mRNA_A-nodosum_M_contig1196.1.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1196.1.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI) HSP 1 Score: 333 bits (855), Expect = 2.200e-97 Identity = 163/276 (59.06%), Postives = 209/276 (75.72%), Query Frame = 2
Query: 2 LSASCVVNIDFHDRLLFATLWPLVVILVLGVTYKIAAHRNNRSQAAIQNVRKKHLSAVVLLTLFVYSNVSSILFQTFTCEHLEDGKYYLRADYRIECDSGKHEKIQVYATIMMIVYTLGIPAFYATLLIRNHDILAKDEASRNDCPRVLSTSSLWRPYKPTVFYFEVVECARRVLLVGVVVFFNPNTVSQIAVTLILAFTFVVITEILDPYTSTWDTWLSRTGHVVVFFSVYVALLLKVDVSSERRDSQRTFEMILLFFNGCMIAAVVIEALLMLC 829
LSA C+V +DFHDRLL +T+ P+V +L L TY A N + +Q + +H+S V+LLT+FVYS+VSS LFQTF CE L DG+ YLRADYRI CDS KH+ +QVYA +M++VYT+GIPA Y LL R+ D+L + A R + RV+STS LW+PYKP+VFY+EV+EC RRVLL GVVVF PNT QIA+TL++AF FVV++E L PY S WDTWLSR GH VVF S+YVALLLKVDVS+ER +SQR FE++L+ + CMI +VIE +++ C
Sbjct: 1770 LSAGCIVVVDFHDRLLISTIGPIVALLFLCWTYAAATRINRGATETLQVIWNRHVSMVLLLTVFVYSSVSSTLFQTFACESLADGETYLRADYRITCDSSKHKALQVYAGVMVVVYTVGIPALYGVLLFRDRDVLKRSGADREETARVISTSELWKPYKPSVFYYEVIECGRRVLLAGVVVFIYPNTAPQIAITLLMAFAFVVVSEGLAPYASRWDTWLSRMGHAVVFVSMYVALLLKVDVSNERVESQRVFEVVLVAAHACMILVIVIETVVLTC 2045
BLAST of mRNA_A-nodosum_M_contig1196.1.1 vs. uniprot
Match: D7FHH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH1_ECTSI) HSP 1 Score: 318 bits (816), Expect = 2.390e-94 Identity = 152/276 (55.07%), Postives = 203/276 (73.55%), Query Frame = 2
Query: 2 LSASCVVNIDFHDRLLFATLWPLVVILVLGVTYKIAAHRNNRSQAAIQNVRKKHLSAVVLLTLFVYSNVSSILFQTFTCEHLEDGKYYLRADYRIECDSGKHEKIQVYATIMMIVYTLGIPAFYATLLIRNHDILAKDEASRNDCPRVLSTSSLWRPYKPTVFYFEVVECARRVLLVGVVVFFNPNTVSQIAVTLILAFTFVVITEILDPYTSTWDTWLSRTGHVVVFFSVYVALLLKVDVSSERRDSQRTFEMILLFFNGCMIAAVVIEALLMLC 829
LSA CV+++DFHDRLL +T+ P++ +L L TY+ + N + A +Q V +H+S V+LL VYS VSS++FQTF C+ LE G YLRADYRIECDS KH+ +VYA M+++Y +GIPAFY LL+R+ D+L KD R D PRV S S+LW+PY+P+V+Y+EV+EC RR+LL G+VVF PNT +QIA+TLI+ F V++E L PY WDTW+SR H VVF SVYVALLLKVDVS+E+ SQ+ FE +L+ + CMI AVV+E +L+ C
Sbjct: 720 LSAGCVMDLDFHDRLLLSTIGPIMALLFLAATYRAGSRINRGNAATLQLVWDRHVSMVLLLVFLVYSGVSSVVFQTFACDQLEGGGEYLRADYRIECDSSKHQGFRVYAGFMILLYPVGIPAFYGALLLRDRDVLEKDPDGREDPPRVASISNLWQPYRPSVYYYEVIECGRRILLTGLVVFIYPNTAAQIAITLIMTVVFAVLSEALRPYAQAWDTWVSRVSHAVVFMSVYVALLLKVDVSNEKGSSQKVFEAVLVAAHACMILAVVVETILLGC 995
BLAST of mRNA_A-nodosum_M_contig1196.1.1 vs. uniprot
Match: D7G2Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Z8_ECTSI) HSP 1 Score: 315 bits (807), Expect = 4.650e-93 Identity = 154/273 (56.41%), Postives = 198/273 (72.53%), Query Frame = 2
Query: 2 LSASCVVNIDFHDRLLFATLWPLVVILVLGVTYKIAAHRNNRSQAAIQNVRKKHLSAVVLLTLFVYSNVSSILFQTFTCEHLEDGKYYLRADYRIECDSGKHEKIQVYATIMMIVYTLGIPAFYATLLIRNHDILAKDEASRNDCPRVLSTSSLWRPYKPTVFYFEVVECARRVLLVGVVVFFNPNTVSQIAVTLILAFTFVVITEILDPYTSTWDTWLSRTGHVVVFFSVYVALLLKVDVSSERRDSQRTFEMILLFFNGCMIAAVVIEALL 820
LSA CV ++DFHDRLL +T+ P+V +L L Y AA ++RS +Q V KH+S V+LLT VY++VS++LFQTF CE L+D K YLRADYRIECDS KH QVYA M+++YT+GIPA Y L R+ D+L +DEA R R+ T+ LW+PY+P+VFY+EV+ECARRVLL GVVVF PNT +QIAV L++A F +I+E L PY S WDTWL R GH VV S+YVALLLKVDVS ER SQR FE +L+ + CM+ V++E ++
Sbjct: 680 LSAGCVFDVDFHDRLLVSTIAPIVGLLFLAAVYAAAARNSHRSSEDLQRVWHKHVSLVLLLTFLVYASVSAVLFQTFACEELDDRKNYLRADYRIECDSPKHSAFQVYAGFMIVLYTVGIPALYGGFLFRDSDVLRRDEADREQLARIAPTADLWKPYRPSVFYYEVIECARRVLLAGVVVFIYPNTAAQIAVALLIAVVFAMISEALAPYASRWDTWLCRMGHAVVAVSMYVALLLKVDVSDERASSQRVFESLLVAAHVCMVGVVLLEVIM 952
BLAST of mRNA_A-nodosum_M_contig1196.1.1 vs. uniprot
Match: D7FHG7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG7_ECTSI) HSP 1 Score: 319 bits (817), Expect = 2.680e-92 Identity = 152/276 (55.07%), Postives = 203/276 (73.55%), Query Frame = 2
Query: 2 LSASCVVNIDFHDRLLFATLWPLVVILVLGVTYKIAAHRNNRSQAAIQNVRKKHLSAVVLLTLFVYSNVSSILFQTFTCEHLEDGKYYLRADYRIECDSGKHEKIQVYATIMMIVYTLGIPAFYATLLIRNHDILAKDEASRNDCPRVLSTSSLWRPYKPTVFYFEVVECARRVLLVGVVVFFNPNTVSQIAVTLILAFTFVVITEILDPYTSTWDTWLSRTGHVVVFFSVYVALLLKVDVSSERRDSQRTFEMILLFFNGCMIAAVVIEALLMLC 829
+SA CV+N+DFHDRLL +T+ P++ +L L TY+ + N + A +Q V +H+S V+LL VYS+VSS++FQTF C+ LE G YLRADYRIECDS KH+ +VYA M+++Y +GIPAFY LL R+ D+L KD R D PRV S S+LW+PY+P+V+Y+EV+EC RR+LL G+VVF PNT +QIA+TLI+ F V++E L PY WDTW+SR H VVF SVYVALLLKVDVS+E+ SQ+ FE +L+ + CMI AVV+E +L+ C
Sbjct: 2458 ISAGCVMNLDFHDRLLLSTIGPIMALLCLAATYRAGSRINRGNAATLQLVWDRHVSMVLLLVFVVYSSVSSVVFQTFACDQLEGGGEYLRADYRIECDSSKHQGFRVYAGFMILLYPVGIPAFYGALLFRDRDVLEKDPDGREDPPRVASISNLWQPYRPSVYYYEVIECGRRILLTGLVVFIYPNTAAQIAITLIMTVVFAVLSEALRPYAQAWDTWVSRVSHAVVFMSVYVALLLKVDVSNEKGSSQKVFEAVLVAAHACMILAVVVETILLGC 2733
BLAST of mRNA_A-nodosum_M_contig1196.1.1 vs. uniprot
Match: D8LH65_ECTSI (Polymorphic outer membrane protein G/I family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH65_ECTSI) HSP 1 Score: 305 bits (780), Expect = 3.300e-92 Identity = 151/274 (55.11%), Postives = 202/274 (73.72%), Query Frame = 2
Query: 2 LSASCVVNIDFHDRLLFATLWPLVVILVLGVTYKIAAHRNNRSQAAIQNVRKKHLSAVVLLTLFVYSNVSSILFQTFTCEHLEDGKYYLRADYRIECDSGKHEKIQVYATIMMIVYTLGIPAFYATLLIRNHDILAKDEASRNDCPRVLSTSSLWRPYKPTVFYFEVVECARRVLLVGVVVFFNPNTVSQIAVTLILAFTFVVITEILDPYTSTWDTWLSRTGHVVVFFSVYVALLLKVDVSSERRDSQRTFEMILLFFNGCMIAAVVIEALLM 823
LS CVV DFHDRLL +T+ P+V +++L TY A + S +Q+V KH+S V+LLT FVYSNVS+ILF+ F CE L + YLR+DYRIECDS KH+ ++ A M+++YT+GIP YA L+ R+ +L KDEA R D PRV STS LW+PY+P+VFY+EV EC RVLL GVVVF P+T +QIAVTL++AF FV+++E+L PY+S WD W++R GHVVVF S++VALLLKVDV+ E SQ+ FE +L+ + CM+ VVIEA+++
Sbjct: 402 LSVGCVVRTDFHDRLLVSTIGPIVGLMLLTCTYACALQIHQGSSQNLQSVWNKHVSMVLLLTFFVYSNVSAILFKAFACEQLGES-IYLRSDYRIECDSPKHQAFKINAGFMIVLYTVGIPTLYAGLVFRDRHLLKKDEADREDTPRVTSTSGLWKPYRPSVFYYEVFECGWRVLLAGVVVFIYPDTAAQIAVTLMIAFAFVIVSEVLSPYSSKWDRWVNRMGHVVVFVSMFVALLLKVDVADEDASSQKVFESVLVAAHVCMVLVVVIEAIVL 674
BLAST of mRNA_A-nodosum_M_contig1196.1.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI) HSP 1 Score: 309 bits (792), Expect = 4.270e-89 Identity = 159/275 (57.82%), Postives = 202/275 (73.45%), Query Frame = 2
Query: 2 LSASCVVNIDFHDRLLFATLWPLVVILVLGVTYKIAAHRNNRSQAAIQNVRKKHLSAVVLLTLFVYSNVSSILFQTFTCEHLEDGKYYLRADYRIECDSGKHEKIQVYATIMMIVYTLGIPAFYATLLIRNHDILAKDEASRNDC-PRVLSTSSLWRPYKPTVFYFEVVECARRVLLVGVVVFFNPNTVSQIAVTLILAFTFVVITEILDPYTSTWDTWLSRTGHVVVFFSVYVALLLKVDVSSERRDSQRTFEMILLFFNGCMIAAVVIEALLM 823
LSA CVV++DFHDRLL AT+ P+ L+L TY A + + ++NVR KH+ V+LLT FVYS+VS+ LF+TF CE LEDGK YL ADYRIECDS KH++ +VYA M+++YT GIPA Y+ LL R+ D+L EA+ D R STS LW+PYKP+VFY+EVVECARRVLL GVVVF PN+ +QIA+TLI+AFTFV+I+E L PY S WDTW++R GHVVV S+Y+ALLLKVDVS ER SQ FE +L+ + M+ V E L++
Sbjct: 1314 LSAGCVVDVDFHDRLLMATIGPIFAALLLVCTYAAAVRIHRGATETLENVRHKHVFMVLLLTFFVYSSVSATLFRTFACETLEDGKTYLLADYRIECDSSKHKRFEVYAGFMVLLYTAGIPALYSFLLFRDRDVLKGREAAGQDLRSRATSTSDLWKPYKPSVFYYEVVECARRVLLAGVVVFIYPNSSAQIAITLIVAFTFVLISEGLAPYASRWDTWINRMGHVVVVASMYLALLLKVDVSKERSSSQGVFEAVLVVAHVVMVVVXVAETLVL 1588
BLAST of mRNA_A-nodosum_M_contig1196.1.1 vs. uniprot
Match: D7G301_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G301_ECTSI) HSP 1 Score: 306 bits (784), Expect = 1.060e-88 Identity = 150/270 (55.56%), Postives = 194/270 (71.85%), Query Frame = 2
Query: 2 LSASCVVNIDFHDRLLFATLWPLVVILVLGVTYKIAAHRNNRSQAAIQNVRKKHLSAVVLLTLFVYSNVSSILFQTFTCEHLEDGKYYLRADYRIECDSGKHEKIQVYATIMMIVYTLGIPAFYATLLIRNHDILAKDEASRNDCPRVLSTSSLWRPYKPTVFYFEVVECARRVLLVGVVVFFNPNTVSQIAVTLILAFTFVVITEILDPYTSTWDTWLSRTGHVVVFFSVYVALLLKVDVSSERRDSQRTFEMILLFFNGCMIAAVVIE 811
LSA C+ +IDFHDRLL +T+ P++ +L L TY A N ++Q + KH+S V+LLT +YS+VS+ LF+ F CE LEDG YLRADY I+CDS KH+ QVYA M++VY +GIPA YA LL R+ +L A R R STS LW+PYKP+VFY+EV+EC RRVLL GVVVF PNT +QIA+TL++AF FV+++E L P+ S WD WL+RTGH VVF S+Y+ALLLKVDVS ER SQR +E++L+ + CMI AV+ E
Sbjct: 959 LSAGCIFDIDFHDRLLASTVSPVIGLLFLAGTYAAAVSMNRGKAESLQVIWNKHVSLVLLLTFLIYSSVSATLFKAFVCEELEDGTNYLRADYTIDCDSSKHKAFQVYAGFMVVVYVVGIPALYAFLLFRDRHVLKDHHADREQTARTTSTSDLWKPYKPSVFYYEVIECGRRVLLAGVVVFIFPNTAAQIAITLMMAFAFVMVSEGLAPFASKWDAWLNRTGHTVVFVSMYIALLLKVDVSGERAGSQRVYEIVLVAAHACMILAVMTE 1228
BLAST of mRNA_A-nodosum_M_contig1196.1.1 vs. uniprot
Match: A0A6H5K7Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z1_9PHAE) HSP 1 Score: 307 bits (787), Expect = 1.350e-88 Identity = 149/270 (55.19%), Postives = 198/270 (73.33%), Query Frame = 2
Query: 2 LSASCVVNIDFHDRLLFATLWPLVVILVLGVTYKIAAHRNNRSQAAIQNVRKKHLSAVVLLTLFVYSNVSSILFQTFTCEHLEDGKYYLRADYRIECDSGKHEKIQVYATIMMIVYTLGIPAFYATLLIRNHDILAKDEASRNDCPRVLSTSSLWRPYKPTVFYFEVVECARRVLLVGVVVFFNPNTVSQIAVTLILAFTFVVITEILDPYTSTWDTWLSRTGHVVVFFSVYVALLLKVDVSSERRDSQRTFEMILLFFNGCMIAAVVIE 811
LS CV+++DFH RLL AT+ P+ +L+L TY A N + ++ + KH+ +LLT VYS+VSS LF+TF C+ LEDG Y LR DYRIECDS KH+ QVYA M+++Y LGIP Y+ LL R+ ++L KD+A RND RV STS LW+PYKP+VFY+EV+EC RRVLL G++VF PNT +Q+A+TL++AF F +++E + PY+S W+TW++R GHVVV SVYVALLLKVDVS ER DSQ FE +L+ + CMI +VV+E
Sbjct: 1190 LSVGCVLDMDFHGRLLAATIGPIFAVLLLAGTYAAATRINREANEKLRIIWDKHVFVFLLLTFLVYSSVSSTLFKTFACDELEDGNY-LRTDYRIECDSSKHKVFQVYAGFMILLYPLGIPVLYSILLFRDREVLKKDKADRNDSARVKSTSELWQPYKPSVFYYEVIECGRRVLLTGIIVFIYPNTAAQLAITLMMAFFFALLSEAVSPYSSRWETWVNRMGHVVVAVSVYVALLLKVDVSDERADSQSVFEAVLVTVHACMILSVVVE 1458
BLAST of mRNA_A-nodosum_M_contig1196.1.1 vs. uniprot
Match: D7G2X5_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X5_ECTSI) HSP 1 Score: 307 bits (786), Expect = 1.430e-88 Identity = 146/270 (54.07%), Postives = 199/270 (73.70%), Query Frame = 2
Query: 2 LSASCVVNIDFHDRLLFATLWPLVVILVLGVTYKIAAHRNNRSQAAIQNVRKKHLSAVVLLTLFVYSNVSSILFQTFTCEHLEDGKYYLRADYRIECDSGKHEKIQVYATIMMIVYTLGIPAFYATLLIRNHDILAKDEASRNDCPRVLSTSSLWRPYKPTVFYFEVVECARRVLLVGVVVFFNPNTVSQIAVTLILAFTFVVITEILDPYTSTWDTWLSRTGHVVVFFSVYVALLLKVDVSSERRDSQRTFEMILLFFNGCMIAAVVIE 811
+SA CV+++ FH RLL AT+ P+ +L+L TY A N + ++ + KH+ +LLT VYS+VSS LF+TF C+ LEDGK YLR DYRIECDS KH+ QVYA M+++Y LGIP Y+ LL ++ ++L KD+A R+D RV STS LW+PYKP+VFY+EV+EC RR+LL G+VVF PNT +Q+A+TL++AF F +++E + PY+S W+TW++R GHVVV S+YVALLLKVDVS ER DSQ FE +L+ + CMI +VV+E
Sbjct: 1130 MSAGCVLDMGFHGRLLAATIGPIFAVLLLAGTYAAATRINREANEKLRIIWDKHVFVFLLLTFLVYSSVSSTLFKTFACDELEDGKNYLRTDYRIECDSSKHKVFQVYAGFMILLYPLGIPMLYSILLFKDREVLKKDKADRDDSARVKSTSELWQPYKPSVFYYEVIECGRRILLTGIVVFIYPNTAAQLAITLMMAFFFALLSEAISPYSSRWETWVNRMGHVVVAVSMYVALLLKVDVSDERADSQSVFEAVLVTVHACMILSVVVE 1399
BLAST of mRNA_A-nodosum_M_contig1196.1.1 vs. uniprot
Match: A0A6H5K0E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0E9_9PHAE) HSP 1 Score: 306 bits (784), Expect = 3.740e-88 Identity = 151/271 (55.72%), Postives = 197/271 (72.69%), Query Frame = 2
Query: 2 LSASCVVNIDFHDRLLFATLWPLVVILVLGVTYKIAAHRNNRSQAAIQNVRKKHLSAVVLLTLFVYSNVSSILFQTFTCEHLEDGKYYLRADYRIECDSGKHEKIQVYATIMMIVYTLGIPAFYATLLIRNHDILAKDEASRNDCPRVLSTSSLWRPYKPTVFYFEVVECARRVLLVGVVVFFNPNTVSQIAVTLILAFTFVVITEILDPYTSTWDTWLSRTGHVVVFFSVYVALLLKVDVSSERRDSQRTFEMILLFFNGCMIAAVVIEA 814
LSA CVV+++FH RLL +T+ P+V +L+L TY AA N + + KH++ V+LLT FVYS+VSS LF+ F C+ L+ K YLRADY IEC+S +H IQVYA M+++YT+GIPA YA LL ++ D+L ++ R + PRV S S+LW PYKP VFY+EV+EC RRVLL GVVVF PNT +QIAVTL++AF F +++E L PY S WDTW+SR GH+VVF S+YVALLLKVDVS ER SQ FE +L+ + CMI V++EA
Sbjct: 1215 LSAGCVVDMNFHGRLLVSTISPIVALLLLACTYAAAARINRGEPEKLNIIWNKHVTVVLLLTFFVYSSVSSTLFRAFACDDLDYSKDYLRADYSIECNSSEHRGIQVYAGFMIVIYTVGIPALYAELLFKSRDVLKDEDPDREEPPRVKSISNLWEPYKPAVFYYEVIECFRRVLLAGVVVFIYPNTAAQIAVTLLIAFAFALLSEGLAPYASRWDTWISRVGHIVVFLSMYVALLLKVDVSDERASSQEVFESVLVAVHVCMILFVLVEA 1485 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1196.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1196.1.1 >prot_A-nodosum_M_contig1196.1.1 ID=prot_A-nodosum_M_contig1196.1.1|Name=mRNA_A-nodosum_M_contig1196.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=182bp MMIVYTLGIPAFYATLLIRNHDILAKDEASRNDCPRVLSTSSLWRPYKPTback to top mRNA from alignment at A-nodosum_M_contig1196:121361..122931- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1196.1.1 ID=mRNA_A-nodosum_M_contig1196.1.1|Name=mRNA_A-nodosum_M_contig1196.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1571bp|location=Sequence derived from alignment at A-nodosum_M_contig1196:121361..122931- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1196:121361..122931- >mRNA_A-nodosum_M_contig1196.1.1 ID=mRNA_A-nodosum_M_contig1196.1.1|Name=mRNA_A-nodosum_M_contig1196.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at A-nodosum_M_contig1196:121361..122931- (Ascophyllum nodosum dioecious)back to top |