mRNA_A-nodosum_M_contig1194.23.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1194.23.1
Unique NamemRNA_A-nodosum_M_contig1194.23.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1194.23.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1194contigA-nodosum_M_contig1194:244433..244929 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size499
Hectar predicted targeting categoryother localisation
Exons1
Cds size384
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866610.4730046-CDS-A-nodosum_M_contig1194:244432..2448161680866610.4730046-CDS-A-nodosum_M_contig1194:244432..244816Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1194 244433..244816 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866610.4848282-UTR-A-nodosum_M_contig1194:244816..2449291680866610.4848282-UTR-A-nodosum_M_contig1194:244816..244929Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1194 244817..244929 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1194.23.1prot_A-nodosum_M_contig1194.23.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1194 244433..244816 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1194.23.1

>prot_A-nodosum_M_contig1194.23.1 ID=prot_A-nodosum_M_contig1194.23.1|Name=mRNA_A-nodosum_M_contig1194.23.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=128bp
AAVVTRSEELETPPKSPAISTGLDKPGISPAFEADSPQTEESFFPFEAST
EDLLDKYFTSTKQVEPALLHQQHVGVDDNEKETTQQAAVREESARTTIRQ
LRTTASSTQQSNQFDRGRLMRCKIPFS*
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mRNA from alignment at A-nodosum_M_contig1194:244433..244929+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1194.23.1 ID=mRNA_A-nodosum_M_contig1194.23.1|Name=mRNA_A-nodosum_M_contig1194.23.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=497bp|location=Sequence derived from alignment at A-nodosum_M_contig1194:244433..244929+ (Ascophyllum nodosum dioecious)
GCCGCGGTCGTTACGAGGTCAGAGGAACTCGAAACGCCGCCAAAGTCGCC
CGCGATCAGTACGGGACTCGATAAACCCGGAATATCGCCGGCTTTTGAAG
CCGATTCACCACAGACGGAGGAGAGCTTTTTCCCTTTTGAAGCCAGTACG
GAGGATCTTTTGGATAAGTATTTCACAAGCACGAAGCAGGTGGAGCCTGC
GTTACTTCATCAACAACACGTCGGGGTAGACGACAATGAAAAAGAAACTA
CTCAACAAGCAGCTGTTCGCGAGGAGTCTGCGAGGACTACAATTCGCCAG
CTACGGACGACCGCGTCGTCAACCCAACAGAGCAACCAGTTCGACAGGGG
AAGACTTATGAGATGCAAAATTcCTTTCTCCTGAGAGAGATATTTTGCCT
GTACTACTGTACTGTTGTCTATCTTTGTTTGTTTCTTTCCGTTTGCATTT
GTTTTGTCTACTCTGCCCGTATTTCGTATTTTTCCGCTTTGCCACCG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1194:244433..244929+

>mRNA_A-nodosum_M_contig1194.23.1 ID=mRNA_A-nodosum_M_contig1194.23.1|Name=mRNA_A-nodosum_M_contig1194.23.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at A-nodosum_M_contig1194:244433..244929+ (Ascophyllum nodosum dioecious)
GCCGCGGTCGTTACGAGGTCAGAGGAACTCGAAACGCCGCCAAAGTCGCC
CGCGATCAGTACGGGACTCGATAAACCCGGAATATCGCCGGCTTTTGAAG
CCGATTCACCACAGACGGAGGAGAGCTTTTTCCCTTTTGAAGCCAGTACG
GAGGATCTTTTGGATAAGTATTTCACAAGCACGAAGCAGGTGGAGCCTGC
GTTACTTCATCAACAACACGTCGGGGTAGACGACAATGAAAAAGAAACTA
CTCAACAAGCAGCTGTTCGCGAGGAGTCTGCGAGGACTACAATTCGCCAG
CTACGGACGACCGCGTCGTCAACCCAACAGAGCAACCAGTTCGACAGGGG
AAGACTTATGAGATGCAAAATTcCTTTCTCCTGA
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