mRNA_A-nodosum_M_contig1192.8.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1192.8.1 vs. uniprot
Match: D7FPF7_ECTSI (Probable extracellular nuclease (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF7_ECTSI) HSP 1 Score: 300 bits (768), Expect = 6.430e-89 Identity = 162/280 (57.86%), Postives = 203/280 (72.50%), Query Frame = 1
Query: 1 LSLSCVVETNFYVRLILATIAPVAVLCALAITCRVALLRNGHSIHAKRVARNKHISVGLFLLFMVYSSVSYTIFQTFVCDSLDSEVTYLRADYDLECGTRIHVVYMTYAGLMILVYPVGIPAMFAWALFINRDGIKSLV---GATNRSWVPPEAEAIKDLWAPYKRSRYYYEVIECGRRIALTGLAVFIYPESTAQVAIETLFAVVFSYISEILSPFAEPLDAWLYRSGTCVIFLSMYLALLLKMETADEESHSQDVFAGLLIAAHGAMVLVVIANALLS 831
LS SCVV+TNFY RL+ ATI P+ VL ALA+T V+ RN HS + A++KH+S+ LF++F+VYSSVS+ IFQTFVC++LD V YLRADY L C T H YAGLMI VYP GIPA F L NR + + G+T + + ++DLWAPYK RYY+EV+ECGRRIALTGLAVFIYP S AQVA+E +FA F IS++LSPFA+PLDAWLYRSG VIF+SM+L LLLK++ +DE+S SQ++FA LLI+AH MVL + A+LS
Sbjct: 107 LSASCVVDTNFYGRLLFATIGPLVVLGALALTYAVSRSRNRHSPAGIQTAKHKHLSIALFIMFVVYSSVSFNIFQTFVCETLDDGVEYLRADYSLVCSTDTHTAMKVYAGLMIFVYPFGIPAFFTLWLVSNRHDLVKVDANGGSTATAKSLGNLQPMRDLWAPYKPRRYYFEVVECGRRIALTGLAVFIYPGSAAQVALEVVFAAFFIGISDVLSPFADPLDAWLYRSGAWVIFISMFLTLLLKVDASDEDSQSQELFAKLLISAHVGMVLAIAVQAVLS 386
BLAST of mRNA_A-nodosum_M_contig1192.8.1 vs. uniprot
Match: A0A6H5KHA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHA3_9PHAE) HSP 1 Score: 299 bits (765), Expect = 1.900e-88 Identity = 157/281 (55.87%), Postives = 200/281 (71.17%), Query Frame = 1
Query: 1 LSLSCVVETNFYVRLILATIAPVAVLCALAITCRVALLRNGHSIHAKRVARNKHISVGLFLLFMVYSSVSYTIFQTFVCDSLDSEVTYLRADYDLECGTRIHVVYMTYAGLMILVYPVGIPAMFAWALFINR-DGIKSLVGATNRSWVPPEAEAIKDLWAPYKRSRYYYEVIECGRRIALTGLAVFIYPESTAQVAIETLFAVVFSYISEILSPFAEPLDAWLYRSGTCVIFLSMYLALLLKMETADEESHSQDVFAGLLIAAHGAMVLVVIANALLSALK 840
LS C+VETNFY RL +TI P+A+L LA +A N HS R A +KH+S+ LF++F +YSSVS+TIFQTF+C++LD EV YLRADY L C T H + YAGLM+LVYP+GIPA+FAW L NR D ++ G T P +KDLW PYK RY+YE++ECGRRI LTGLAVF++P + AQVAIE FA + E+L+PF +P+DAWLYRSG V+F SMYLALLLK++ +DE S SQ VFA +L+AAH +MVL V+ ++LLSA K
Sbjct: 87 LSFLCLVETNFYGRLAFSTIVPLAILGGLAAKHAIAKRNNRHSQVGMREATDKHLSIALFIVFAIYSSVSFTIFQTFMCETLDDEVEYLRADYSLTCSTSTHTIMEVYAGLMVLVYPIGIPAVFAWWLASNRKDLVQDRSGGTT---TPENLRPMKDLWEPYKPRRYFYELVECGRRIVLTGLAVFLFPGTAAQVAIEVAFAAGLLVVFEVLAPFVDPMDAWLYRSGALVVFFSMYLALLLKVDASDENSESQQVFAAVLVAAHVSMVLAVLLSSLLSAKK 364
BLAST of mRNA_A-nodosum_M_contig1192.8.1 vs. uniprot
Match: D7FUB5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUB5_ECTSI) HSP 1 Score: 293 bits (750), Expect = 1.120e-86 Identity = 158/281 (56.23%), Postives = 198/281 (70.46%), Query Frame = 1
Query: 1 LSLSCVVETNFYVRLILATIAPVAVLCALAITCRVALLRNGHSIHAKRVARNKHISVGLFLLFMVYSSVSYTIFQTFVCDSLDSEVTYLRADYDLECGTRIHVVYMTYAGLMILVYPVGIPAMFAWALFINRDGIKSLVGATNRSWVPPE-AEAIKDLWAPYKRSRYYYEVIECGRRIALTGLAVFIYPESTAQVAIETLFAVVFSYISEILSPFAEPLDAWLYRSGTCVIFLSMYLALLLKMETADEESHSQDVFAGLLIAAHGAMVLVVIANALLSALK 840
LS CVVETNFY RL +T+ P+A+L LA T +A N HS R A +KH+S+ LF++F YSSVS+TIFQTF+C++LD EV YLRADY L C T H + YAGLM+LVYP+GIPA+FAW L NR K LV + PE +KDLW PYK RY+YE++ECGRRI LTGLAVF++P + AQVAIE FA + E+L+PF +P+DA LYRSG V+F SMYLALLLK++ +DE S SQ VFA +L+AAH +MVL V+ +LLSA K
Sbjct: 65 LSFLCVVETNFYGRLAFSTLLPLAILGGLAATHAIAKRNNRHSQVGMREATDKHLSIALFIVFATYSSVSFTIFQTFMCETLDDEVEYLRADYSLTCSTSTHTIMEVYAGLMVLVYPIGIPAVFAWWLASNR---KDLVRERSSGTATPENLRPMKDLWEPYKPRRYFYELVECGRRIGLTGLAVFLFPGTAAQVAIEVAFAAGLLVVFEVLAPFVDPVDAGLYRSGALVVFYSMYLALLLKVDASDESSESQQVFAAVLVAAHVSMVLAVLLRSLLSAKK 342
BLAST of mRNA_A-nodosum_M_contig1192.8.1 vs. uniprot
Match: A0A6H5JWI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI3_9PHAE) HSP 1 Score: 296 bits (758), Expect = 1.750e-81 Identity = 153/284 (53.87%), Postives = 201/284 (70.77%), Query Frame = 1
Query: 1 LSLSCVVETNFYVRLILATIAPVAVLCALAITCRVALLRNGHSIHAKRVARNKHISVGLFLLFMVYSSVSYTIFQTFVCDSLDSEVTYLRADYDLECGTRIHVVYMTYAGLMILVYPVGIPAMFAWALFINRDGIKSLVGATNRSWVPPEAEAI---KDLWAPYKRSRYYYEVIECGRRIALTGLAVFIYPESTAQVAIETLFAVVFSYISEILSPFAEPLDAWLYRSGTCVIFLSMYLALLLKMETADEESHSQDVFAGLLIAAHGAMVLVVIANALLSALKG 843
LS+SC+V+ NFY RL T+ P+ V LA T ++ RN HS + A++KH+S+ LF+ F+VYSSVS+ IFQTFVC++LD VTYLRADY L C T +H M YAGLMILVYPVGIP +++W L NR + + + N P + + +DLW+ YK RYY+EV+ECGRRIALTGLA F+ P+S AQVAIE + A +F +S++LSPFA+P D WLYR+G +IF SMYLALLLK++ +DE+S SQ FA +LIAAH MVLVV+ A+LS +G
Sbjct: 783 LSVSCIVDVNFYGRLFFTTVGPLVVFGGLAATYAISRSRNRHSPAGMQAAKSKHLSIALFISFVVYSSVSFNIFQTFVCETLDDGVTYLRADYSLTCSTGVHTAMMAYAGLMILVYPVGIPTVYSWWLLSNRHDLVKVGTSGNCLGGAPRLDHLQPMRDLWSSYKPRRYYFEVLECGRRIALTGLAAFLLPDSAAQVAIEVVLAAIFMAVSDVLSPFADPFDGWLYRTGAWIIFFSMYLALLLKVDASDEDSQSQAAFAKVLIAAHVGMVLVVLVQAVLSVRRG 1066
BLAST of mRNA_A-nodosum_M_contig1192.8.1 vs. uniprot
Match: D7FTT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTT9_ECTSI) HSP 1 Score: 291 bits (746), Expect = 1.310e-78 Identity = 156/276 (56.52%), Postives = 198/276 (71.74%), Query Frame = 1
Query: 1 LSLSCVVETNFYVRLILATIAPVAVLCALAITCRVALLRNGHSIHAKRVARNKHISVGLFLLFMVYSSVSYTIFQTFVCDSLDSEVTYLRADYDLECGTRIHVVYMTYAGLMILVYPVGIPAMFAWALFINRDGIKSLVGATNRSWVPPEAEAIKDLWAPYKRSRYYYEVIECGRRIALTGLAVFIYPESTAQVAIETLFAVVFSYISEILSPFAEPLDAWLYRSGTCVIFLSMYLALLLKMETADEESHSQDVFAGLLIAAHGAMVLVVIANALL 828
LS +CV +TNFY RL++ATI PV VL L T VA RN H A R + +H+SV LF++F++Y++VSYTIF+TFVCD+LD +YLRADY L C T +H Y YAGL +LVYPVGIP +F W LF NR +K +++ + P A DLW PYK S YYYEV+EC RRIALTG AVFIYP+S+AQVAI L A VF +SEILSPFA P++ WLYR+G V+F SMYLALLL+++ +DE SQ+VF+G+++ AH AM LVV+A LL
Sbjct: 763 LSFACVYDTNFYDRLLMATIGPVLVLGLLGCTYLVARRRNRHCEEAMRDVQRRHLSVTLFVMFVIYAAVSYTIFETFVCDTLDDGNSYLRADYSLTCDTPLHTAYRVYAGLAVLVYPVGIPCVFGWWLFKNRHELKQ-EDRESQAELRPAA----DLWEPYKPSAYYYEVVECFRRIALTGFAVFIYPDSSAQVAIVLLLAAVFMVVSEILSPFARPVEMWLYRAGHYVVFASMYLALLLRVDVSDERDQSQEVFSGVIVIAHVAMFLVVVAQGLL 1033
BLAST of mRNA_A-nodosum_M_contig1192.8.1 vs. uniprot
Match: A0A6H5L324_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L324_9PHAE) HSP 1 Score: 289 bits (740), Expect = 7.550e-78 Identity = 155/276 (56.16%), Postives = 196/276 (71.01%), Query Frame = 1
Query: 1 LSLSCVVETNFYVRLILATIAPVAVLCALAITCRVALLRNGHSIHAKRVARNKHISVGLFLLFMVYSSVSYTIFQTFVCDSLDSEVTYLRADYDLECGTRIHVVYMTYAGLMILVYPVGIPAMFAWALFINRDGIKSLVGATNRSWVPPEAEAIKDLWAPYKRSRYYYEVIECGRRIALTGLAVFIYPESTAQVAIETLFAVVFSYISEILSPFAEPLDAWLYRSGTCVIFLSMYLALLLKMETADEESHSQDVFAGLLIAAHGAMVLVVIANALL 828
LS +CV +TNFY RL++ATI PV VL L T VA RN H A R + +H+SV LF++F++Y++VSYTIF+TFVCD+LD +YLRADY L C T +H Y YAGL +LVYPVGIP +F W LF NR +K ++ + P A DLW PYK S YYYEV+EC RRIALTG AVFIYP+S+AQVAI L A VF +SEILSPFA P++ WLYR+G V+F SMYLALLL+++ +DE SQ+VF+G+++ AH AM LVV+ LL
Sbjct: 744 LSFACVYDTNFYDRLLMATIGPVLVLGLLGCTYVVARRRNRHCEEAMRDVQRRHLSVTLFVMFVIYAAVSYTIFETFVCDTLDDGNSYLRADYSLTCDTPLHTAYRVYAGLAVLVYPVGIPCIFGWWLFKNRHELKQ-EDREGQAELRPAA----DLWEPYKPSAYYYEVVECFRRIALTGFAVFIYPDSSAQVAIVLLLAAVFMVVSEILSPFARPVEMWLYRAGHYVVFASMYLALLLRVDVSDERDQSQEVFSGVIVMAHVAMFLVVVVQGLL 1014
BLAST of mRNA_A-nodosum_M_contig1192.8.1 vs. uniprot
Match: D7G8S0_ECTSI (Probable extracellular nuclease (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8S0_ECTSI) HSP 1 Score: 266 bits (681), Expect = 1.150e-77 Identity = 148/281 (52.67%), Postives = 192/281 (68.33%), Query Frame = 1
Query: 1 LSLSCVVETNFYVRLILATIAPVAVLCALAITCRVALLRNGHSIHAKRVARNKHISVGLFLLFMVYSSVSYTIFQTFVCDSLDSEVTYLRADYDLECGTRIHVVYMTYAGLMILVYPVGIPAMFAW-ALFINRDGIKSLVGATNR--SWVPP--EAEAIKDLWAPYKRSRYYYEVIECGRRIALTGLAVFIYPESTAQVAIETLFAVVFSYISEILSPFAEPLDAWLYRSGTCVIFLSMYLALLLKMETADEESHSQDVFAGLLIAAHGAMVLVVIANALL 828
LS+SC+V++NFY ATI P+ V A A+T V+ RN HS + A++KH+S+ LF++F+VYSSV + IFQTFVC+ LD+ + YLRADY L C T +H M YAGLMI VYPVGIPA +AW LFI +K VGA N VP + ++DLWAPYK RYY+EV+ECG RIALTGLA F+ P S AQ AIE + A +F +S++LSPF +P DAWLYR G + SMYLAL+ + +DE++ SQ VFA +LIAAH MV V++ A+L
Sbjct: 72 LSVSCIVDSNFYGCRFFATICPLVVFGAQAVTYTVSKSRNRHSPAGMQAAKSKHLSITLFIMFVVYSSVPFNIFQTFVCERLDTGMDYLRADYSLTCYTGVHKAMMVYAGLMIFVYPVGIPAFYAWWLLFIRHYLVK--VGAPNNFLERVPELDHLQPMRDLWAPYKPHRYYFEVVECGHRIALTGLAAFLLPNSAAQAAIEVVLAAIFVAVSDVLSPFVDPFDAWLYRIGGWITCFSMYLALV---DVSDEDNQSQAVFAKVLIAAHAGMVAVIVVQAVL 347
BLAST of mRNA_A-nodosum_M_contig1192.8.1 vs. uniprot
Match: D7FTU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTU5_ECTSI) HSP 1 Score: 281 bits (719), Expect = 3.360e-75 Identity = 151/276 (54.71%), Postives = 194/276 (70.29%), Query Frame = 1
Query: 1 LSLSCVVETNFYVRLILATIAPVAVLCALAITCRVALLRNGHSIHAKRVARNKHISVGLFLLFMVYSSVSYTIFQTFVCDSLDSEVTYLRADYDLECGTRIHVVYMTYAGLMILVYPVGIPAMFAWALFINRDGIKSLVGATNRSWVPPEAEAIKDLWAPYKRSRYYYEVIECGRRIALTGLAVFIYPESTAQVAIETLFAVVFSYISEILSPFAEPLDAWLYRSGTCVIFLSMYLALLLKMETADEESHSQDVFAGLLIAAHGAMVLVVIANALL 828
LSL+CV +T+FY RL+L TI P VL L G + A V +++H+SV LF++F++Y++VSYTIF+TFVCD LD +YLR+DY L C T H Y YAGLMILVYPVGIP +F W LF +R +K G R+ + P A DLW PYK S YYYEV+EC RRIALTG AVFIYP+S+AQVAI L A+VF +SE LSPFA P++ WLYR+G V+F SMYLALLL+++ +DE + SQ+VF+G+L+ AH AM+LVV+ LL
Sbjct: 768 LSLACVCDTDFYDRLLLTTICPAVVLGLL-----------GCTYLAMGVVKHRHLSVALFIMFVIYATVSYTIFETFVCDPLDDGNSYLRSDYSLTCDTETHTAYRVYAGLMILVYPVGIPCVFGWWLFKHRHELKQ-EGRERRAVLKPAA----DLWEPYKPSTYYYEVVECFRRIALTGFAVFIYPDSSAQVAIVLLLAIVFMVVSEFLSPFARPVEMWLYRTGHYVVFASMYLALLLRVDVSDERNQSQEVFSGVLVIAHAAMLLVVVLQGLL 1027
BLAST of mRNA_A-nodosum_M_contig1192.8.1 vs. uniprot
Match: D7G021_ECTSI (Probable extracellular nuclease (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G021_ECTSI) HSP 1 Score: 242 bits (618), Expect = 6.130e-67 Identity = 137/288 (47.57%), Postives = 187/288 (64.93%), Query Frame = 1
Query: 1 LSLSCVVETNFYVRLILATIAPVAVLCALAITCRVALLRNGH--SIHAKRVARNKHISVGLFLLFMVYSSVSYTIFQTFVCDSLDSEVTYLRADYDLECGTRIHVVYMTYAGLMILVYPVGIPAMFAWALFINRDGIKSLVGATNRSWVPPEAEAIKDLWAPYKRSRYYYEVIECGRRIALTGLAVFIYPESTAQVAIETLFAVVFSYISEILSPFAEPLDAWLYRSGTCVIFLSMYLALLLKMETADEESHSQDVFAGLLIAAHGAMVLVVIANALLSALKGFREIQ 858
LS SC+V+T+F+ RL+ T+ P+AVL L T +A LRN + S + R KH+S+ +F+LF VYSSVS IF TF C++L+ V+YLRADY C +R HV + YAG+M+LVYP+GIPA+F W L NR ++S A N P +A LW YK +Y+ +IEC RRIALTGL VFI P S AQVAI L A F +SE+L PF +P++ WLY SG+CVIF SMY ALLLK++ ++E S SQ F+ +LI +H + V A + + ++ RE++
Sbjct: 28 LSFSCLVKTDFFDRLLWKTLGPLAVLGVLQATHVIARLRNRNIPSDSVQLTVRRKHLSLAIFILFFVYSSVSRDIFLTFSCETLEDGVSYLRADYGFVCFSRRHVAFRVYAGVMVLVYPLGIPALFGWWLRRNRHDLRSPSRAENADLEPAKA-----LWESYKGETWYFIIIECVRRIALTGLGVFINPNSAAQVAILLLLAFGFLVLSEVLDPFEKPIETWLYLSGSCVIFASMYAALLLKVDVSNENSESQTAFSAVLILSHVVLFTTVFAQGVFALVQKCREVR 310
BLAST of mRNA_A-nodosum_M_contig1192.8.1 vs. uniprot
Match: A0A6H5L0E1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0E1_9PHAE) HSP 1 Score: 246 bits (629), Expect = 2.540e-64 Identity = 134/270 (49.63%), Postives = 172/270 (63.70%), Query Frame = 1
Query: 136 AKRVARNKHISVGLFLLFMVYSSVSYTIFQTFVCDSLDSEVTYLRADYDLECGTRIHVVYMTYAGLMILVYPVGIPAMFAWALFINRDGIKSLVGATNRSWVPPEAEAIKDLWAPYKRSRYYYE---------------------------------------VIECGRRIALTGLAVFIYPESTAQVAIETLFAVVFSYISEILSPFAEPLDAWLYRSGTCVIFLSMYLALLLKMETADEESHSQDVFAGLLIAAHGAMVLVVIANALL 828
A V +++H+SV LF++F++Y++VSYTIF+TFVCD LD ++YLRADY L C T H Y YAGLMILVYPVGIP +F W LF +R +K G R+ + P A DLW PYK S YYYE V+EC RRIALTG AVFIYP+S+AQVAI L A+VF +SE LSPFA P++ WLYR+G V+F SMYLALLL+++ +DE + SQ+VF+G+L+ AH AM+LVV+ LL
Sbjct: 8 AMGVVKHRHLSVALFVMFVIYATVSYTIFETFVCDPLDDGISYLRADYSLTCETETHTAYRVYAGLMILVYPVGIPCVFGWWLFKHRHELKQ-EGRERRAALKPAA----DLWEPYKPSTYYYEAAQPPPYLDKLPRRLSSQCLPCPPASADMPPSATPTLEKVVECFRRIALTGFAVFIYPDSSAQVAIVLLLAIVFMVVSEFLSPFARPIEMWLYRTGHYVVFASMYLALLLRVDVSDENNQSQEVFSGVLVIAHAAMLLVVVLQGLL 272 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1192.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1192.8.1 >prot_A-nodosum_M_contig1192.8.1 ID=prot_A-nodosum_M_contig1192.8.1|Name=mRNA_A-nodosum_M_contig1192.8.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=279bp MVYSSVSYTIFQTFVCDSLDSEVTYLRADYDLECGTRIHVVYMTYAGLMIback to top mRNA from alignment at A-nodosum_M_contig1192:49709..52553- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1192.8.1 ID=mRNA_A-nodosum_M_contig1192.8.1|Name=mRNA_A-nodosum_M_contig1192.8.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2845bp|location=Sequence derived from alignment at A-nodosum_M_contig1192:49709..52553- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1192:49709..52553- >mRNA_A-nodosum_M_contig1192.8.1 ID=mRNA_A-nodosum_M_contig1192.8.1|Name=mRNA_A-nodosum_M_contig1192.8.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=837bp|location=Sequence derived from alignment at A-nodosum_M_contig1192:49709..52553- (Ascophyllum nodosum dioecious)back to top |