3.1 vs. uniprot
Match: D7FTL7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTL7_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 2.530e-23
Identity = 42/91 (46.15%), Postives = 62/91 (68.13%), Query Frame = 1
Query:    4 FHCIDPNAGDELYGCQRPPATVPPCSSDVKQTWIVEDKTHAHALAEAINCSGGSFQVKWIGNISIDDTIYVVDGTDLQIRGFDTNAVLSGN 276
            F C+DP + +  Y CQ PP    PCS++V+Q+W+V D   A ALA A+NCSGGSF+V+W G++ ++  IYV DGT + + G  + AV+ G+
Sbjct:   15 FDCLDPGSSNGFYECQEPPPATLPCSAEVQQSWVVADSAEALALAAAVNCSGGSFEVEWRGSVVVESPIYVRDGTIVTVTGVGSTAVIDGH 105          
BLAST of mRNA_A-nodosum_M_contig1196.3.1 vs. uniprot
Match: A0A6H5K1P8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1P8_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 5.690e-22
Identity = 42/85 (49.41%), Postives = 60/85 (70.59%), Query Frame = 1
Query:   10 CIDPNAGDELYGCQRPPATVPPCSSDVKQTWIVEDKTHAHALAEAINCSGGSFQVKWIGNISIDDTIYVVDGTDLQIRGFDTNAV 264
            C+DP+AGDE Y C +P     PCS +V+QTW+++++  AHALA A+NCSGGSFQV+W G + ++  I +  GT L I G D++ V
Sbjct:   31 CLDPSAGDEFYECSQPSPEALPCSLEVQQTWVLDEQEQAHALAAAVNCSGGSFQVEWRGTVVMEIPIVIGAGTVLTISGVDSSTV 115          
BLAST of mRNA_A-nodosum_M_contig1196.3.1 vs. uniprot
Match: D7FTI5_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI5_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 1.060e-21
Identity = 46/97 (47.42%), Postives = 63/97 (64.95%), Query Frame = 1
Query:   10 CIDPNAGDELYGCQRPPATVPPCSSDVKQTWIVEDKTHAHALAEAINCSGGSFQVKWIGNISIDDTIYVVDGTDLQIRGF--------DTNAVLSGN 276
            C+DP+AGDE Y C  P     PCS++V+QTW+V+++  AHALA A+NCSGGSF+V+W G + ++  I V  GT L I G         D+ AV+ GN
Sbjct:  271 CLDPSAGDEFYECSPPSPEALPCSAEVQQTWVVDEQEEAHALAAAVNCSGGSFEVEWSGTVVMEMPIVVGAGTVLTITGAGSSTVGDDDSGAVIHGN 367          
BLAST of mRNA_A-nodosum_M_contig1196.3.1 vs. uniprot
Match: A0A6H5JY65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY65_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 4.790e-13
Identity = 32/67 (47.76%), Postives = 43/67 (64.18%), Query Frame = 1
Query:   73 PCSSDVKQTWIVEDKTHAHALAEAINCSGGSFQVKWIGNISIDDTIYVVDGTDLQIRGFDTNAVLSG 273
            PCS D++ +W+V +   A  LA A NCSGG F V+WIG++ I +TIY+VD T + I G    AV  G
Sbjct:  104 PCSPDLRVSWVVNNSATASELARASNCSGGVFDVEWIGHVEIPETIYIVDDTVMNITGAGAGAVADG 170          
BLAST of mRNA_A-nodosum_M_contig1196.3.1 vs. uniprot
Match: D7FV90_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV90_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 8.880e-13
Identity = 37/96 (38.54%), Postives = 52/96 (54.17%), Query Frame = 1
Query:    4 FHCIDPNAGDELYGCQRPPATVPPCSSDVKQTWIVEDKTHAHALAEAINCSGGSFQVKWIGNISIDDTIYVVDGTDLQIRGFDTNA---VLSGNLE 282
            F C+DP+     +           CS D+ + W+VED   A  LA AINC+GG+F V+W G++ +  T++V  GT + I G DT A   V  GN E
Sbjct:  199 FDCLDPS-----FNTTECVTNTTACSPDLSREWLVEDTADAIELANAINCTGGTFDVEWRGSVIVPQTLWVSQGTTVNITGVDTTASPAVADGNGE 289          
BLAST of mRNA_A-nodosum_M_contig1196.3.1 vs. uniprot
Match: A0A6H5JLP6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLP6_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 1.770e-10
Identity = 33/96 (34.38%), Postives = 51/96 (53.12%), Query Frame = 1
Query:    4 FHCIDPNAGDELYGCQRPPATVPPCSSDVKQTWIVEDKTHAHALAEAINCSGGSFQVKWIGNISIDDTIYVVDGTDLQIRGFDTNA---VLSGNLE 282
            F C+DP+     +           C+ D+ + W+VE+   A  LA AINC+GG+F V+W G++ +  T+++  GT + I G  T A   V  GN E
Sbjct:   93 FDCLDPS-----FNTTECVTNTTACAPDLSREWLVENTADAIELANAINCTGGTFDVEWRGSVLVPQTLWISQGTTVNITGVATTASPAVADGNGE 183          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1196.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5K0E9_9PHAE3.080e-2751.65Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G2X5_ECTSI1.750e-2550.55Adhesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
D8LSC0_ECTSI3.940e-2449.46Polymorphic Outer membrane protein G/I family n=3 ... [more]
A0A6H5K7Z1_9PHAE9.990e-2447.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTL7_ECTSI2.530e-2346.15Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5K1P8_9PHAE5.690e-2249.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTI5_ECTSI1.060e-2147.42Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
A0A6H5JY65_9PHAE4.790e-1347.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FV90_ECTSI8.880e-1338.54Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5JLP6_9PHAE1.770e-1034.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1196contigA-nodosum_M_contig1196:126791..127077 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LHQ8
PFAMsBeta_helix,Chlam_PMP
Model size289
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.08e-29
EggNOG OGs2BFIX@1|root,2S176@2759|Eukaryota
Cds size285
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866613.5847278-CDS-A-nodosum_M_contig1196:126792..1270771680866613.5847278-CDS-A-nodosum_M_contig1196:126792..127077Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1196 126793..127077 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1196.3.1prot_A-nodosum_M_contig1196.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1196 126793..127077 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1196.3.1

>prot_A-nodosum_M_contig1196.3.1 ID=prot_A-nodosum_M_contig1196.3.1|Name=mRNA_A-nodosum_M_contig1196.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=95bp
DFHCIDPNAGDELYGCQRPPATVPPCSSDVKQTWIVEDKTHAHALAEAIN
CSGGSFQVKWIGNISIDDTIYVVDGTDLQIRGFDTNAVLSGNLEK
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mRNA from alignment at A-nodosum_M_contig1196:126791..127077-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1196.3.1 ID=mRNA_A-nodosum_M_contig1196.3.1|Name=mRNA_A-nodosum_M_contig1196.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=287bp|location=Sequence derived from alignment at A-nodosum_M_contig1196:126791..127077- (Ascophyllum nodosum dioecious)
GACTTTCACTGCATCGACCCCAACGCTGGTGACGAGTTGTACGGATGCCA AAGACCGCCTGCCACGGTGCCTCCTTGTTCATCGGATGTCAAGCAAACTT GGATTGTAGAGGACAAGACACACGCACATGCTTTGGCAGAAGCGATCAAC TGCTCTGGGGGCTCGTTCCAAGTGAAATGGATTGGGAATATTTCGATAGA CGACACAATCTATGTCGTTGATGGTACCGATCTCCAAATACGCGGCTTCG ATACCAACGCCGTTTTAAGCGGGAACCTAGAGAAGCG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1196:126791..127077-

>mRNA_A-nodosum_M_contig1196.3.1 ID=mRNA_A-nodosum_M_contig1196.3.1|Name=mRNA_A-nodosum_M_contig1196.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=285bp|location=Sequence derived from alignment at A-nodosum_M_contig1196:126791..127077- (Ascophyllum nodosum dioecious)
GACTTTCACTGCATCGACCCCAACGCTGGTGACGAGTTGTACGGATGCCA
AAGACCGCCTGCCACGGTGCCTCCTTGTTCATCGGATGTCAAGCAAACTT
GGATTGTAGAGGACAAGACACACGCACATGCTTTGGCAGAAGCGATCAAC
TGCTCTGGGGGCTCGTTCCAAGTGAAATGGATTGGGAATATTTCGATAGA
CGACACAATCTATGTCGTTGATGGTACCGATCTCCAAATACGCGGCTTCG
ATACCAACGCCGTTTTAAGCGGGAACCTAGAGAAG
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