mRNA_A-nodosum_M_contig1192.8.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1192.8.1
Unique NamemRNA_A-nodosum_M_contig1192.8.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1192.8.1 vs. uniprot
Match: D7FPF7_ECTSI (Probable extracellular nuclease (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF7_ECTSI)

HSP 1 Score: 300 bits (768), Expect = 6.430e-89
Identity = 162/280 (57.86%), Postives = 203/280 (72.50%), Query Frame = 1
Query:    1 LSLSCVVETNFYVRLILATIAPVAVLCALAITCRVALLRNGHSIHAKRVARNKHISVGLFLLFMVYSSVSYTIFQTFVCDSLDSEVTYLRADYDLECGTRIHVVYMTYAGLMILVYPVGIPAMFAWALFINRDGIKSLV---GATNRSWVPPEAEAIKDLWAPYKRSRYYYEVIECGRRIALTGLAVFIYPESTAQVAIETLFAVVFSYISEILSPFAEPLDAWLYRSGTCVIFLSMYLALLLKMETADEESHSQDVFAGLLIAAHGAMVLVVIANALLS 831
            LS SCVV+TNFY RL+ ATI P+ VL ALA+T  V+  RN HS    + A++KH+S+ LF++F+VYSSVS+ IFQTFVC++LD  V YLRADY L C T  H     YAGLMI VYP GIPA F   L  NR  +  +    G+T  +      + ++DLWAPYK  RYY+EV+ECGRRIALTGLAVFIYP S AQVA+E +FA  F  IS++LSPFA+PLDAWLYRSG  VIF+SM+L LLLK++ +DE+S SQ++FA LLI+AH  MVL +   A+LS
Sbjct:  107 LSASCVVDTNFYGRLLFATIGPLVVLGALALTYAVSRSRNRHSPAGIQTAKHKHLSIALFIMFVVYSSVSFNIFQTFVCETLDDGVEYLRADYSLVCSTDTHTAMKVYAGLMIFVYPFGIPAFFTLWLVSNRHDLVKVDANGGSTATAKSLGNLQPMRDLWAPYKPRRYYFEVVECGRRIALTGLAVFIYPGSAAQVALEVVFAAFFIGISDVLSPFADPLDAWLYRSGAWVIFISMFLTLLLKVDASDEDSQSQELFAKLLISAHVGMVLAIAVQAVLS 386          
BLAST of mRNA_A-nodosum_M_contig1192.8.1 vs. uniprot
Match: A0A6H5KHA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHA3_9PHAE)

HSP 1 Score: 299 bits (765), Expect = 1.900e-88
Identity = 157/281 (55.87%), Postives = 200/281 (71.17%), Query Frame = 1
Query:    1 LSLSCVVETNFYVRLILATIAPVAVLCALAITCRVALLRNGHSIHAKRVARNKHISVGLFLLFMVYSSVSYTIFQTFVCDSLDSEVTYLRADYDLECGTRIHVVYMTYAGLMILVYPVGIPAMFAWALFINR-DGIKSLVGATNRSWVPPEAEAIKDLWAPYKRSRYYYEVIECGRRIALTGLAVFIYPESTAQVAIETLFAVVFSYISEILSPFAEPLDAWLYRSGTCVIFLSMYLALLLKMETADEESHSQDVFAGLLIAAHGAMVLVVIANALLSALK 840
            LS  C+VETNFY RL  +TI P+A+L  LA    +A   N HS    R A +KH+S+ LF++F +YSSVS+TIFQTF+C++LD EV YLRADY L C T  H +   YAGLM+LVYP+GIPA+FAW L  NR D ++   G T     P     +KDLW PYK  RY+YE++ECGRRI LTGLAVF++P + AQVAIE  FA     + E+L+PF +P+DAWLYRSG  V+F SMYLALLLK++ +DE S SQ VFA +L+AAH +MVL V+ ++LLSA K
Sbjct:   87 LSFLCLVETNFYGRLAFSTIVPLAILGGLAAKHAIAKRNNRHSQVGMREATDKHLSIALFIVFAIYSSVSFTIFQTFMCETLDDEVEYLRADYSLTCSTSTHTIMEVYAGLMVLVYPIGIPAVFAWWLASNRKDLVQDRSGGTT---TPENLRPMKDLWEPYKPRRYFYELVECGRRIVLTGLAVFLFPGTAAQVAIEVAFAAGLLVVFEVLAPFVDPMDAWLYRSGALVVFFSMYLALLLKVDASDENSESQQVFAAVLVAAHVSMVLAVLLSSLLSAKK 364          
BLAST of mRNA_A-nodosum_M_contig1192.8.1 vs. uniprot
Match: D7FUB5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUB5_ECTSI)

HSP 1 Score: 293 bits (750), Expect = 1.120e-86
Identity = 158/281 (56.23%), Postives = 198/281 (70.46%), Query Frame = 1
Query:    1 LSLSCVVETNFYVRLILATIAPVAVLCALAITCRVALLRNGHSIHAKRVARNKHISVGLFLLFMVYSSVSYTIFQTFVCDSLDSEVTYLRADYDLECGTRIHVVYMTYAGLMILVYPVGIPAMFAWALFINRDGIKSLVGATNRSWVPPE-AEAIKDLWAPYKRSRYYYEVIECGRRIALTGLAVFIYPESTAQVAIETLFAVVFSYISEILSPFAEPLDAWLYRSGTCVIFLSMYLALLLKMETADEESHSQDVFAGLLIAAHGAMVLVVIANALLSALK 840
            LS  CVVETNFY RL  +T+ P+A+L  LA T  +A   N HS    R A +KH+S+ LF++F  YSSVS+TIFQTF+C++LD EV YLRADY L C T  H +   YAGLM+LVYP+GIPA+FAW L  NR   K LV   +     PE    +KDLW PYK  RY+YE++ECGRRI LTGLAVF++P + AQVAIE  FA     + E+L+PF +P+DA LYRSG  V+F SMYLALLLK++ +DE S SQ VFA +L+AAH +MVL V+  +LLSA K
Sbjct:   65 LSFLCVVETNFYGRLAFSTLLPLAILGGLAATHAIAKRNNRHSQVGMREATDKHLSIALFIVFATYSSVSFTIFQTFMCETLDDEVEYLRADYSLTCSTSTHTIMEVYAGLMVLVYPIGIPAVFAWWLASNR---KDLVRERSSGTATPENLRPMKDLWEPYKPRRYFYELVECGRRIGLTGLAVFLFPGTAAQVAIEVAFAAGLLVVFEVLAPFVDPVDAGLYRSGALVVFYSMYLALLLKVDASDESSESQQVFAAVLVAAHVSMVLAVLLRSLLSAKK 342          
BLAST of mRNA_A-nodosum_M_contig1192.8.1 vs. uniprot
Match: A0A6H5JWI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI3_9PHAE)

HSP 1 Score: 296 bits (758), Expect = 1.750e-81
Identity = 153/284 (53.87%), Postives = 201/284 (70.77%), Query Frame = 1
Query:    1 LSLSCVVETNFYVRLILATIAPVAVLCALAITCRVALLRNGHSIHAKRVARNKHISVGLFLLFMVYSSVSYTIFQTFVCDSLDSEVTYLRADYDLECGTRIHVVYMTYAGLMILVYPVGIPAMFAWALFINRDGIKSLVGATNRSWVPPEAEAI---KDLWAPYKRSRYYYEVIECGRRIALTGLAVFIYPESTAQVAIETLFAVVFSYISEILSPFAEPLDAWLYRSGTCVIFLSMYLALLLKMETADEESHSQDVFAGLLIAAHGAMVLVVIANALLSALKG 843
            LS+SC+V+ NFY RL   T+ P+ V   LA T  ++  RN HS    + A++KH+S+ LF+ F+VYSSVS+ IFQTFVC++LD  VTYLRADY L C T +H   M YAGLMILVYPVGIP +++W L  NR  +  +  + N     P  + +   +DLW+ YK  RYY+EV+ECGRRIALTGLA F+ P+S AQVAIE + A +F  +S++LSPFA+P D WLYR+G  +IF SMYLALLLK++ +DE+S SQ  FA +LIAAH  MVLVV+  A+LS  +G
Sbjct:  783 LSVSCIVDVNFYGRLFFTTVGPLVVFGGLAATYAISRSRNRHSPAGMQAAKSKHLSIALFISFVVYSSVSFNIFQTFVCETLDDGVTYLRADYSLTCSTGVHTAMMAYAGLMILVYPVGIPTVYSWWLLSNRHDLVKVGTSGNCLGGAPRLDHLQPMRDLWSSYKPRRYYFEVLECGRRIALTGLAAFLLPDSAAQVAIEVVLAAIFMAVSDVLSPFADPFDGWLYRTGAWIIFFSMYLALLLKVDASDEDSQSQAAFAKVLIAAHVGMVLVVLVQAVLSVRRG 1066          
BLAST of mRNA_A-nodosum_M_contig1192.8.1 vs. uniprot
Match: D7FTT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTT9_ECTSI)

HSP 1 Score: 291 bits (746), Expect = 1.310e-78
Identity = 156/276 (56.52%), Postives = 198/276 (71.74%), Query Frame = 1
Query:    1 LSLSCVVETNFYVRLILATIAPVAVLCALAITCRVALLRNGHSIHAKRVARNKHISVGLFLLFMVYSSVSYTIFQTFVCDSLDSEVTYLRADYDLECGTRIHVVYMTYAGLMILVYPVGIPAMFAWALFINRDGIKSLVGATNRSWVPPEAEAIKDLWAPYKRSRYYYEVIECGRRIALTGLAVFIYPESTAQVAIETLFAVVFSYISEILSPFAEPLDAWLYRSGTCVIFLSMYLALLLKMETADEESHSQDVFAGLLIAAHGAMVLVVIANALL 828
            LS +CV +TNFY RL++ATI PV VL  L  T  VA  RN H   A R  + +H+SV LF++F++Y++VSYTIF+TFVCD+LD   +YLRADY L C T +H  Y  YAGL +LVYPVGIP +F W LF NR  +K      +++ + P A    DLW PYK S YYYEV+EC RRIALTG AVFIYP+S+AQVAI  L A VF  +SEILSPFA P++ WLYR+G  V+F SMYLALLL+++ +DE   SQ+VF+G+++ AH AM LVV+A  LL
Sbjct:  763 LSFACVYDTNFYDRLLMATIGPVLVLGLLGCTYLVARRRNRHCEEAMRDVQRRHLSVTLFVMFVIYAAVSYTIFETFVCDTLDDGNSYLRADYSLTCDTPLHTAYRVYAGLAVLVYPVGIPCVFGWWLFKNRHELKQ-EDRESQAELRPAA----DLWEPYKPSAYYYEVVECFRRIALTGFAVFIYPDSSAQVAIVLLLAAVFMVVSEILSPFARPVEMWLYRAGHYVVFASMYLALLLRVDVSDERDQSQEVFSGVIVIAHVAMFLVVVAQGLL 1033          
BLAST of mRNA_A-nodosum_M_contig1192.8.1 vs. uniprot
Match: A0A6H5L324_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L324_9PHAE)

HSP 1 Score: 289 bits (740), Expect = 7.550e-78
Identity = 155/276 (56.16%), Postives = 196/276 (71.01%), Query Frame = 1
Query:    1 LSLSCVVETNFYVRLILATIAPVAVLCALAITCRVALLRNGHSIHAKRVARNKHISVGLFLLFMVYSSVSYTIFQTFVCDSLDSEVTYLRADYDLECGTRIHVVYMTYAGLMILVYPVGIPAMFAWALFINRDGIKSLVGATNRSWVPPEAEAIKDLWAPYKRSRYYYEVIECGRRIALTGLAVFIYPESTAQVAIETLFAVVFSYISEILSPFAEPLDAWLYRSGTCVIFLSMYLALLLKMETADEESHSQDVFAGLLIAAHGAMVLVVIANALL 828
            LS +CV +TNFY RL++ATI PV VL  L  T  VA  RN H   A R  + +H+SV LF++F++Y++VSYTIF+TFVCD+LD   +YLRADY L C T +H  Y  YAGL +LVYPVGIP +F W LF NR  +K       ++ + P A    DLW PYK S YYYEV+EC RRIALTG AVFIYP+S+AQVAI  L A VF  +SEILSPFA P++ WLYR+G  V+F SMYLALLL+++ +DE   SQ+VF+G+++ AH AM LVV+   LL
Sbjct:  744 LSFACVYDTNFYDRLLMATIGPVLVLGLLGCTYVVARRRNRHCEEAMRDVQRRHLSVTLFVMFVIYAAVSYTIFETFVCDTLDDGNSYLRADYSLTCDTPLHTAYRVYAGLAVLVYPVGIPCIFGWWLFKNRHELKQ-EDREGQAELRPAA----DLWEPYKPSAYYYEVVECFRRIALTGFAVFIYPDSSAQVAIVLLLAAVFMVVSEILSPFARPVEMWLYRAGHYVVFASMYLALLLRVDVSDERDQSQEVFSGVIVMAHVAMFLVVVVQGLL 1014          
BLAST of mRNA_A-nodosum_M_contig1192.8.1 vs. uniprot
Match: D7G8S0_ECTSI (Probable extracellular nuclease (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8S0_ECTSI)

HSP 1 Score: 266 bits (681), Expect = 1.150e-77
Identity = 148/281 (52.67%), Postives = 192/281 (68.33%), Query Frame = 1
Query:    1 LSLSCVVETNFYVRLILATIAPVAVLCALAITCRVALLRNGHSIHAKRVARNKHISVGLFLLFMVYSSVSYTIFQTFVCDSLDSEVTYLRADYDLECGTRIHVVYMTYAGLMILVYPVGIPAMFAW-ALFINRDGIKSLVGATNR--SWVPP--EAEAIKDLWAPYKRSRYYYEVIECGRRIALTGLAVFIYPESTAQVAIETLFAVVFSYISEILSPFAEPLDAWLYRSGTCVIFLSMYLALLLKMETADEESHSQDVFAGLLIAAHGAMVLVVIANALL 828
            LS+SC+V++NFY     ATI P+ V  A A+T  V+  RN HS    + A++KH+S+ LF++F+VYSSV + IFQTFVC+ LD+ + YLRADY L C T +H   M YAGLMI VYPVGIPA +AW  LFI    +K  VGA N     VP     + ++DLWAPYK  RYY+EV+ECG RIALTGLA F+ P S AQ AIE + A +F  +S++LSPF +P DAWLYR G  +   SMYLAL+   + +DE++ SQ VFA +LIAAH  MV V++  A+L
Sbjct:   72 LSVSCIVDSNFYGCRFFATICPLVVFGAQAVTYTVSKSRNRHSPAGMQAAKSKHLSITLFIMFVVYSSVPFNIFQTFVCERLDTGMDYLRADYSLTCYTGVHKAMMVYAGLMIFVYPVGIPAFYAWWLLFIRHYLVK--VGAPNNFLERVPELDHLQPMRDLWAPYKPHRYYFEVVECGHRIALTGLAAFLLPNSAAQAAIEVVLAAIFVAVSDVLSPFVDPFDAWLYRIGGWITCFSMYLALV---DVSDEDNQSQAVFAKVLIAAHAGMVAVIVVQAVL 347          
BLAST of mRNA_A-nodosum_M_contig1192.8.1 vs. uniprot
Match: D7FTU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTU5_ECTSI)

HSP 1 Score: 281 bits (719), Expect = 3.360e-75
Identity = 151/276 (54.71%), Postives = 194/276 (70.29%), Query Frame = 1
Query:    1 LSLSCVVETNFYVRLILATIAPVAVLCALAITCRVALLRNGHSIHAKRVARNKHISVGLFLLFMVYSSVSYTIFQTFVCDSLDSEVTYLRADYDLECGTRIHVVYMTYAGLMILVYPVGIPAMFAWALFINRDGIKSLVGATNRSWVPPEAEAIKDLWAPYKRSRYYYEVIECGRRIALTGLAVFIYPESTAQVAIETLFAVVFSYISEILSPFAEPLDAWLYRSGTCVIFLSMYLALLLKMETADEESHSQDVFAGLLIAAHGAMVLVVIANALL 828
            LSL+CV +T+FY RL+L TI P  VL  L           G +  A  V +++H+SV LF++F++Y++VSYTIF+TFVCD LD   +YLR+DY L C T  H  Y  YAGLMILVYPVGIP +F W LF +R  +K   G   R+ + P A    DLW PYK S YYYEV+EC RRIALTG AVFIYP+S+AQVAI  L A+VF  +SE LSPFA P++ WLYR+G  V+F SMYLALLL+++ +DE + SQ+VF+G+L+ AH AM+LVV+   LL
Sbjct:  768 LSLACVCDTDFYDRLLLTTICPAVVLGLL-----------GCTYLAMGVVKHRHLSVALFIMFVIYATVSYTIFETFVCDPLDDGNSYLRSDYSLTCDTETHTAYRVYAGLMILVYPVGIPCVFGWWLFKHRHELKQ-EGRERRAVLKPAA----DLWEPYKPSTYYYEVVECFRRIALTGFAVFIYPDSSAQVAIVLLLAIVFMVVSEFLSPFARPVEMWLYRTGHYVVFASMYLALLLRVDVSDERNQSQEVFSGVLVIAHAAMLLVVVLQGLL 1027          
BLAST of mRNA_A-nodosum_M_contig1192.8.1 vs. uniprot
Match: D7G021_ECTSI (Probable extracellular nuclease (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G021_ECTSI)

HSP 1 Score: 242 bits (618), Expect = 6.130e-67
Identity = 137/288 (47.57%), Postives = 187/288 (64.93%), Query Frame = 1
Query:    1 LSLSCVVETNFYVRLILATIAPVAVLCALAITCRVALLRNGH--SIHAKRVARNKHISVGLFLLFMVYSSVSYTIFQTFVCDSLDSEVTYLRADYDLECGTRIHVVYMTYAGLMILVYPVGIPAMFAWALFINRDGIKSLVGATNRSWVPPEAEAIKDLWAPYKRSRYYYEVIECGRRIALTGLAVFIYPESTAQVAIETLFAVVFSYISEILSPFAEPLDAWLYRSGTCVIFLSMYLALLLKMETADEESHSQDVFAGLLIAAHGAMVLVVIANALLSALKGFREIQ 858
            LS SC+V+T+F+ RL+  T+ P+AVL  L  T  +A LRN +  S   +   R KH+S+ +F+LF VYSSVS  IF TF C++L+  V+YLRADY   C +R HV +  YAG+M+LVYP+GIPA+F W L  NR  ++S   A N    P +A     LW  YK   +Y+ +IEC RRIALTGL VFI P S AQVAI  L A  F  +SE+L PF +P++ WLY SG+CVIF SMY ALLLK++ ++E S SQ  F+ +LI +H  +   V A  + + ++  RE++
Sbjct:   28 LSFSCLVKTDFFDRLLWKTLGPLAVLGVLQATHVIARLRNRNIPSDSVQLTVRRKHLSLAIFILFFVYSSVSRDIFLTFSCETLEDGVSYLRADYGFVCFSRRHVAFRVYAGVMVLVYPLGIPALFGWWLRRNRHDLRSPSRAENADLEPAKA-----LWESYKGETWYFIIIECVRRIALTGLGVFINPNSAAQVAILLLLAFGFLVLSEVLDPFEKPIETWLYLSGSCVIFASMYAALLLKVDVSNENSESQTAFSAVLILSHVVLFTTVFAQGVFALVQKCREVR 310          
BLAST of mRNA_A-nodosum_M_contig1192.8.1 vs. uniprot
Match: A0A6H5L0E1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0E1_9PHAE)

HSP 1 Score: 246 bits (629), Expect = 2.540e-64
Identity = 134/270 (49.63%), Postives = 172/270 (63.70%), Query Frame = 1
Query:  136 AKRVARNKHISVGLFLLFMVYSSVSYTIFQTFVCDSLDSEVTYLRADYDLECGTRIHVVYMTYAGLMILVYPVGIPAMFAWALFINRDGIKSLVGATNRSWVPPEAEAIKDLWAPYKRSRYYYE---------------------------------------VIECGRRIALTGLAVFIYPESTAQVAIETLFAVVFSYISEILSPFAEPLDAWLYRSGTCVIFLSMYLALLLKMETADEESHSQDVFAGLLIAAHGAMVLVVIANALL 828
            A  V +++H+SV LF++F++Y++VSYTIF+TFVCD LD  ++YLRADY L C T  H  Y  YAGLMILVYPVGIP +F W LF +R  +K   G   R+ + P A    DLW PYK S YYYE                                       V+EC RRIALTG AVFIYP+S+AQVAI  L A+VF  +SE LSPFA P++ WLYR+G  V+F SMYLALLL+++ +DE + SQ+VF+G+L+ AH AM+LVV+   LL
Sbjct:    8 AMGVVKHRHLSVALFVMFVIYATVSYTIFETFVCDPLDDGISYLRADYSLTCETETHTAYRVYAGLMILVYPVGIPCVFGWWLFKHRHELKQ-EGRERRAALKPAA----DLWEPYKPSTYYYEAAQPPPYLDKLPRRLSSQCLPCPPASADMPPSATPTLEKVVECFRRIALTGFAVFIYPDSSAQVAIVLLLAIVFMVVSEFLSPFARPIEMWLYRTGHYVVFASMYLALLLRVDVSDENNQSQEVFSGVLVIAHAAMLLVVVLQGLL 272          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1192.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPF7_ECTSI6.430e-8957.86Probable extracellular nuclease (ISS) n=1 Tax=Ecto... [more]
A0A6H5KHA3_9PHAE1.900e-8855.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUB5_ECTSI1.120e-8656.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JWI3_9PHAE1.750e-8153.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTT9_ECTSI1.310e-7856.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L324_9PHAE7.550e-7856.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8S0_ECTSI1.150e-7752.67Probable extracellular nuclease (ISS) n=1 Tax=Ecto... [more]
D7FTU5_ECTSI3.360e-7554.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G021_ECTSI6.130e-6747.57Probable extracellular nuclease (ISS) n=1 Tax=Ecto... [more]
A0A6H5L0E1_9PHAE2.540e-6449.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1192contigA-nodosum_M_contig1192:49709..52553 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FTU5
PFAMsBeta_helix,Chlam_PMP
Model size2845
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.15e-71
EggNOG OGs2BFIX@1|root,2S176@2759|Eukaryota
Cds size837
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866610.37432-UTR-A-nodosum_M_contig1192:49708..515271680866610.37432-UTR-A-nodosum_M_contig1192:49708..51527Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1192 49709..51527 -
1680866610.3984625-UTR-A-nodosum_M_contig1192:52364..525531680866610.3984625-UTR-A-nodosum_M_contig1192:52364..52553Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1192 52365..52553 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866610.3872244-CDS-A-nodosum_M_contig1192:51527..523641680866610.3872244-CDS-A-nodosum_M_contig1192:51527..52364Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1192 51528..52364 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1192.8.1prot_A-nodosum_M_contig1192.8.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1192 51528..52364 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1192.8.1

>prot_A-nodosum_M_contig1192.8.1 ID=prot_A-nodosum_M_contig1192.8.1|Name=mRNA_A-nodosum_M_contig1192.8.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=279bp
MVYSSVSYTIFQTFVCDSLDSEVTYLRADYDLECGTRIHVVYMTYAGLMI
LVYPVGIPAMFAWALFINRDGIKSLVGATNRSWVPPEAEAIKDLWAPYKR
SRYYYEVIECGRRIALTGLAVFIYPESTAQVAIETLFAVVFSYISEILSP
FAEPLDAWLYRSGTCVIFLSMYLALLLKMETADEESHSQDVFAGLLIAAH
GAMVLVVIANALLSALKGFREIQAIEMPVMTQNPPQRSGSASTRENGIKT
LEEDEDDATSYRSNPIFAEPPQTNVPPL*
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mRNA from alignment at A-nodosum_M_contig1192:49709..52553-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1192.8.1 ID=mRNA_A-nodosum_M_contig1192.8.1|Name=mRNA_A-nodosum_M_contig1192.8.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2845bp|location=Sequence derived from alignment at A-nodosum_M_contig1192:49709..52553- (Ascophyllum nodosum dioecious)
CTGTCACTTTCGTGCGTCGTGGAGACAAACTTTTATGTCCGGCTAATTTT GGCGACGATCGCTCCGGTGGCGGTGCTCTGTGCGCTGGCGATAACCTGTC GAGTTGCCTTGTTACGGAATGGTCACTCGATCCATGCTAAGCGGGTGGCA AGGAATAAACACATCTCTGTGGGGCTCTTTTTGCTATTCATGGTGTACTC TTCAGTGTCCTACACCATCTTTCAGACCTTTGTCTGTGACTCCTTGGACT CCGAGGTTACCTATCTGCGCGCCGATTACGATTTAGAATGCGGTACCAGA ATCCACGTTGTATATATGACCTACGCAGGGCTCATGATTCTCGTGTACCC CGTCGGAATCCCGGCCATGTTTGCTTGGGCGCTGTTCATAAATCGGGATG GTATAAAGAGTTTAGTAGGCGCCACTAATAGAAGCTGGGTACCGCCAGAG GCGGAGGCTATCAAAGACCTCTGGGCGCCGTACAAGCGGAGCCGTTACTA CTACGAGGTCATAGAGTGCGGTCGGCGGATTGCTCTGACGGGCCTCGCCG TTTTCATCTACCCCGAAAGCACGGCGCAGGTGGCAATAGAAACGCTATTC GCGGTCGTCTTCTCTTACATTTCTGAGATTCTCAGCCCTTTCGCCGAACC CCTGGACGCGTGGTTGTACCGTTCCGGAACATGTGTAATCTTTCTCAGCA TGTACCTCGCGCTGTTGCTGAAGATGGAAACTGCAGACGAAGAAAGCCAC AGCCAGGATGTGTTCGCTGGGTTGCTGATTGCCGCACACGGAGCTATGGT CTTGGTTGTGATCGCTAACGCCCTTTTGTCCGCTTTGAAAGGATTCCGGG AAATCCAGGCTATAGAGATGCCCGTGATGACACAGAACCCTCCTCAAAGA TCTGGATCCGCGTCGACGAGAGAGAACGGTATTAAAACTCTCGAGGAGGA TGAAGACGACGCCACTTCATATCGCTCTAATCCAATATTTGCAGAGCCCC CCCAAACCAACGTTCCCCCGCTGTAAACCACGATGTGCAACATCTTGTTT TTATTAAAGTATGGTATCAGATTCATTTTAACGCTTTATTTTCCCGTCTA TCGACGAAATATGCATGGGTGATAGACCATTGCAATTGCTTATGTGTACT AGGGCTCGGCACAATACAGTATTGCGAAGGGGATTGGAGGTTTATGGCCG CGTGGCTGAGGGGAGAGGAAAAGGGGCCCGAAAGACGGCAGTGGAAGAGA GGGGCGGAAGAGTTGGATAAGGTTGAGGTTGCACCTGGGGTGACTGTAGG AAGCTTGAGACGCGTCGGGGCCACATTGGTTGAACCGACCGAAGGACTCC CGAAGCGGTGGGGGCTGCGCCGATAGGGAAGCCTGAGAACCCTGAGAGAG AGTACGGTATTATTGTATATATTATGGTTTTCTTTGGGTACAAATGCAGG GTATTTGCGATCCGGAAAGGCATCTAACGGCTCGCGGTTCGAGCTTTTGG GCATTTGCTTTGTTGGTTTGCTTCCCTTCCTTTTTGTTTTGTTTTTGTTT TTATGCTCTCATTGGAGCATTTATAGATTTGTTTAAACATTTTCATCTCC AGCACACCACGTACCGGATTGGCAACCGCGCATGTTACTGGGTATGGTTA ATGCCCGATCGGTTGGTGTGAAGAATACATGCGGTGTCGAATTTCAGTAG CCGACTGTCTCTAGGGAAACGGTATATATAAACTCTGATAAGGGGTGCCT CTATCAAACCCAAATCTTGATCCTAGAGAGAACGTCCCTATTAATAGGTG AACTGTACGGCTGAGGCATGGGGTTGGATAAACTAAAAATTCCAAGTAGG TGTTTAATATACCTGTAGCTCTAGAAGTAATCGATTTTTTTATTTCAGCG GTCACTTGCAGCAGCAGTTTATGAGCCCCAGATACAGTAAGGGCACTAAT CATTGTCAGCTTTGCGCGCGTAAACCAACAGGTTTGATAAACTAAATGTG GTCAATGAGTTCTCTGCTGTTCTTCTCTGTAGCCTCAACTCGTACCATGT CGCTACTTGTGTTTGTGTTTACCCGCTCTGTCGTTTTCCCCAACATTTTC ACGCGAGGGTGCAACAGCATTTTTTTTGTCGGGTCTTGTTCATTTTATTG CAGCTCAAGTAGAACTTTGTACTCGTAGTCTACCGGATTGTCTGACAGCA GCAGCTGTAGTACCGACCTACACAGTATACTGCGGGCAGGTACTAGACCT ATCTTAGCTTCGACCTATCTGCATACTTGTGCAGGCGTTCCTTTCGCCAG GCTCAGGGTGATCCAGTAGTGTGATGCCGACAGTACCATTGCAGTATTCT ATTGGTTGTAACCTACCGGTACGGTTTAGGGCAGCGACTTGATTGTAGAC TAATCCAACAGTGAGGAGTAGTATCTGGTACAATACAGCTGCAGTATTAC ATACCGTATCGGTTTAATGTTTACTTTGGGGTCATTCTCGTTGAAGTGCA TTATTAGCTCCACTTCTTTGCTGCGAACGGTGCTACTACGTACTATTATT ATACTGTTGCTGTTAAGGACTACTGGCCCGGTGCCGGTGCCGGTACACTT TCAAATTTTCAGGCGTAAGCAGGGACAGTAACCTGCTTTTTTCCCCTCCT GTTCAGCTGATCACGGGCAAGATTGGCAACTGTCCCGGCTGATTCCCAGT CTGCTGGTGTATCTGATGATCGTGATTAAATCAATTGATGCATGCACTAT TGGTACCGTACTTTTTTAAAATCTGACTAAAATACATGATTTGCGTACGT TGTGGATAGCCTAACCGATTCGTTGAGGACATTTGGTGATTCAGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1192:49709..52553-

>mRNA_A-nodosum_M_contig1192.8.1 ID=mRNA_A-nodosum_M_contig1192.8.1|Name=mRNA_A-nodosum_M_contig1192.8.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=837bp|location=Sequence derived from alignment at A-nodosum_M_contig1192:49709..52553- (Ascophyllum nodosum dioecious)
ATGGTGTACTCTTCAGTGTCCTACACCATCTTTCAGACCTTTGTCTGTGA
CTCCTTGGACTCCGAGGTTACCTATCTGCGCGCCGATTACGATTTAGAAT
GCGGTACCAGAATCCACGTTGTATATATGACCTACGCAGGGCTCATGATT
CTCGTGTACCCCGTCGGAATCCCGGCCATGTTTGCTTGGGCGCTGTTCAT
AAATCGGGATGGTATAAAGAGTTTAGTAGGCGCCACTAATAGAAGCTGGG
TACCGCCAGAGGCGGAGGCTATCAAAGACCTCTGGGCGCCGTACAAGCGG
AGCCGTTACTACTACGAGGTCATAGAGTGCGGTCGGCGGATTGCTCTGAC
GGGCCTCGCCGTTTTCATCTACCCCGAAAGCACGGCGCAGGTGGCAATAG
AAACGCTATTCGCGGTCGTCTTCTCTTACATTTCTGAGATTCTCAGCCCT
TTCGCCGAACCCCTGGACGCGTGGTTGTACCGTTCCGGAACATGTGTAAT
CTTTCTCAGCATGTACCTCGCGCTGTTGCTGAAGATGGAAACTGCAGACG
AAGAAAGCCACAGCCAGGATGTGTTCGCTGGGTTGCTGATTGCCGCACAC
GGAGCTATGGTCTTGGTTGTGATCGCTAACGCCCTTTTGTCCGCTTTGAA
AGGATTCCGGGAAATCCAGGCTATAGAGATGCCCGTGATGACACAGAACC
CTCCTCAAAGATCTGGATCCGCGTCGACGAGAGAGAACGGTATTAAAACT
CTCGAGGAGGATGAAGACGACGCCACTTCATATCGCTCTAATCCAATATT
TGCAGAGCCCCCCCAAACCAACGTTCCCCCGCTGTAA
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