mRNA_A-nodosum_M_contig1194.21.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1194.21.1
Unique NamemRNA_A-nodosum_M_contig1194.21.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1194.21.1 vs. uniprot
Match: D8LLR6_ECTSI (Kinesin-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLR6_ECTSI)

HSP 1 Score: 243 bits (620), Expect = 3.280e-72
Identity = 128/168 (76.19%), Postives = 139/168 (82.74%), Query Frame = 1
Query:    1 FEFDRVFKQDSSQGSVFEAVSPLVTSVLDGYNVYIFAYGQTDSGKTSTMEGPNANPGVNIRALTNMFRISRDRSDDVSYTFHISMMEIYNEPIFYLLRAD------GSSKTSLEIRQRAGGGTGVPGLTEVPVASMQEVSAQLERGGKYRAVGARDMNECSSRSHMIF 486
            FEFDRVFK DSSQ  VFEAVSPLVTSVLDGYNV IFAYGQT SGKT TMEGP +NPGVN RALT+MFRI+  RSDDV+YTFH+SMMEIYNE ++ LL+ +      GS+KTSL+IRQ A GGT VPGLTEV VA M EV AQLERGGK RAVGA DMNE SSRSHMIF
Sbjct:  595 FEFDRVFKPDSSQEGVFEAVSPLVTSVLDGYNVCIFAYGQTGSGKTFTMEGPTSNPGVNTRALTDMFRIAEARSDDVTYTFHMSMMEIYNEAVYDLLKTEVKDKSPGSTKTSLDIRQNASGGTSVPGLTEVVVAGMPEVIAQLERGGKNRAVGAHDMNEHSSRSHMIF 762          
BLAST of mRNA_A-nodosum_M_contig1194.21.1 vs. uniprot
Match: A0A835ZG01_9STRA (Kinesin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG01_9STRA)

HSP 1 Score: 177 bits (449), Expect = 6.300e-52
Identity = 97/165 (58.79%), Postives = 118/165 (71.52%), Query Frame = 1
Query:    1 FEFDRVFKQDSSQGSVFEAVSPLVTSVLDGYNVYIFAYGQTDSGKTSTMEGPNANPGVNIRALTNMFRISRDRSDDVSYTFHISMMEIYNEPIFYLLRADGSSK----TSLEIRQRAGGGTGVPGLTEVPVASMQEVSAQLERGGKYRAVGARDMNECSSRSHMI 483
            FEFDRVF   S+Q  VFE V PL+ SVLDG++V IFAYGQT SGKT TMEG  ANPGVN RA+  +F + R RS+D++YTF +S++EIYNE I+ LL    ++K      L+IRQ A G   VPGL  V V SM+ V+AQLE+  K RAVG+ DMNE SSRSHMI
Sbjct:   50 FEFDRVFPPSSTQEQVFEGVHPLIVSVLDGFDVAIFAYGQTGSGKTFTMEGDAANPGVNTRAMQTLFELGRQRSNDINYTFTLSVLEIYNESIYDLLSDSATTKGERGRGLDIRQGAAGII-VPGLAAVEVDSMEMVTAQLEQANKARAVGSHDMNEHSSRSHMI 213          
BLAST of mRNA_A-nodosum_M_contig1194.21.1 vs. uniprot
Match: A0A118K6S4_CYNCS (Kinesin-like protein n=1 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=A0A118K6S4_CYNCS)

HSP 1 Score: 166 bits (419), Expect = 1.700e-46
Identity = 88/161 (54.66%), Postives = 111/161 (68.94%), Query Frame = 1
Query:    1 FEFDRVFKQDSSQGSVFEAVSPLVTSVLDGYNVYIFAYGQTDSGKTSTMEGPNANPGVNIRALTNMFRISRDRSDDVSYTFHISMMEIYNEPIFYLLRADGSSKTSLEIRQRAGGGTGVPGLTEVPVASMQEVSAQLERGGKYRAVGARDMNECSSRSHMI 483
            F+FD +FK + +Q +VF   SPLV S LDG+NV IFAYGQT +GKT TMEG N N GVN RAL  +FR+S +RSD + Y   +SM+E+YNE I  LL  DG+ K  LEI+Q A G   VPGL+EVPV    EV   L+RG + R+VG+ + NE SSRSH +
Sbjct:  191 FKFDHIFKPEDNQEAVFAQTSPLVVSALDGFNVCIFAYGQTGTGKTFTMEGTNENRGVNYRALEELFRVSEERSDIMKYELFVSMLEVYNEKIRDLLVEDGNIK-KLEIKQSAEGTQEVPGLSEVPVYKTDEVWELLKRGSRVRSVGSTNANELSSRSHCL 350          
BLAST of mRNA_A-nodosum_M_contig1194.21.1 vs. uniprot
Match: W7U268_9STRA (Kinesin-like protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U268_9STRA)

HSP 1 Score: 171 bits (432), Expect = 2.930e-46
Identity = 94/165 (56.97%), Postives = 111/165 (67.27%), Query Frame = 1
Query:    1 FEFDRVFKQDSSQGSVFEAVSPLVTSVLDGYNVYIFAYGQTDSGKTSTMEGPNANPGVNIRALTNMFRISRDRSDDVSYTFHISMMEIYNEPIFYLLRADG----SSKTSLEIRQRAGGGTGVPGLTEVPVASMQEVSAQLERGGKYRAVGARDMNECSSRSHMI 483
            FEFDRVF   SSQ  VFEAV+P+VTSV+DGY+  IFAYGQT SGKT TMEGP+ + GVN RAL  MFR+ +DR  D+ YT  +SM+E+YNE I  LL A G    +    LE+R    G   VPGLT V V S+ EV   +  G + RAVGA DMNE SSRSH I
Sbjct:  548 FEFDRVFAPGSSQAEVFEAVAPIVTSVMDGYSACIFAYGQTGSGKTHTMEGPSEDRGVNFRALEEMFRLRQDRQADMCYTLSLSMLEVYNETIRDLLAAKGKGGGAEMAKLEVRMSDNGSYDVPGLTLVEVHSLDEVWQFMTAGKQSRAVGAHDMNEHSSRSHCI 712          
BLAST of mRNA_A-nodosum_M_contig1194.21.1 vs. uniprot
Match: A0A7S2W0I4_9STRA (Kinesin-like protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W0I4_9STRA)

HSP 1 Score: 167 bits (424), Expect = 2.070e-45
Identity = 95/166 (57.23%), Postives = 117/166 (70.48%), Query Frame = 1
Query:    1 FEFDRVFKQDSSQGSVFEAVSPLVTSVLDGYNVYIFAYGQTDSGKTSTMEGPNANPGVNIRALTNMFRISRDRSDDVSYTFHISMMEIYNEPIFYLL---RADGSS--KTSLEIRQRAGGGTGVPGLTEVPVASMQEVSAQLERGGKYRAVGARDMNECSSRSHMI 483
            FEFD+ F  DS+Q SVFE V P +TS LDGYNV IFAYGQT SGKT TMEGP  N GVN R+L  +F +   R++++ ++F +S +EIYNE I  LL   R +GS+  K+ L+IRQ A G   VPGLTEVPVAS  EV+A + RG + R VG+ DMNE SSRSH I
Sbjct:  413 FEFDQAFHPDSNQLSVFEHVRPFMTSFLDGYNVCIFAYGQTGSGKTFTMEGPPDNRGVNFRSLEELFSLRDARAEEIEFSFVLSYLEIYNEQIRDLLVDPRRNGSADGKSKLDIRQSATGNV-VPGLTEVPVASTDEVAALMTRGAECRTVGSHDMNEHSSRSHSI 577          
BLAST of mRNA_A-nodosum_M_contig1194.21.1 vs. uniprot
Match: UPI000D627D3F (LOW QUALITY PROTEIN: kinesin-like protein KIN-14S n=1 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=UPI000D627D3F)

HSP 1 Score: 166 bits (419), Expect = 1.030e-44
Identity = 88/161 (54.66%), Postives = 111/161 (68.94%), Query Frame = 1
Query:    1 FEFDRVFKQDSSQGSVFEAVSPLVTSVLDGYNVYIFAYGQTDSGKTSTMEGPNANPGVNIRALTNMFRISRDRSDDVSYTFHISMMEIYNEPIFYLLRADGSSKTSLEIRQRAGGGTGVPGLTEVPVASMQEVSAQLERGGKYRAVGARDMNECSSRSHMI 483
            F+FD +FK + +Q +VF   SPLV S LDG+NV IFAYGQT +GKT TMEG N N GVN RAL  +FR+S +RSD + Y   +SM+E+YNE I  LL  DG+ K  LEI+Q A G   VPGL+EVPV    EV   L+RG + R+VG+ + NE SSRSH +
Sbjct:  170 FKFDHIFKPEDNQEAVFAQTSPLVVSALDGFNVCIFAYGQTGTGKTFTMEGTNENRGVNYRALEELFRVSEERSDIMKYELFVSMLEVYNEKIRDLLVEDGNIK-KLEIKQSAEGTQEVPGLSEVPVYKTDEVWELLKRGSRVRSVGSTNANELSSRSHCL 329          
BLAST of mRNA_A-nodosum_M_contig1194.21.1 vs. uniprot
Match: A0A0D2ML55_9CHLO (Kinesin-like protein KIFC3 (Fragment) n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2ML55_9CHLO)

HSP 1 Score: 158 bits (399), Expect = 1.300e-44
Identity = 87/161 (54.04%), Postives = 105/161 (65.22%), Query Frame = 1
Query:    1 FEFDRVFKQDSSQGSVFEAVSPLVTSVLDGYNVYIFAYGQTDSGKTSTMEGPNANPGVNIRALTNMFRISRDRSDDVSYTFHISMMEIYNEPIFYLLRADGSSKTSLEIRQRAGGGTGVPGLTEVPVASMQEVSAQLERGGKYRAVGARDMNECSSRSHMI 483
            FEFDRVF     Q  VF+ VS LV SVLDGYNV I AYGQT SGKT TM+GP  +PGV  RAL  +FR S   S+ V+Y F  S++EIYNE +F LL     +   L+++Q A GG  VPGL   PV SM +VSA L RG   R+  A +MNE SSRSH++
Sbjct:  148 FEFDRVFGPSDGQQQVFDEVSALVGSVLDGYNVCIMAYGQTGSGKTYTMQGPPEDPGVYSRALAMLFRGSAGLSEQVAYEFGASVLEIYNEQLFDLLSGTKDTSDRLDVKQDADGGMFVPGLVTAPVCSMADVSALLVRGSANRSTFATNMNEHSSRSHLV 308          
BLAST of mRNA_A-nodosum_M_contig1194.21.1 vs. uniprot
Match: A0A061SLQ1_9CHLO (The kifc3 motor domain in complex protein (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SLQ1_9CHLO)

HSP 1 Score: 149 bits (377), Expect = 9.270e-43
Identity = 84/161 (52.17%), Postives = 100/161 (62.11%), Query Frame = 1
Query:    1 FEFDRVFKQDSSQGSVFEAVSPLVTSVLDGYNVYIFAYGQTDSGKTSTMEGPNANPGVNIRALTNMFRISRDRSDDVSYTFHISMMEIYNEPIFYLLRADGSSKTSLEIRQRAGGGTGVPGLTEVPVASMQEVSAQLERGGKYRAVGARDMNECSSRSHMI 483
            FEFDRVF   ++QG VFE VS LVTS LDGYNV IFAYGQT +GKT TMEGP   PG+N R +  +FR   D   D SY    SM+EIYNE +  LL      K  +E+ Q   GG  VPGLTE  V S  ++   +  G K+RAVG  D+N  SSRSH +
Sbjct:    7 FEFDRVFSDTATQGEVFEDVSQLVTSALDGYNVCIFAYGQTGAGKTFTMEGPKEEPGINYRTMKELFRSIEDERPDNSYDITCSMVEIYNEAVHDLLNETDHRK-EMEL-QSCKGGFSVPGLTEEKVLSPGQIFEIMAAGFKHRAVGCHDINAHSSRSHCL 165          
BLAST of mRNA_A-nodosum_M_contig1194.21.1 vs. uniprot
Match: A0A7S2TA19_9CHLO (Kinesin-like protein n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S2TA19_9CHLO)

HSP 1 Score: 155 bits (393), Expect = 1.390e-42
Identity = 83/161 (51.55%), Postives = 107/161 (66.46%), Query Frame = 1
Query:    1 FEFDRVFKQDSSQGSVFEAVSPLVTSVLDGYNVYIFAYGQTDSGKTSTMEGPNANPGVNIRALTNMFRISRDRSDDVSYTFHISMMEIYNEPIFYLLRADGSSKTSLEIRQRAGGGTGVPGLTEVPVASMQEVSAQLERGGKYRAVGARDMNECSSRSHMI 483
            +EFD+VF+ DSSQ +VFE V+PL+ SVLDGYN  IFAYGQT SGKT TMEGP  +PGVN RA+  +FR++ +R +D       S++EIYNE +  LL  D S K  LE +    G   VPGLT + V + Q++   +E   K RAV A +MNE SSRSH +
Sbjct:  142 YEFDKVFQPDSSQTAVFEEVAPLIASVLDGYNFCIFAYGQTGSGKTHTMEGPREDPGVNTRAIAELFRLAEERGEDYEIIVSASVLEIYNEQLRDLLVRDNSKK--LEAKLAKDGSVHVPGLTAMKVETPQDIVKVMEVASKNRAVSATNMNEHSSRSHAM 300          
BLAST of mRNA_A-nodosum_M_contig1194.21.1 vs. uniprot
Match: A0A835Y2E1_9CHLO (Kinesin-like protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835Y2E1_9CHLO)

HSP 1 Score: 159 bits (403), Expect = 2.480e-42
Identity = 85/161 (52.80%), Postives = 110/161 (68.32%), Query Frame = 1
Query:    1 FEFDRVFKQDSSQGSVFEAVSPLVTSVLDGYNVYIFAYGQTDSGKTSTMEGPNANPGVNIRALTNMFRISRDRSDDVSYTFHISMMEIYNEPIFYLLRADGSSKTSLEIRQRAGGGTGVPGLTEVPVASMQEVSAQLERGGKYRAVGARDMNECSSRSHMI 483
            FEFDRV      Q  V++ V+ LVTSVLDGYNV I AYGQT SGKT TMEGP  +PGVN+RAL ++FR++ DRS  +SY F  S++EIYNE I+ LL +       L+++Q   G   VPGL +  VA+M EVSA ++RG   R+  A +MNE SSRSH++
Sbjct:  544 FEFDRVLAPSDGQSKVYDEVAALVTSVLDGYNVAIMAYGQTGSGKTFTMEGPEDDPGVNLRALGDLFRLAADRSGSMSYAFTASVLEIYNEQIYDLLMSGKQDGDKLDVKQGPDG-MYVPGLKQEEVATMDEVSALIDRGKSNRSTFATNMNEHSSRSHLV 703          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1194.21.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLR6_ECTSI3.280e-7276.19Kinesin-like protein n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A835ZG01_9STRA6.300e-5258.79Kinesin-like protein n=1 Tax=Tribonema minus TaxID... [more]
A0A118K6S4_CYNCS1.700e-4654.66Kinesin-like protein n=1 Tax=Cynara cardunculus va... [more]
W7U268_9STRA2.930e-4656.97Kinesin-like protein n=2 Tax=Monodopsidaceae TaxID... [more]
A0A7S2W0I4_9STRA2.070e-4557.23Kinesin-like protein n=1 Tax=Rhizochromulina marin... [more]
UPI000D627D3F1.030e-4454.66LOW QUALITY PROTEIN: kinesin-like protein KIN-14S ... [more]
A0A0D2ML55_9CHLO1.300e-4454.04Kinesin-like protein KIFC3 (Fragment) n=1 Tax=Mono... [more]
A0A061SLQ1_9CHLO9.270e-4352.17The kifc3 motor domain in complex protein (Fragmen... [more]
A0A7S2TA19_9CHLO1.390e-4251.55Kinesin-like protein n=1 Tax=Chloropicon roscoffen... [more]
A0A835Y2E1_9CHLO2.480e-4252.80Kinesin-like protein n=1 Tax=Edaphochlamys debarya... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1194contigA-nodosum_M_contig1194:236198..236683 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LLR6
PFAMsCBM_20,Kinesin,PLAT
Model size486
Max annot lvl2759|Eukaryota
KEGG koko:K10406
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.38e-73
EggNOG OGsCOG5059@1|root,KOG0239@2759|Eukaryota
Descriptionmicrotubule motor activity
Cds size486
COG categoryZ
BRITEko00000,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866612.273119-CDS-A-nodosum_M_contig1194:236197..2366831680866612.273119-CDS-A-nodosum_M_contig1194:236197..236683Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1194 236198..236683 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1194.21.1prot_A-nodosum_M_contig1194.21.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1194 236198..236683 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1194.21.1

>prot_A-nodosum_M_contig1194.21.1 ID=prot_A-nodosum_M_contig1194.21.1|Name=mRNA_A-nodosum_M_contig1194.21.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=162bp
FEFDRVFKQDSSQGSVFEAVSPLVTSVLDGYNVYIFAYGQTDSGKTSTME
GPNANPGVNIRALTNMFRISRDRSDDVSYTFHISMMEIYNEPIFYLLRAD
GSSKTSLEIRQRAGGGTGVPGLTEVPVASMQEVSAQLERGGKYRAVGARD
MNECSSRSHMIF
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mRNA from alignment at A-nodosum_M_contig1194:236198..236683+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1194.21.1 ID=mRNA_A-nodosum_M_contig1194.21.1|Name=mRNA_A-nodosum_M_contig1194.21.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=486bp|location=Sequence derived from alignment at A-nodosum_M_contig1194:236198..236683+ (Ascophyllum nodosum dioecious)
TTCGAGTTCGACCGCGTGTTCAAGCAGGATTCCTCCCAGGGGTCGGTCTT CGAGGCTGTGTCGCCTCTAGTGACCAGCGTGCTTGATGGATACAACGTTT ACATATTCGCGTACGGGCAGACGGACTCCGGTAAGACGTCTACCATGGAG GGGCCTAACGCCAATCCCGGCGTGAACATCAGGGCGTTGACAAACATGTT CAGGATTAGCCGGGATCGCTCCGATGACGTCTCCTACACGTTTCACATAA GTATGATGGAAATCTATAACGAGCCCATTTTCTACCTTCTCCGGGCGGAC GGCAGCAGCAAGACAAGCCTTGAAATTCGTCAGAGGGCGGGAGGAGGAAC CGGCGTTCCGGGCCTCACCGAGGTGCCCGTGGCTTCTATGCAGGAGGTGT CGGCACAGCTGGAGCGGGGGGGGAAGTACCGCGCCGTCGGGGCGCGCGAT ATGAACGAGTGCTCGTCTCGATCTCACATGATATTT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1194:236198..236683+

>mRNA_A-nodosum_M_contig1194.21.1 ID=mRNA_A-nodosum_M_contig1194.21.1|Name=mRNA_A-nodosum_M_contig1194.21.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at A-nodosum_M_contig1194:236198..236683+ (Ascophyllum nodosum dioecious)
TTCGAGTTCGACCGCGTGTTCAAGCAGGATTCCTCCCAGGGGTCGGTCTT
CGAGGCTGTGTCGCCTCTAGTGACCAGCGTGCTTGATGGATACAACGTTT
ACATATTCGCGTACGGGCAGACGGACTCCGGTAAGACGTCTACCATGGAG
GGGCCTAACGCCAATCCCGGCGTGAACATCAGGGCGTTGACAAACATGTT
CAGGATTAGCCGGGATCGCTCCGATGACGTCTCCTACACGTTTCACATAA
GTATGATGGAAATCTATAACGAGCCCATTTTCTACCTTCTCCGGGCGGAC
GGCAGCAGCAAGACAAGCCTTGAAATTCGTCAGAGGGCGGGAGGAGGAAC
CGGCGTTCCGGGCCTCACCGAGGTGCCCGTGGCTTCTATGCAGGAGGTGT
CGGCACAGCTGGAGCGGGGGGGGAAGTACCGCGCCGTCGGGGCGCGCGAT
ATGAACGAGTGCTCGTCTCGATCTCACATGATATTT
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