mRNA_A-nodosum_M_contig1196.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1196.1.1
Unique NamemRNA_A-nodosum_M_contig1196.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1196.1.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI)

HSP 1 Score: 333 bits (855), Expect = 2.200e-97
Identity = 163/276 (59.06%), Postives = 209/276 (75.72%), Query Frame = 2
Query:    2 LSASCVVNIDFHDRLLFATLWPLVVILVLGVTYKIAAHRNNRSQAAIQNVRKKHLSAVVLLTLFVYSNVSSILFQTFTCEHLEDGKYYLRADYRIECDSGKHEKIQVYATIMMIVYTLGIPAFYATLLIRNHDILAKDEASRNDCPRVLSTSSLWRPYKPTVFYFEVVECARRVLLVGVVVFFNPNTVSQIAVTLILAFTFVVITEILDPYTSTWDTWLSRTGHVVVFFSVYVALLLKVDVSSERRDSQRTFEMILLFFNGCMIAAVVIEALLMLC 829
            LSA C+V +DFHDRLL +T+ P+V +L L  TY  A   N  +   +Q +  +H+S V+LLT+FVYS+VSS LFQTF CE L DG+ YLRADYRI CDS KH+ +QVYA +M++VYT+GIPA Y  LL R+ D+L +  A R +  RV+STS LW+PYKP+VFY+EV+EC RRVLL GVVVF  PNT  QIA+TL++AF FVV++E L PY S WDTWLSR GH VVF S+YVALLLKVDVS+ER +SQR FE++L+  + CMI  +VIE +++ C
Sbjct: 1770 LSAGCIVVVDFHDRLLISTIGPIVALLFLCWTYAAATRINRGATETLQVIWNRHVSMVLLLTVFVYSSVSSTLFQTFACESLADGETYLRADYRITCDSSKHKALQVYAGVMVVVYTVGIPALYGVLLFRDRDVLKRSGADREETARVISTSELWKPYKPSVFYYEVIECGRRVLLAGVVVFIYPNTAPQIAITLLMAFAFVVVSEGLAPYASRWDTWLSRMGHAVVFVSMYVALLLKVDVSNERVESQRVFEVVLVAAHACMILVIVIETVVLTC 2045          
BLAST of mRNA_A-nodosum_M_contig1196.1.1 vs. uniprot
Match: D7FHH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH1_ECTSI)

HSP 1 Score: 318 bits (816), Expect = 2.390e-94
Identity = 152/276 (55.07%), Postives = 203/276 (73.55%), Query Frame = 2
Query:    2 LSASCVVNIDFHDRLLFATLWPLVVILVLGVTYKIAAHRNNRSQAAIQNVRKKHLSAVVLLTLFVYSNVSSILFQTFTCEHLEDGKYYLRADYRIECDSGKHEKIQVYATIMMIVYTLGIPAFYATLLIRNHDILAKDEASRNDCPRVLSTSSLWRPYKPTVFYFEVVECARRVLLVGVVVFFNPNTVSQIAVTLILAFTFVVITEILDPYTSTWDTWLSRTGHVVVFFSVYVALLLKVDVSSERRDSQRTFEMILLFFNGCMIAAVVIEALLMLC 829
            LSA CV+++DFHDRLL +T+ P++ +L L  TY+  +  N  + A +Q V  +H+S V+LL   VYS VSS++FQTF C+ LE G  YLRADYRIECDS KH+  +VYA  M+++Y +GIPAFY  LL+R+ D+L KD   R D PRV S S+LW+PY+P+V+Y+EV+EC RR+LL G+VVF  PNT +QIA+TLI+   F V++E L PY   WDTW+SR  H VVF SVYVALLLKVDVS+E+  SQ+ FE +L+  + CMI AVV+E +L+ C
Sbjct:  720 LSAGCVMDLDFHDRLLLSTIGPIMALLFLAATYRAGSRINRGNAATLQLVWDRHVSMVLLLVFLVYSGVSSVVFQTFACDQLEGGGEYLRADYRIECDSSKHQGFRVYAGFMILLYPVGIPAFYGALLLRDRDVLEKDPDGREDPPRVASISNLWQPYRPSVYYYEVIECGRRILLTGLVVFIYPNTAAQIAITLIMTVVFAVLSEALRPYAQAWDTWVSRVSHAVVFMSVYVALLLKVDVSNEKGSSQKVFEAVLVAAHACMILAVVVETILLGC 995          
BLAST of mRNA_A-nodosum_M_contig1196.1.1 vs. uniprot
Match: D7G2Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Z8_ECTSI)

HSP 1 Score: 315 bits (807), Expect = 4.650e-93
Identity = 154/273 (56.41%), Postives = 198/273 (72.53%), Query Frame = 2
Query:    2 LSASCVVNIDFHDRLLFATLWPLVVILVLGVTYKIAAHRNNRSQAAIQNVRKKHLSAVVLLTLFVYSNVSSILFQTFTCEHLEDGKYYLRADYRIECDSGKHEKIQVYATIMMIVYTLGIPAFYATLLIRNHDILAKDEASRNDCPRVLSTSSLWRPYKPTVFYFEVVECARRVLLVGVVVFFNPNTVSQIAVTLILAFTFVVITEILDPYTSTWDTWLSRTGHVVVFFSVYVALLLKVDVSSERRDSQRTFEMILLFFNGCMIAAVVIEALL 820
            LSA CV ++DFHDRLL +T+ P+V +L L   Y  AA  ++RS   +Q V  KH+S V+LLT  VY++VS++LFQTF CE L+D K YLRADYRIECDS KH   QVYA  M+++YT+GIPA Y   L R+ D+L +DEA R    R+  T+ LW+PY+P+VFY+EV+ECARRVLL GVVVF  PNT +QIAV L++A  F +I+E L PY S WDTWL R GH VV  S+YVALLLKVDVS ER  SQR FE +L+  + CM+  V++E ++
Sbjct:  680 LSAGCVFDVDFHDRLLVSTIAPIVGLLFLAAVYAAAARNSHRSSEDLQRVWHKHVSLVLLLTFLVYASVSAVLFQTFACEELDDRKNYLRADYRIECDSPKHSAFQVYAGFMIVLYTVGIPALYGGFLFRDSDVLRRDEADREQLARIAPTADLWKPYRPSVFYYEVIECARRVLLAGVVVFIYPNTAAQIAVALLIAVVFAMISEALAPYASRWDTWLCRMGHAVVAVSMYVALLLKVDVSDERASSQRVFESLLVAAHVCMVGVVLLEVIM 952          
BLAST of mRNA_A-nodosum_M_contig1196.1.1 vs. uniprot
Match: D7FHG7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG7_ECTSI)

HSP 1 Score: 319 bits (817), Expect = 2.680e-92
Identity = 152/276 (55.07%), Postives = 203/276 (73.55%), Query Frame = 2
Query:    2 LSASCVVNIDFHDRLLFATLWPLVVILVLGVTYKIAAHRNNRSQAAIQNVRKKHLSAVVLLTLFVYSNVSSILFQTFTCEHLEDGKYYLRADYRIECDSGKHEKIQVYATIMMIVYTLGIPAFYATLLIRNHDILAKDEASRNDCPRVLSTSSLWRPYKPTVFYFEVVECARRVLLVGVVVFFNPNTVSQIAVTLILAFTFVVITEILDPYTSTWDTWLSRTGHVVVFFSVYVALLLKVDVSSERRDSQRTFEMILLFFNGCMIAAVVIEALLMLC 829
            +SA CV+N+DFHDRLL +T+ P++ +L L  TY+  +  N  + A +Q V  +H+S V+LL   VYS+VSS++FQTF C+ LE G  YLRADYRIECDS KH+  +VYA  M+++Y +GIPAFY  LL R+ D+L KD   R D PRV S S+LW+PY+P+V+Y+EV+EC RR+LL G+VVF  PNT +QIA+TLI+   F V++E L PY   WDTW+SR  H VVF SVYVALLLKVDVS+E+  SQ+ FE +L+  + CMI AVV+E +L+ C
Sbjct: 2458 ISAGCVMNLDFHDRLLLSTIGPIMALLCLAATYRAGSRINRGNAATLQLVWDRHVSMVLLLVFVVYSSVSSVVFQTFACDQLEGGGEYLRADYRIECDSSKHQGFRVYAGFMILLYPVGIPAFYGALLFRDRDVLEKDPDGREDPPRVASISNLWQPYRPSVYYYEVIECGRRILLTGLVVFIYPNTAAQIAITLIMTVVFAVLSEALRPYAQAWDTWVSRVSHAVVFMSVYVALLLKVDVSNEKGSSQKVFEAVLVAAHACMILAVVVETILLGC 2733          
BLAST of mRNA_A-nodosum_M_contig1196.1.1 vs. uniprot
Match: D8LH65_ECTSI (Polymorphic outer membrane protein G/I family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH65_ECTSI)

HSP 1 Score: 305 bits (780), Expect = 3.300e-92
Identity = 151/274 (55.11%), Postives = 202/274 (73.72%), Query Frame = 2
Query:    2 LSASCVVNIDFHDRLLFATLWPLVVILVLGVTYKIAAHRNNRSQAAIQNVRKKHLSAVVLLTLFVYSNVSSILFQTFTCEHLEDGKYYLRADYRIECDSGKHEKIQVYATIMMIVYTLGIPAFYATLLIRNHDILAKDEASRNDCPRVLSTSSLWRPYKPTVFYFEVVECARRVLLVGVVVFFNPNTVSQIAVTLILAFTFVVITEILDPYTSTWDTWLSRTGHVVVFFSVYVALLLKVDVSSERRDSQRTFEMILLFFNGCMIAAVVIEALLM 823
            LS  CVV  DFHDRLL +T+ P+V +++L  TY  A   +  S   +Q+V  KH+S V+LLT FVYSNVS+ILF+ F CE L +   YLR+DYRIECDS KH+  ++ A  M+++YT+GIP  YA L+ R+  +L KDEA R D PRV STS LW+PY+P+VFY+EV EC  RVLL GVVVF  P+T +QIAVTL++AF FV+++E+L PY+S WD W++R GHVVVF S++VALLLKVDV+ E   SQ+ FE +L+  + CM+  VVIEA+++
Sbjct:  402 LSVGCVVRTDFHDRLLVSTIGPIVGLMLLTCTYACALQIHQGSSQNLQSVWNKHVSMVLLLTFFVYSNVSAILFKAFACEQLGES-IYLRSDYRIECDSPKHQAFKINAGFMIVLYTVGIPTLYAGLVFRDRHLLKKDEADREDTPRVTSTSGLWKPYRPSVFYYEVFECGWRVLLAGVVVFIYPDTAAQIAVTLMIAFAFVIVSEVLSPYSSKWDRWVNRMGHVVVFVSMFVALLLKVDVADEDASSQKVFESVLVAAHVCMVLVVVIEAIVL 674          
BLAST of mRNA_A-nodosum_M_contig1196.1.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI)

HSP 1 Score: 309 bits (792), Expect = 4.270e-89
Identity = 159/275 (57.82%), Postives = 202/275 (73.45%), Query Frame = 2
Query:    2 LSASCVVNIDFHDRLLFATLWPLVVILVLGVTYKIAAHRNNRSQAAIQNVRKKHLSAVVLLTLFVYSNVSSILFQTFTCEHLEDGKYYLRADYRIECDSGKHEKIQVYATIMMIVYTLGIPAFYATLLIRNHDILAKDEASRNDC-PRVLSTSSLWRPYKPTVFYFEVVECARRVLLVGVVVFFNPNTVSQIAVTLILAFTFVVITEILDPYTSTWDTWLSRTGHVVVFFSVYVALLLKVDVSSERRDSQRTFEMILLFFNGCMIAAVVIEALLM 823
            LSA CVV++DFHDRLL AT+ P+   L+L  TY  A   +  +   ++NVR KH+  V+LLT FVYS+VS+ LF+TF CE LEDGK YL ADYRIECDS KH++ +VYA  M+++YT GIPA Y+ LL R+ D+L   EA+  D   R  STS LW+PYKP+VFY+EVVECARRVLL GVVVF  PN+ +QIA+TLI+AFTFV+I+E L PY S WDTW++R GHVVV  S+Y+ALLLKVDVS ER  SQ  FE +L+  +  M+   V E L++
Sbjct: 1314 LSAGCVVDVDFHDRLLMATIGPIFAALLLVCTYAAAVRIHRGATETLENVRHKHVFMVLLLTFFVYSSVSATLFRTFACETLEDGKTYLLADYRIECDSSKHKRFEVYAGFMVLLYTAGIPALYSFLLFRDRDVLKGREAAGQDLRSRATSTSDLWKPYKPSVFYYEVVECARRVLLAGVVVFIYPNSSAQIAITLIVAFTFVLISEGLAPYASRWDTWINRMGHVVVVASMYLALLLKVDVSKERSSSQGVFEAVLVVAHVVMVVVXVAETLVL 1588          
BLAST of mRNA_A-nodosum_M_contig1196.1.1 vs. uniprot
Match: D7G301_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G301_ECTSI)

HSP 1 Score: 306 bits (784), Expect = 1.060e-88
Identity = 150/270 (55.56%), Postives = 194/270 (71.85%), Query Frame = 2
Query:    2 LSASCVVNIDFHDRLLFATLWPLVVILVLGVTYKIAAHRNNRSQAAIQNVRKKHLSAVVLLTLFVYSNVSSILFQTFTCEHLEDGKYYLRADYRIECDSGKHEKIQVYATIMMIVYTLGIPAFYATLLIRNHDILAKDEASRNDCPRVLSTSSLWRPYKPTVFYFEVVECARRVLLVGVVVFFNPNTVSQIAVTLILAFTFVVITEILDPYTSTWDTWLSRTGHVVVFFSVYVALLLKVDVSSERRDSQRTFEMILLFFNGCMIAAVVIE 811
            LSA C+ +IDFHDRLL +T+ P++ +L L  TY  A   N     ++Q +  KH+S V+LLT  +YS+VS+ LF+ F CE LEDG  YLRADY I+CDS KH+  QVYA  M++VY +GIPA YA LL R+  +L    A R    R  STS LW+PYKP+VFY+EV+EC RRVLL GVVVF  PNT +QIA+TL++AF FV+++E L P+ S WD WL+RTGH VVF S+Y+ALLLKVDVS ER  SQR +E++L+  + CMI AV+ E
Sbjct:  959 LSAGCIFDIDFHDRLLASTVSPVIGLLFLAGTYAAAVSMNRGKAESLQVIWNKHVSLVLLLTFLIYSSVSATLFKAFVCEELEDGTNYLRADYTIDCDSSKHKAFQVYAGFMVVVYVVGIPALYAFLLFRDRHVLKDHHADREQTARTTSTSDLWKPYKPSVFYYEVIECGRRVLLAGVVVFIFPNTAAQIAITLMMAFAFVMVSEGLAPFASKWDAWLNRTGHTVVFVSMYIALLLKVDVSGERAGSQRVYEIVLVAAHACMILAVMTE 1228          
BLAST of mRNA_A-nodosum_M_contig1196.1.1 vs. uniprot
Match: A0A6H5K7Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z1_9PHAE)

HSP 1 Score: 307 bits (787), Expect = 1.350e-88
Identity = 149/270 (55.19%), Postives = 198/270 (73.33%), Query Frame = 2
Query:    2 LSASCVVNIDFHDRLLFATLWPLVVILVLGVTYKIAAHRNNRSQAAIQNVRKKHLSAVVLLTLFVYSNVSSILFQTFTCEHLEDGKYYLRADYRIECDSGKHEKIQVYATIMMIVYTLGIPAFYATLLIRNHDILAKDEASRNDCPRVLSTSSLWRPYKPTVFYFEVVECARRVLLVGVVVFFNPNTVSQIAVTLILAFTFVVITEILDPYTSTWDTWLSRTGHVVVFFSVYVALLLKVDVSSERRDSQRTFEMILLFFNGCMIAAVVIE 811
            LS  CV+++DFH RLL AT+ P+  +L+L  TY  A   N  +   ++ +  KH+   +LLT  VYS+VSS LF+TF C+ LEDG Y LR DYRIECDS KH+  QVYA  M+++Y LGIP  Y+ LL R+ ++L KD+A RND  RV STS LW+PYKP+VFY+EV+EC RRVLL G++VF  PNT +Q+A+TL++AF F +++E + PY+S W+TW++R GHVVV  SVYVALLLKVDVS ER DSQ  FE +L+  + CMI +VV+E
Sbjct: 1190 LSVGCVLDMDFHGRLLAATIGPIFAVLLLAGTYAAATRINREANEKLRIIWDKHVFVFLLLTFLVYSSVSSTLFKTFACDELEDGNY-LRTDYRIECDSSKHKVFQVYAGFMILLYPLGIPVLYSILLFRDREVLKKDKADRNDSARVKSTSELWQPYKPSVFYYEVIECGRRVLLTGIIVFIYPNTAAQLAITLMMAFFFALLSEAVSPYSSRWETWVNRMGHVVVAVSVYVALLLKVDVSDERADSQSVFEAVLVTVHACMILSVVVE 1458          
BLAST of mRNA_A-nodosum_M_contig1196.1.1 vs. uniprot
Match: D7G2X5_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X5_ECTSI)

HSP 1 Score: 307 bits (786), Expect = 1.430e-88
Identity = 146/270 (54.07%), Postives = 199/270 (73.70%), Query Frame = 2
Query:    2 LSASCVVNIDFHDRLLFATLWPLVVILVLGVTYKIAAHRNNRSQAAIQNVRKKHLSAVVLLTLFVYSNVSSILFQTFTCEHLEDGKYYLRADYRIECDSGKHEKIQVYATIMMIVYTLGIPAFYATLLIRNHDILAKDEASRNDCPRVLSTSSLWRPYKPTVFYFEVVECARRVLLVGVVVFFNPNTVSQIAVTLILAFTFVVITEILDPYTSTWDTWLSRTGHVVVFFSVYVALLLKVDVSSERRDSQRTFEMILLFFNGCMIAAVVIE 811
            +SA CV+++ FH RLL AT+ P+  +L+L  TY  A   N  +   ++ +  KH+   +LLT  VYS+VSS LF+TF C+ LEDGK YLR DYRIECDS KH+  QVYA  M+++Y LGIP  Y+ LL ++ ++L KD+A R+D  RV STS LW+PYKP+VFY+EV+EC RR+LL G+VVF  PNT +Q+A+TL++AF F +++E + PY+S W+TW++R GHVVV  S+YVALLLKVDVS ER DSQ  FE +L+  + CMI +VV+E
Sbjct: 1130 MSAGCVLDMGFHGRLLAATIGPIFAVLLLAGTYAAATRINREANEKLRIIWDKHVFVFLLLTFLVYSSVSSTLFKTFACDELEDGKNYLRTDYRIECDSSKHKVFQVYAGFMILLYPLGIPMLYSILLFKDREVLKKDKADRDDSARVKSTSELWQPYKPSVFYYEVIECGRRILLTGIVVFIYPNTAAQLAITLMMAFFFALLSEAISPYSSRWETWVNRMGHVVVAVSMYVALLLKVDVSDERADSQSVFEAVLVTVHACMILSVVVE 1399          
BLAST of mRNA_A-nodosum_M_contig1196.1.1 vs. uniprot
Match: A0A6H5K0E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0E9_9PHAE)

HSP 1 Score: 306 bits (784), Expect = 3.740e-88
Identity = 151/271 (55.72%), Postives = 197/271 (72.69%), Query Frame = 2
Query:    2 LSASCVVNIDFHDRLLFATLWPLVVILVLGVTYKIAAHRNNRSQAAIQNVRKKHLSAVVLLTLFVYSNVSSILFQTFTCEHLEDGKYYLRADYRIECDSGKHEKIQVYATIMMIVYTLGIPAFYATLLIRNHDILAKDEASRNDCPRVLSTSSLWRPYKPTVFYFEVVECARRVLLVGVVVFFNPNTVSQIAVTLILAFTFVVITEILDPYTSTWDTWLSRTGHVVVFFSVYVALLLKVDVSSERRDSQRTFEMILLFFNGCMIAAVVIEA 814
            LSA CVV+++FH RLL +T+ P+V +L+L  TY  AA  N      +  +  KH++ V+LLT FVYS+VSS LF+ F C+ L+  K YLRADY IEC+S +H  IQVYA  M+++YT+GIPA YA LL ++ D+L  ++  R + PRV S S+LW PYKP VFY+EV+EC RRVLL GVVVF  PNT +QIAVTL++AF F +++E L PY S WDTW+SR GH+VVF S+YVALLLKVDVS ER  SQ  FE +L+  + CMI  V++EA
Sbjct: 1215 LSAGCVVDMNFHGRLLVSTISPIVALLLLACTYAAAARINRGEPEKLNIIWNKHVTVVLLLTFFVYSSVSSTLFRAFACDDLDYSKDYLRADYSIECNSSEHRGIQVYAGFMIVIYTVGIPALYAELLFKSRDVLKDEDPDREEPPRVKSISNLWEPYKPAVFYYEVIECFRRVLLAGVVVFIYPNTAAQIAVTLLIAFAFALLSEGLAPYASRWDTWISRVGHIVVFLSMYVALLLKVDVSDERASSQEVFESVLVAVHVCMILFVLVEA 1485          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1196.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5Y7_ECTSI2.200e-9759.06Polymorphic Outer membrane protein G/I family n=1 ... [more]
D7FHH1_ECTSI2.390e-9455.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G2Z8_ECTSI4.650e-9356.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHG7_ECTSI2.680e-9255.07LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LH65_ECTSI3.300e-9255.11Polymorphic outer membrane protein G/I family prot... [more]
D8LSC0_ECTSI4.270e-8957.82Polymorphic Outer membrane protein G/I family n=3 ... [more]
D7G301_ECTSI1.060e-8855.56Polymorphic Outer membrane protein G/I family n=1 ... [more]
A0A6H5K7Z1_9PHAE1.350e-8855.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2X5_ECTSI1.430e-8854.07Adhesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5K0E9_9PHAE3.740e-8855.72Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1196contigA-nodosum_M_contig1196:121361..122931 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G5Y7
PFAMsBeta_helix,Chlam_PMP
Model size1571
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.27e-60
EggNOG OGs2BFIX@1|root,2S176@2759|Eukaryota
Cds size546
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866613.477668-UTR-A-nodosum_M_contig1196:121360..1220511680866613.477668-UTR-A-nodosum_M_contig1196:121360..122051Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1196 121361..122051 -
1680866613.4950387-UTR-A-nodosum_M_contig1196:122597..1229311680866613.4950387-UTR-A-nodosum_M_contig1196:122597..122931Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1196 122598..122931 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866613.4869015-CDS-A-nodosum_M_contig1196:122051..1225971680866613.4869015-CDS-A-nodosum_M_contig1196:122051..122597Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1196 122052..122597 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1196.1.1prot_A-nodosum_M_contig1196.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1196 122052..122597 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1196.1.1

>prot_A-nodosum_M_contig1196.1.1 ID=prot_A-nodosum_M_contig1196.1.1|Name=mRNA_A-nodosum_M_contig1196.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=182bp
MMIVYTLGIPAFYATLLIRNHDILAKDEASRNDCPRVLSTSSLWRPYKPT
VFYFEVVECARRVLLVGVVVFFNPNTVSQIAVTLILAFTFVVITEILDPY
TSTWDTWLSRTGHVVVFFSVYVALLLKVDVSSERRDSQRTFEMILLFFNG
CMIAAVVIEALLMLCVRLGFCLVKVRCQYHS*
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mRNA from alignment at A-nodosum_M_contig1196:121361..122931-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1196.1.1 ID=mRNA_A-nodosum_M_contig1196.1.1|Name=mRNA_A-nodosum_M_contig1196.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1571bp|location=Sequence derived from alignment at A-nodosum_M_contig1196:121361..122931- (Ascophyllum nodosum dioecious)
GCTCTCTGCCTCGTGCGTGGTTAATATCGACTTCCACGACCGACTACTTT TTGCCACACTCTGGCCTTTGGTCGTCATTTTGGTGCTTGGAGTGACGTAC AAAATTGCGGCGCATAGGAACAATCGGTCTCAAGCGGCTATTCAAAATGT TCGAAAGAAGCACCTTTCCGCGGTGGTGCTGCTGACTTTATTCGTATACT CCAACGTCAGCTCTATCCTTTTCCAAACTTTCACATGCGAGCACCTCGAG GACGGGAAGTACTACCTTCGCGCCGACTACCGTATTGAATGCGACTCTGG AAAGCACGAAAAGATCCAAGTGTACGCTACGATAATGATGATTGTGTACA CATTGGGTATCCCGGCATTCTATGCCACGCTCTTAATCAGAAATCACGAT ATTCTTGCGAAAGACGAAGCCTCACGGAACGATTGCCCCCGTGTCCTTTC AACAAGTAGTCTGTGGCGGCCGTATAAACCGACAGTGTTCTACTTCGAAG TGGTCGAATGCGCCAGGCGCGTTCTTCTAGTGGGTGTAGTGGTGTTCTTC AACCCTAACACCGTGTCTCAGATCGCTGTGACGCTCATACTCGCCTTCAC CTTCGTGGTTATAACAGAGATTCTGGATCCGTACACGTCGACATGGGATA CCTGGCTCAGTCGAACTGGACACGTAGTGGTCTTCTTTTCCGTATACGTA GCTCTCCTTTTGAAGGTTGATGTATCCTCGGAGCGCCGCGACAGCCAAAG AACCTTCGAAATGATCCTACTATTTTTTAATGGTTGCATGATAGCGGCGG TCGTCATCGAGGCGTTACTGATGTTGTGTGTTCGTTTGGGTTTTTGCTTG GTAAAGGTTAGATGCCAGTATCATTCCTGACACACATCCTATACGTTCAA AGATATGGCGTGTGAACAGTACGGTATCCCCGGGGCAAAGGGTAGAGGTA ACTAGCCGGAGGGGGATTTGGGTGGTTTATAGAGCAGGAAGAATTGTCAA CGAAAGAATGAAGGCGGCAGTAAGGACAAACTCCAGTCGTCAGCAATTGT GTAGTGCGAAGCATATTGCTCCACGGGTGTATCGTGTGTCTACTCAATGT GTTATATAATTTATATTCTCGAAGGGCATACGCCCGGCTTCCTATACCAC TCATGATTTGAGCTGCCTTTCTGCGGTTCTATAATTTTGTCGTTTCTGTT CTATAGAGGGATTCCCTTGTCATGTCTCCTACATAGTAAAAAAAATGGCA ATTGGTCGTATCTCGATGACCAGACCGTGTATTGACACAATGTGTTCGAC ACACATGATGTGCAGAGTTTTAATGCATCCGGGTCAGGACCATCCGACAT GTCTCGTTCGTGGGCAAAAAAATAATGTTGTCGGTCTTGGGTAGGCAAAT GTCATTCGCTGGGGACCGAAGCGATCGAAGTAGTCATCTATATGTTATCT TGGCACTGTTGTCTCCGAGACCACGATTGAGTACGAATCAATAGGTCTTT CCCCGATTTGATGATGACTTATCCTCTCGCGTGTTTCGCTACTGGACGAT GCGGTAATAACCCAATGTATG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1196:121361..122931-

>mRNA_A-nodosum_M_contig1196.1.1 ID=mRNA_A-nodosum_M_contig1196.1.1|Name=mRNA_A-nodosum_M_contig1196.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at A-nodosum_M_contig1196:121361..122931- (Ascophyllum nodosum dioecious)
ATGATGATTGTGTACACATTGGGTATCCCGGCATTCTATGCCACGCTCTT
AATCAGAAATCACGATATTCTTGCGAAAGACGAAGCCTCACGGAACGATT
GCCCCCGTGTCCTTTCAACAAGTAGTCTGTGGCGGCCGTATAAACCGACA
GTGTTCTACTTCGAAGTGGTCGAATGCGCCAGGCGCGTTCTTCTAGTGGG
TGTAGTGGTGTTCTTCAACCCTAACACCGTGTCTCAGATCGCTGTGACGC
TCATACTCGCCTTCACCTTCGTGGTTATAACAGAGATTCTGGATCCGTAC
ACGTCGACATGGGATACCTGGCTCAGTCGAACTGGACACGTAGTGGTCTT
CTTTTCCGTATACGTAGCTCTCCTTTTGAAGGTTGATGTATCCTCGGAGC
GCCGCGACAGCCAAAGAACCTTCGAAATGATCCTACTATTTTTTAATGGT
TGCATGATAGCGGCGGTCGTCATCGAGGCGTTACTGATGTTGTGTGTTCG
TTTGGGTTTTTGCTTGGTAAAGGTTAGATGCCAGTATCATTCCTGA
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