mRNA_A-nodosum_M_contig11900.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig11900.1.1
Unique NamemRNA_A-nodosum_M_contig11900.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig11900.1.1 vs. uniprot
Match: B7FRE9_PHATC (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FRE9_PHATC)

HSP 1 Score: 92.4 bits (228), Expect = 4.540e-19
Identity = 42/74 (56.76%), Postives = 52/74 (70.27%), Query Frame = 1 
Query:  250 MKDEGRGITGDVGTAQWMAPEVLANLPYNRAVDVYSFGIVCWELLIREVPYEDLSQRQVADEVLDRGLRPVIPQ 471
            +K   R +TG+ GT QWMAPEVLAN  YN   DV+S+GI+CWELL RE PYE ++  Q A  VL+R  RP IP+
Sbjct:  157 LKAHERSMTGNCGTVQWMAPEVLANKSYNEKADVFSYGIICWELLTRECPYEGMTAIQCALAVLNRDRRPEIPK 230
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BLAST of mRNA_A-nodosum_M_contig11900.1.1 vs. uniprot
Match: A0A7S3YBY1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YBY1_HETAK)

HSP 1 Score: 88.2 bits (217), Expect = 2.930e-18
Identity = 39/66 (59.09%), Postives = 48/66 (72.73%), Query Frame = 1 
Query:  271 ITGDVGTAQWMAPEVLANLPYNRAVDVYSFGIVCWELLIREVPYEDLSQRQVADEVLDRGLRPVIP 468
            +TG+ GT QWMAPEVL N  Y+ + DV+SF IVCWE+L +  PYE +SQ QV   VL+ GLRP IP
Sbjct:   72 MTGNCGTVQWMAPEVLGNQKYSESADVFSFSIVCWEMLSKACPYEGMSQIQVGMAVLNHGLRPKIP 137
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BLAST of mRNA_A-nodosum_M_contig11900.1.1 vs. uniprot
Match: A0A6S8IK00_9STRA (Hypothetical protein n=2 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A6S8IK00_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 5.170e-18
Identity = 41/74 (55.41%), Postives = 53/74 (71.62%), Query Frame = 1 
Query:  250 MKDEGRGITGDVGTAQWMAPEVLANLPYNRAVDVYSFGIVCWELLIREVPYEDLSQRQVADEVLDRGLRPVIPQ 471
            +K + R +TG+ GT QWMAPEVLAN  YN   D+YS+GI+ WELL R+ PY+D+S  Q A  VL+R  RP IP+
Sbjct:  839 LKAQDRSMTGNCGTVQWMAPEVLANQAYNEKADIYSYGIILWELLTRQCPYDDMSAIQCALAVLNRNHRPEIPR 912
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BLAST of mRNA_A-nodosum_M_contig11900.1.1 vs. uniprot
Match: A0A1Z5JP08_FISSO (Sterile alpha motif and leucine zipper containing kinase AZK n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JP08_FISSO)

HSP 1 Score: 92.0 bits (227), Expect = 6.910e-18
Identity = 41/74 (55.41%), Postives = 53/74 (71.62%), Query Frame = 1 
Query:  250 MKDEGRGITGDVGTAQWMAPEVLANLPYNRAVDVYSFGIVCWELLIREVPYEDLSQRQVADEVLDRGLRPVIPQ 471
            +K + R +TG+ GT QWMAPEVLAN  YN   DV+SFGI+CWELL R+ PYE ++  Q A  VL+R  RP +P+
Sbjct:  757 LKAQERSMTGNCGTVQWMAPEVLANQSYNEKADVFSFGIICWELLTRQCPYEGMTAIQCALAVLNRDSRPEMPK 830
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BLAST of mRNA_A-nodosum_M_contig11900.1.1 vs. uniprot
Match: A0A7S1BD91_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BD91_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 8.510e-18
Identity = 38/74 (51.35%), Postives = 50/74 (67.57%), Query Frame = 1 
Query:  250 MKDEGRGITGDVGTAQWMAPEVLANLPYNRAVDVYSFGIVCWELLIREVPYEDLSQRQVADEVLDRGLRPVIPQ 471
            ++     +TG+ GT QWMAPEVL++  Y+   DVYSFGI+ WELL RE PYE ++  Q A  +L+ G RP IPQ
Sbjct:   45 LQQHDNSMTGNCGTVQWMAPEVLSSQRYSMPADVYSFGIILWELLTRECPYEGMTPIQCAMSILNEGKRPTIPQ 118
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BLAST of mRNA_A-nodosum_M_contig11900.1.1 vs. uniprot
Match: A0A7S1G4A3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G4A3_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.410e-17
Identity = 39/67 (58.21%), Postives = 47/67 (70.15%), Query Frame = 1 
Query:  271 ITGDVGTAQWMAPEVLANLPYNRAVDVYSFGIVCWELLIREVPYEDLSQRQVADEVLDRGLRPVIPQ 471
            +TG+ GT QWMAPEVL N  Y+   DVYSFGIVCWEL+ R  P+E +S  QVA  VL  G RP +P+
Sbjct:   58 MTGNTGTFQWMAPEVLGNQRYSEGADVYSFGIVCWELVSRRCPFETMSGVQVAMAVLRDGARPPVPE 124
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BLAST of mRNA_A-nodosum_M_contig11900.1.1 vs. uniprot
Match: A0A1E7FA88_9STRA (Flag-tagged protein kinase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FA88_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.950e-17
Identity = 40/74 (54.05%), Postives = 51/74 (68.92%), Query Frame = 1 
Query:  250 MKDEGRGITGDVGTAQWMAPEVLANLPYNRAVDVYSFGIVCWELLIREVPYEDLSQRQVADEVLDRGLRPVIPQ 471
            +K + R +T + GT QWMAPEVLAN  Y+   D+YSFGI+ WELL RE PYE ++  Q A  VL+R  RP IP+
Sbjct:  164 LKAQARSMTANCGTVQWMAPEVLANRSYDEKADIYSFGIIVWELLTRECPYEGMTAIQCALAVLNRDKRPEIPK 237
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BLAST of mRNA_A-nodosum_M_contig11900.1.1 vs. uniprot
Match: A0A5B7BN35_DAVIN (Putative serine/threonine-protein kinase EDR1-like (Fragment) n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7BN35_DAVIN)

HSP 1 Score: 85.5 bits (210), Expect = 2.640e-17
Identity = 38/74 (51.35%), Postives = 53/74 (71.62%), Query Frame = 1 
Query:  250 MKDEGRGITGDVGTAQWMAPEVLANLPYNRAVDVYSFGIVCWELLIREVPYEDLSQRQVADEVLDRGLRPVIPQ 471
            ++D+   +T + GT +WMAPEV+ + PY+R  DV+SFGIV WELL  ++PYE LS  Q A  V+ +GLRP IP+
Sbjct:   46 VQDQSGVMTAETGTYRWMAPEVIDHKPYDRKADVFSFGIVLWELLTGKLPYEKLSPLQAAIGVVQKGLRPTIPR 119
[Close]
BLAST of mRNA_A-nodosum_M_contig11900.1.1 vs. uniprot
Match: A0A6H5KM77_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM77_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 4.610e-17
Identity = 42/67 (62.69%), Postives = 49/67 (73.13%), Query Frame = 1 
Query:  271 ITGDVGTAQWMAPEVLANLPYNRAVDVYSFGIVCWELLIREVPYEDLSQRQVADEVLDRGLRPVIPQ 471
            +TG+ GT QWMAPEVLA+  Y    DVYSFGIVCWELL R  PY+ +SQ QVA  VL+  LRP IP+
Sbjct: 1199 MTGNCGTVQWMAPEVLASEKYAEPADVYSFGIVCWELLSRACPYDGMSQIQVAVAVLNESLRPNIPE 1265
[Close]
BLAST of mRNA_A-nodosum_M_contig11900.1.1 vs. uniprot
Match: A0A397DFD4_9STRA (Protein kinase domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DFD4_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 6.900e-17
Identity = 38/66 (57.58%), Postives = 45/66 (68.18%), Query Frame = 1 
Query:  271 ITGDVGTAQWMAPEVLANLPYNRAVDVYSFGIVCWELLIREVPYEDLSQRQVADEVLDRGLRPVIP 468
            +TG+ GT QWMAPEVLA   Y    DV+SFG+VCWE + R  PY+ LSQ Q A  VL+  LRP IP
Sbjct:    1 MTGNCGTTQWMAPEVLAAEKYTEKADVFSFGVVCWETVTRACPYDGLSQIQAALGVLNHHLRPTIP 66
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig11900.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B7FRE9_PHATC4.540e-1956.76Predicted protein (Fragment) n=1 Tax=Phaeodactylum... [more]
A0A7S3YBY1_HETAK2.930e-1859.09Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6S8IK00_9STRA5.170e-1855.41Hypothetical protein n=2 Tax=Amphora coffeiformis ... [more]
A0A1Z5JP08_FISSO6.910e-1855.41Sterile alpha motif and leucine zipper containing ... [more]
A0A7S1BD91_9STRA8.510e-1851.35Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S1G4A3_9STRA1.410e-1758.21Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A1E7FA88_9STRA1.950e-1754.05Flag-tagged protein kinase n=1 Tax=Fragilariopsis ... [more]
A0A5B7BN35_DAVIN2.640e-1751.35Putative serine/threonine-protein kinase EDR1-like... [more]
A0A6H5KM77_9PHAE4.610e-1762.69Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A397DFD4_9STRA6.900e-1757.58Protein kinase domain-containing protein n=2 Tax=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig11900contigA-nodosum_M_contig11900:2425..5094 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2850.Phatr8934
PFAMsPkinase_Tyr
Model size657
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons4
Evalue2.31e-22
EggNOG OGsCOG0515@1|root,KOG0192@2759|Eukaryota,2XB49@2836|Bacillariophyta
DescriptionBelongs to the protein kinase superfamily
Cds size225
COG categoryT
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig11900.1.1prot_A-nodosum_M_contig11900.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig11900 2674..4462 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866609.3741817-UTR-A-nodosum_M_contig11900:2424..26731680866609.3741817-UTR-A-nodosum_M_contig11900:2424..2673Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig11900 2425..2673 +
1680866609.4190707-UTR-A-nodosum_M_contig11900:4462..44961680866609.4190707-UTR-A-nodosum_M_contig11900:4462..4496Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig11900 4463..4496 +
1680866609.4316719-UTR-A-nodosum_M_contig11900:4945..50941680866609.4316719-UTR-A-nodosum_M_contig11900:4945..5094Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig11900 4946..5094 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866609.3841639-CDS-A-nodosum_M_contig11900:2673..27211680866609.3841639-CDS-A-nodosum_M_contig11900:2673..2721Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11900 2674..2721 +
1680866609.4000626-CDS-A-nodosum_M_contig11900:3600..37261680866609.4000626-CDS-A-nodosum_M_contig11900:3600..3726Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11900 3601..3726 +
1680866609.4109685-CDS-A-nodosum_M_contig11900:4411..44621680866609.4109685-CDS-A-nodosum_M_contig11900:4411..4462Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11900 4412..4462 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig11900.1.1

>prot_A-nodosum_M_contig11900.1.1 ID=prot_A-nodosum_M_contig11900.1.1|Name=mRNA_A-nodosum_M_contig11900.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=75bp
MKDEGRGITGDVGTAQWMAPEVLANLPYNRAVDVYSFGIVCWELLIREVP
YEDLSQRQVADEVLDRGLRPVIPQ*
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mRNA from alignment at A-nodosum_M_contig11900:2425..5094+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig11900.1.1 ID=mRNA_A-nodosum_M_contig11900.1.1|Name=mRNA_A-nodosum_M_contig11900.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2670bp|location=Sequence derived from alignment at A-nodosum_M_contig11900:2425..5094+ (Ascophyllum nodosum dioecious)
TAATCAAAACGATTCCCAGCTAGTGTGTGTGTCACTCACTAGCTGGGCGT
TGTTTGGTAGCTGTCACGTTTATGGCGTGGCGTACGTGGCTAGCCCGAAA
TCGCAGATTTTTGCGTTGAAAAGCTGATCCACGAGGACGTTCGCGCTCTT
GAGATCTCGTCACGCTCAGGGCCATCGAATCAACGCCCCATCTTATTCTA
TGGGTCACATATAGCTCTACGATGTGTTCTCCTCTCGGCGTATAAGTTCA
TGAAGGACGAAGGTCGCGGGATAACAGGCGACGTCGGTACCGCACAGGTT
TGTCACCCCTACCGTCCCATCACCTCCCACCGCTTGGGCACGAGAAACAC
GAGATAGAGAGGAATATCTGAACGATTCCTTGGGCACACCACAGTCTGTA
GGGTTTTTCCTTTATAAAAATACCTAATAGGCGTATGCTACTTTTATAGC
TACAATATCGCAGTAACGACACTTTTCTTTTAACAGGGCGCCCTCGCCGT
CACGGCGTGGATTATTAAGGTACAAATATACTTCCAGAGAAATCTGAACC
ATGGTGTAAGGCCGGCTTCGCTAGCTAAAGCCTCCTTCGGAACACCTCCT
ATTATGTGGGAATACATACTCTTGCCTAGATCGACTGGTTCCAGCTCCAC
CAGTAGTGATATGTTCTCGACATGAGTACTATTAGCGTGTTGAGAGAATG
CAGACGCTGAAAGATGTCGCCATATCTACCCTCTCGTGTTAAGACCTTGA
ACATAACGACGAAAATAGGAGTATCATGCCATGGCAGAATGGCATCAAAA
GGGGGAAATTTACGATAGCGCTCCTACCTTCACGGTGCAAGATAGAAAAA
CCACATGCGTGAGAGTTCCCTCGAGTAAGCTCCGGTGGCGACAGAAGGCT
CAAGTCATCGTCACACCATGCAATGGCTGCAACAAAATACGTTTAATGAA
TGTTGTGGAGCATAGTCAGCACATTAAAATGCACGATATAATCGTATCGT
ATCATCCCATCGAGGGCCATCGAATGTAGTAGTTTTTTAGTGTATGGTTT
TCCCCTGTAACCCCGCTCATCAAATAGTTTAGACCATGCACACTTTAGTG
CATCGATCTTGATGACGGGTGGTTATGAAACCTATAGCTTCTACGCTATC
TGTGACGGCGTGCGTTCCTGTTTCAGTGGATGGCGCCGGAAGTCCTCGCC
AACCTTCCGTACAATCGGGCTGTGGACGTATACAGTTTTGGGATCGTTTG
CTGGGAGCTTCTTATTCGCGAAGTTCCCTACGAAGACCTGAGCCAACGCC
AGGTGGGACAAACATGCATTGGTTGCTCCGGAATATGAACTCGAAACGCT
TGTGCCGCCCCGTCTAAGCATAAAAATAAATGGCTCTTTGGTGACCATGG
GAGAAAGCCCATGCTCTCCGCTGTAATCAGCATAAACGCGATTCCTTGTC
GTTCGAGCCACGGGTTGTATGGTGGATAGCGGTAGAACGAATCTGTAGCT
AATTGTATTGTTTACACCAAAGGAGACGAAAAATGGGTTCGAATGCCTGA
CTCGTCATGGTCGTCCGCGAACCGATAGCAACTTCGAGTCGACCCACGCC
ATTCAAGTCTATCTGGTTTAGGGGGGAGATATTGCCAGTTTGGTCTTGTA
ATGACCGCTCGTACACTTGCTGCTTTTAACATTCTTTACACTTGCTGCTT
CTAGCGAGTACTTTTAATGATATTATGCTCGGACAGTAGTTAATTAACGA
TCCGCTGCCTGCCGATATGCATCTAGTGAACGAGGGGTGCGGTTGTGTGC
ATAACAAAAACTTGTACCATGCATGATGCCGGAATTTGTATCTTGTCCCC
GCCCCCTGGAGTTTACGTTAGTCGCTGCAGGCTTCAACCTCTTCTCGAAC
GATCTCCTTGGCTGGTCACAAGAAGAGGAATATCTTTAGAATAAAACCAA
CTTTTCCCATACTTGCCTGATTGTGATTCCTTTGCAGGTAGCCGATGAAG
TGTTGGACAGAGGGCTACGACCAGTCATCCCGCAGTGAGTGGTTTCCTCA
ACAATATGCGCTTCTCATCAAGGTAAAATAGACCTTCCTTTATGGGTTGC
GGAGCGGTAGATCACCCTTTCGATAGCGTGTCACCGATAGATTCGACGAA
GTGTGGCATATCTCTGGTATCCTGGGTGCATACAGTACCGGCTCGCTTAT
AAGAAACACAATTTTGGACTGAGGCTCAAAATCGTATCCAGGGCGACGAC
AGCGTGAGGTGTATGCCATAAGAAATTCAAACATACAAATGAGGTGTATG
CAGCGAACGAGCCCAATTTCTTATGGGACCCAACAAGTTGATCCTCAGCT
TCTTATCTCATGCATTCTTACGAGCGGGCCGGTACTGTAGTAATGAAGCT
TATAGAAAATAGTTACTGGTATCTTCTTTCAATTTTACTAATGCGATTTA
CTCACTGCTATTGGATTACTTTTTGACTAGCAACGGCCTTCCCTCTCGTC
CACCCATCTTGCCCTCACCAGATGGCTTGGCGACACGAGGCCGACCAGCG
ACCGTCGTTCTCAGAAGTTATCTCGTTTTTCAACATGCCCGATCCGCCCC
GTGTCTCAGACACGAATGTGTAAGACAATCCCGCCAAGTACGAAAGGAAG
AGGTCGCGTGTTGAGTGTAT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig11900:2425..5094+

>mRNA_A-nodosum_M_contig11900.1.1 ID=mRNA_A-nodosum_M_contig11900.1.1|Name=mRNA_A-nodosum_M_contig11900.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=225bp|location=Sequence derived from alignment at A-nodosum_M_contig11900:2425..5094+ (Ascophyllum nodosum dioecious)
ATGAAGGACGAAGGTCGCGGGATAACAGGCGACGTCGGTACCGCACAGTG
GATGGCGCCGGAAGTCCTCGCCAACCTTCCGTACAATCGGGCTGTGGACG
TATACAGTTTTGGGATCGTTTGCTGGGAGCTTCTTATTCGCGAAGTTCCC
TACGAAGACCTGAGCCAACGCCAGGTAGCCGATGAAGTGTTGGACAGAGG
GCTACGACCAGTCATCCCGCAGTGA
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