mRNA_A-nodosum_M_contig1190.17.2 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1190.17.2
Unique NamemRNA_A-nodosum_M_contig1190.17.2
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1190.17.2 vs. uniprot
Match: A0A6H5L442_9PHAE (Peptidase_S26 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L442_9PHAE)

HSP 1 Score: 395 bits (1015), Expect = 3.100e-124
Identity = 247/470 (52.55%), Postives = 299/470 (63.62%), Query Frame = 2
Query:  860 LRXRRRSGE----RGSKSADVLMMTDERSGGRQLGDILAPEDESGDASSARSSAASGGISIEPPSFLKRLFSVPKNIRRTTAVGDVVVPVIGARDGWGGIRQGLVNRGIFPGVEYRVLEVTT-----------STESGSERS---------------------------------------LPSARDAPEGAFENGDLTFTMRPVYPLVARLER-EWPVRVPAREFPVMLTPFAYNAATAWASLTTSLSVLVVCFVTSQALTLSVIPSRSMEPTLQVGDVVLVEKVSRAAFIRREDIVFFRPPPALREVVASAGGILNARDLFVKRVAALSGDVVSVSADGIVEVESARKTGSVRGSAQPGRGLEGAASVAEVEPSDDEGRGAIHPRISTNLVEEASPRTSSAATVN--SGVLKRIRVAEKRRLPPGTIFVLGDNAEVSMDSRVWGELDDGQIVGHALFRVFPLRAFGLL 2098
            LR RRR G     R +++  + M+ ++R   R LGD+L PED  G A       A G +S+EPP FLKR+FS+PKN+RRT A GDVVVPVIGARDGWGGIRQ   N+GI+PGVEYR+LE++            ST++ S+ +                                       L SARDAP  +F++G L FTMRP+YPLVARLER +WPVRVPAREFPVMLTPF+YNAATAWA+ TTSLS+L V FV SQALTLSVI S SMEPTLQVGDVVLVEKVSR+  ++  DIV+FRPPP L+++V+ AGG L+  DLFVKRVAALSGD V+VSADG V+V +A   G  R      R   G  S A  E     G G      S   V  A   T +   V     VL+RI   +++ LP G++FVLGDN   SMDSRVWG+LD G+IVGHAL RVFP R+FGLL
Sbjct:   64 LRRRRRCGNFHQRRQTRAPALTMLFEKRPEERALGDVLIPEDAPGGAGEGGGDDAIG-VSVEPPGFLKRVFSIPKNVRRTAAAGDVVVPVIGARDGWGGIRQAS-NQGIYPGVEYRILEISVFPTARTPPTGDSTKASSDSAAAVAPYLSSXXXXXXXXXXXXXXXXXXXQPDLDAEPTAVLASARDAPPESFDDGSLVFTMRPIYPLVARLERGDWPVRVPAREFPVMLTPFSYNAATAWAAFTTSLSLLSVGFVLSQALTLSVINSHSMEPTLQVGDVVLVEKVSRSFLVKPNDIVYFRPPPVLQDIVSRAGGTLSPSDLFVKRVAALSGDTVTVSADGSVDVRAAAGGGITRLPKGTNRADNGG-SAAGGESDVILGDGVAGQEGSAAAVAAAKGGTLAEEKVALPDSVLQRITRLDEKVLPSGSVFVLGDNPAASMDSRVWGQLDKGEIVGHALLRVFPPRSFGLL 530          
BLAST of mRNA_A-nodosum_M_contig1190.17.2 vs. uniprot
Match: A0A835YRZ1_9STRA (Mitochondrial inner membrane protease subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRZ1_9STRA)

HSP 1 Score: 202 bits (514), Expect = 1.740e-50
Identity = 135/301 (44.85%), Postives = 157/301 (52.16%), Query Frame = 2
Query: 1181 GVEYRVLEVTTSTESGSERSLPSARDAPEGAFENGDLTFTMRPVYPLVARLEREWPVRVPAREFPVMLTPFAYNAATAWASLTTSLSVLVVCFVTSQALTLSVIPSRSMEPTLQVGDVVLVEKVSRAAFIRREDIVFFRPPPALREVVASAGGI-LNARDLFVKRVAALSGDVVSVSADGIVEVESARKTGSVRGSAQPGRGLEGAASVAEVEPSDDEGRGAIHPRISTNLVEEASPRTSSAATVNSGVLKRIRVAEKRRLPPGTIFVLGDNAEVSMDSRVWGELDDGQIVGHALFRVFPL 2080
            GVEYR L +T          L S  DAP  AFE GDL   +RP+YPL+ RLER WPV V AR+ P+ LT FAYN ATAWA+L                LTLS IPSRSMEP L+ GDVVLVEKVSR A +RR ++VFF PPPALR  VA AGG  L   DLFVKRVAAL+GD V+V+ DG   V  A     VRG+                        G +     + L+   +                           G+ FVLGDN   S+DSRVWG+L    IVG  L RVFPL
Sbjct:    5 GVEYRCLGITCGGAP-----LDSVADAPPNAFEAGDLLLQLRPIYPLIPRLERAWPVTVAARDVPIALTAFAYNVATAWAALXXXXXXXXXXXXXXXTLTLSFIPSRSMEPVLRPGDVVLVEKVSRGALLRRGEVVFFAPPPALRAAVADAGGAPLRGGDLFVKRVAALTGDDVAVARDGETRVRGAL----VRGA------------------------GDLPRAARSRLLLREAXXXXXXXXXXXXXXXXXXXXXXXXXXAGSAFVLGDNPLHSVDSRVWGDLPYSNIVGRPLLRVFPL 272          
BLAST of mRNA_A-nodosum_M_contig1190.17.2 vs. uniprot
Match: A0A0G4EFP7_VITBC (Mitochondrial inner membrane protease subunit n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EFP7_VITBC)

HSP 1 Score: 187 bits (476), Expect = 1.750e-48
Identity = 134/346 (38.73%), Postives = 173/346 (50.00%), Query Frame = 2
Query: 1070 KNIRRTTAVGDVVVPVIGARDGWGGIRQGLVNRGIFPGVEYRVLEVTTSTESGSERSLPSARDAPEGAFENGDLTFTMRPVYPLVARLEREWPVRVPAREFPVMLTPFAYNAATAWASLTTSLSVLVVCFVTSQALTLSVIPSRSMEPTLQVGDVVLVEKVSRAAFIRRE-DIVFFRPPPALREVVASAGGILNARDLFVKRVAALSGDVVSVSADGIVEVESARKTGSVRGSAQPGRGLEGAASVAEVEPSDDE----GRGAIHPRISTNLVEEASPRTSSAATVNSGVLKRIRVAEKRRLPPGTIFVLGDNAEVSMDSRVWGELDDGQIVGHALFRVFPLRAFG 2092
            K++RR    G  +VP+IGAR GW  IR+ +  +G++PGV+YRV  +         R                D   T+RP Y LV +LER+WPV +   E P+ LTP  YN AT  ++L ++  +L V  V SQ  +L  IPS SMEPTL  GDV+LVEKVSR     +  DIV F PP  LR  V  AGG L   DLFVKRVAA  GD V+V                         GL        V P  +E    G  A   R   ++   A  R    A   +G      VA++  L  G ++VLGDN   S+DSR+WGEL + +IVGH + R+FP   FG
Sbjct:  102 KDMRREIREGGDIVPLIGARPGWAAIRENMFRKGVYPGVDYRVERIDVRANGDPIR----------------DAVITVRPRYRLVDKLERQWPVTIAMSEVPIFLTPRMYNTATLISTLLSAAQLLAVALVASQFCSLYYIPSYSMEPTLHKGDVLLVEKVSRLVRPPKNGDIVLFNPPEQLRTFVRQAGGQLAPGDLFVKRVAATQGDRVTVD-----------------------NGLPTINGHTYVYPEPEEPPTIGSDAPPARADGSMQRLAIGR--GFAWPYAGEAPSQWVADECVLGSGAVYVLGDNPVRSVDSRLWGELRESEIVGHPVIRLFPWGRFG 406          
BLAST of mRNA_A-nodosum_M_contig1190.17.2 vs. uniprot
Match: A0A448ZBV4_9STRA (Mitochondrial inner membrane protease subunit n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZBV4_9STRA)

HSP 1 Score: 187 bits (475), Expect = 1.460e-46
Identity = 142/381 (37.27%), Postives = 193/381 (50.66%), Query Frame = 2
Query: 1001 SSAASGGISIEPPSFLKRLFSVPKNIR------------RTTAVGDVVVPVIGARDGWGGIRQGLVNRGIFPGVEYRVLEVTTSTESGSER--SLPSARDAPEGAFENGDLTFTMRPVYPLVARLEREWPVRVPAREFPVMLTPFAYNAATAWASLTTSLSVLVVCFVTSQALTLSVIPSRSMEPTLQVGDVVLVEKVS-RAAFIRRE--DIVFFRPPPALREVVASAGGILNARDLFVKRVAALSGDVVSVSADGIVEVESARKTGSVRGSAQPGRGLEGAASVAEVEPSDDEGRGAIHPRISTNLVEEASPRTSSAATVNSGVLKRIRVAEKRRLPPGTIFVLGDNAEVSMDSRVWGELDDGQIVGHALFRVFPLRAFG 2092
            SS+A   I ++       + S  K+IR             +  VG VVVPV+         R  +  +G +PGVEYR+L +      G ER  S P A              + ++PVYPLVA+LER WPVRV  R+ P + TP  YN  +A+ SL T+ S L V F+ SQA++L  IPS+SM+PTL+VGDV+LV+KVS R  F + E  D+V F PP  L+E+VA  GG L++RDLFVKR+AA  GD V+V  DG V+V                  + G   + E EP                L+E                 K I   E + +    +FV+GD + VS+DSRVWG L+   IVG  + R++PL  FG
Sbjct:  301 SSSADANIEVQEKEPSSPMSSWNKDIRLVEEGNTNEHNTESVRVGKVVVPVLSRLSQ----RPKMFEQGAYPGVEYRILRILD--RDGRERFTSCPGA-------------DYELKPVYPLVAQLERPWPVRVNERDIPKLFTPSMYNLLSAFGSLFTAASGLFVAFLLSQAISLFFIPSKSMDPTLKVGDVLLVDKVSSRTPFRKNEVGDMVLFSPPSRLQEIVAKNGGNLSSRDLFVKRIAASPGDRVTVYKDGKVDVNGQDV-------------VAGRRDLCEAEP--------------LRLIE-----------------KYIEPREDKIIDQKEVFVMGDCSSVSVDSRVWGSLEAENIVGRPIVRIWPLDRFG 618          
BLAST of mRNA_A-nodosum_M_contig1190.17.2 vs. uniprot
Match: B7G479_PHATC (Mitochondrial inner membrane protease subunit n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G479_PHATC)

HSP 1 Score: 178 bits (452), Expect = 1.080e-43
Identity = 140/365 (38.36%), Postives = 188/365 (51.51%), Query Frame = 2
Query: 1046 LKRLFSVP---KNIRRTT----AVGDVVVPVIGARDGWGGIRQGLVNRGIFPGVEYRVLEVTTSTESGSERSLPSARDAPEGAFENGDLTFTMRPVYPLVARLEREWPVRVPAREFPVMLTPFAYNAATAWASLTTSLSVLVVCFVTSQALTLSVIPSRSMEPTLQVGDVVLVEKVSRAAFIRRE-----DIVFFRPPPALRE-VVASAGGILNARDLFVKRVAALSGDVVSVSADGIVEVESARKTGSVRGSAQPGRGLEGAASVAEVEPSDDEGRGAIHPRISTNLVEEASPRTSSAATVNSGVLKRIRVAEKRRLPPGTIFVLGDNAEVSMDSRVWGELDDGQIVGHALFRVFPLRAFGLLP 2101
            ++++ S P    NI  TT     VG +VVPV+         R  +  +G +PGVEYR+L +    +  + R L          +      + ++PVYPLV +LER WPVRV  R+ P +LTP  YN  +A  SL T+L+ L+V FV SQA++L VIPS SM PTL  GDVVLV+K++   +  R      D+VFF PP  L++ VV S G  L  RDLFVKRVAA  GDV++V   G V V  A  T +V            A    E EP           R+    +++ASP     A V              R+ PG + VLGD A VS+DSRVWG L    IVG  + R++P   +G +P
Sbjct:  280 IRKIDSAPPSTNNIATTTNERVRVGTIVVPVLQKL----AQRPRMFQQGAYPGVEYRILRII---DPHTNRDL---------FYSQPGADYELKPVYPLVRQLERPWPVRVNERDIPKLLTPTMYNTVSAVGSLLTALTGLLVAFVLSQAVSLFVIPSLSMAPTLAKGDVVLVDKLTPRFWGPRTNIPVGDVVFFHPPEPLQDMVVRSTGRRLAPRDLFVKRVAAGPGDVLTVDPSGSVRVNGA--TPAV------------ARETCEAEPL----------RLIEAYLKKASPDNPDGANV--------------RIGPGQVAVLGDCASVSIDSRVWGPLPQNDIVGRPVVRLWPPSRWGPVP 590          
BLAST of mRNA_A-nodosum_M_contig1190.17.2 vs. uniprot
Match: A0A1Z5JWA6_FISSO (Mitochondrial inner membrane protease subunit n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JWA6_FISSO)

HSP 1 Score: 157 bits (396), Expect = 5.040e-37
Identity = 119/344 (34.59%), Postives = 177/344 (51.45%), Query Frame = 2
Query: 1094 VGDVVVPVIGARDGWGGIRQGLVNRGIFPGVEYRVLEVTTSTESGSERSLPSARDAPEGAFENGDLTFTMRPVYPLVARLEREWPVRVPAREFPVMLTPFAYNAATAWASLTTSLSVLVVCFVTSQALTLSVIPSRSMEPTLQVGDVVLVEKVSRAAFIRRE---------DIVFFRPPPALREVVASAGGI-LNARDLFVKRVAALSGDVVSVS-ADGIVEVESARKTGSVRGSAQPGRGLEGAASVAEVEPSDDEGRGAIHPRISTNLVEEASPRTSSAATVNSGVLKRIRVAEKRRLPPGTIFVLGDNAEVSMDSRVWGELDDGQIVGHALFRVFPLRAFG 2092
            VG +VVP++ +       R  +  +G +PGVEYR+L +    E+G++             +    + + ++P+YPLV +LER WPVRV  R+ P + TP  YN  +A  SL T+++ L+  F+ SQA+++ VIPSRSMEPTLQVGDV+LV+KV+     +           +I+ F P  +L+++V  +GG  L  R+LFVKRVAA  G  + ++ A G VE++  +              LE      E EP              T L+E                 K +R  ++ ++ P  + VLGD + VS+DSRVWG L    IVG  L RV+PL   G
Sbjct:  213 VGRIVVPILRSL----AERPAMFRQGTYPGVEYRILRII-DPETGADLF-----------YSRPGVDYELKPIYPLVQQLERLWPVRVNERDIPKLYTPAMYNGISAVGSLLTAVTGLLAAFLVSQAISIFVIPSRSMEPTLQVGDVLLVDKVTPRLTNKLNLNKYNDWVGNIILFHPTESLQDIVLKSGGRKLTDRELFVKRVAAGPGSTLKITDASGAVEIDGRKP-------------LERRDFCGE-EP--------------TRLIE-----------------KFLRQGDEFQVGPKQVAVLGDCSSVSIDSRVWGPLPTDNIVGRPLLRVWPLSRVG 495          
BLAST of mRNA_A-nodosum_M_contig1190.17.2 vs. uniprot
Match: A0A1Z5KRR1_FISSO (Mitochondrial inner membrane protease subunit n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KRR1_FISSO)

HSP 1 Score: 152 bits (385), Expect = 1.150e-36
Identity = 119/344 (34.59%), Postives = 175/344 (50.87%), Query Frame = 2
Query: 1094 VGDVVVPVIGARDGWGGIRQGLVNRGIFPGVEYRVLEVTTSTESGSERSLPSARDAPEGAFENGDLTFTMRPVYPLVARLEREWPVRVPAREFPVMLTPFAYNAATAWASLTTSLSVLVVCFVTSQALTLSVIPSRSMEPTLQVGDVVLVEKVSRAAFIRRE---------DIVFFRPPPALREVVASAGGI-LNARDLFVKRVAALSGDVVSVS-ADGIVEVESARKTGSVRGSAQPGRGLEGAASVAEVEPSDDEGRGAIHPRISTNLVEEASPRTSSAATVNSGVLKRIRVAEKRRLPPGTIFVLGDNAEVSMDSRVWGELDDGQIVGHALFRVFPLRAFG 2092
            VG +VVP++         R  +  +G +PGVEYR+L +    E+G++             +    + + ++P+YPLV +LER WPVRV  ++ P + TP  YN  +A  SL T++  L+  F+ SQA+++ VIPSRSMEPTLQVGDV+LV+K++     +            IV FRP  +L+++V  +GG  L  R+LFVKRVAA  G  + ++ A G VE++  +              LE      E EP              T L+E                 K +R  ++ ++ P  + VLGD + VS+DSRVWG L    IVG  L RV+PL   G
Sbjct:   81 VGRIVVPILRNL----AERPAMFRQGTYPGVEYRILRII-DPETGADLF-----------YSRPGVDYELKPIYPLVQQLERLWPVRVNEKDIPRLYTPAMYNGLSAIGSLFTAVMGLLAAFLVSQAISIFVIPSRSMEPTLQVGDVLLVDKLTPRLTNKLNLNKYSEWVGYIVLFRPTESLQDIVLQSGGRKLTDRELFVKRVAAGPGSTLKITDASGAVEIDGRKP-------------LERRDFCGE-EP--------------TRLIE-----------------KFLRQGDEFQVGPKQVAVLGDCSSVSIDSRVWGPLPTDNIVGRPLLRVWPLSRVG 363          
BLAST of mRNA_A-nodosum_M_contig1190.17.2 vs. uniprot
Match: A0A7S0Y0G9_HEMAN (Mitochondrial inner membrane protease subunit n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0Y0G9_HEMAN)

HSP 1 Score: 150 bits (380), Expect = 2.030e-36
Identity = 121/346 (34.97%), Postives = 174/346 (50.29%), Query Frame = 2
Query: 1067 PKNIRRTTAVGDVVVPVIGARDGWGGIRQGLV-NR------GIFPGVEYRVLEVTTSTESGSERSLPSARDAPEGAFENGDLTFTMRPVYPLVARLEREWPVRVPAREFPVMLTPFAYNAATAWASLTTSLSVLVVCFVTSQALTLSVIPSRSMEPTLQVGDVVLVEKVSRA-AFIRREDIVFFRPPPALREVVASAGGILNARDLFVKRVAALSGDVVSV-SADGIVEVESARKTGSVRGSAQPGRGLEGAASVAEVEPSDDEGRGAIHPRISTNLVEEASPRTSSAATVNSGVLKRIRVAEKRRLPPGTIFVLGDNAEVSMDSRVWGELDDGQIVGHALFRVFP 2077
            P++ R    VG V VP   A    GG R GL+ NR      G++PG+EYR++ +    +  ++ +L      PEGA   G++  ++RP+YPL  RLER WPV V + + P  LT   YN+ T   +   S+SV++      +A++   IPS SMEPT+  GD++L EK+S      +R +I+ F PP +L+ VV S GG +  RDLF+KRVAAL GDVV+V +ADG V V   R                    V    P+ DE  G                          G+++     +K ++  G  FVLGD   VS+DSRVWG L D  +    L +++P
Sbjct:   39 PRDTRGELRVGQVFVPTTLAG---GGSRPGLLQNRDRMFAVGVYPGIEYRLMGMR---DIDTKETLFRV---PEGA---GEVEMSVRPIYPLDKRLERPWPVVVSSSDVPCFLTQAMYNSLTLVGTALWSVSVVLFVLFAREAVSFYKIPSASMEPTIHRGDLILAEKLSPLWKTPQRGEILLFTPPDSLKAVVESQGGFVGPRDLFIKRVAALPGDVVTVDTADGSVTVNGER--------------------VQRQGPTCDEPSGGAQ-----------------------GLVR----PQKGKVKSGVSFVLGDCGPVSVDSRVWGTLSDDDVKARPLVKLWP 325          
BLAST of mRNA_A-nodosum_M_contig1190.17.2 vs. uniprot
Match: A0A7S4C1M9_CHRCT (Mitochondrial inner membrane protease subunit n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C1M9_CHRCT)

HSP 1 Score: 150 bits (380), Expect = 4.720e-36
Identity = 123/346 (35.55%), Postives = 159/346 (45.95%), Query Frame = 2
Query: 1097 GDVVVPVIG----ARDGWGGIRQGLVNRGIFPGVEYRVLEVTTSTESGSERSLPSARDAPEGAFENGDLTFTMRPVYPLVARLEREWPVRVPAREFPVMLTPFAYNAATAWASLTTSLSVLVVCFVTSQALTLSVIPSRSMEPTLQVGDVVLVEKVSRA--AFIRREDIVFFRPPPALREVV---ASAGGILNARD---LFVKRVAALSGDVVSVSADGIVEVESARKTGSVRGSAQPGRGLEGAASVAEVEPSDDEGRGAIHPRISTNLVEEASPRTSSAATVNSGVLKRIRVAEKRRLPPGTIFVLGDNAEVSMDSRVWGELDDGQIVGHALFRVFPLRAFGLL 2098
            G +VVP +     +R     +R  +   G++PGV+Y +  +        ER              NG     +RP Y L+ +LER WPVRVP    P  +TP  YNA  A  +L  +L+ L+     S  LTLSVI S SM PT+   DV+LVEKVSR   A +RR D+VFF PP  LRE+V   A+A G+   R    LFVKRV A   DVV V   G V                    L G    A+V+P                               N  +   +++ +   L  G  FVLGDNA+ S+DSR WG LD+  IVG  + RVFPL  FG L
Sbjct:   94 GRIVVPTLARRIRSRKEMKQLRDRMFAEGVYPGVDYIIETI--------ERP------------RNGPAILRVRPEYALIPKLERNWPVRVPVSVSPDWMTPSGYNAQVAIFALGLALTGLLGALAASTVLTLSVITSTSMAPTILPRDVLLVEKVSRRFHAPLRRGDLVFFEPPAELREIVRARAAAAGVAEPRRYGRLFVKRVVAAEDDVVGVDDHGHVT-------------------LNGGDIGADVDP-------------------------------NGPLASLVKMQQTLPLASGKYFVLGDNADSSVDSRCWGGLDEADIVGRPVVRVFPLSRFGPL 369          
BLAST of mRNA_A-nodosum_M_contig1190.17.2 vs. uniprot
Match: A0A7S1CZJ0_CYCTE (Mitochondrial inner membrane protease subunit n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CZJ0_CYCTE)

HSP 1 Score: 147 bits (371), Expect = 4.910e-36
Identity = 99/272 (36.40%), Postives = 138/272 (50.74%), Query Frame = 2
Query: 1295 FTMRPVYPLVARLEREWPVRVPAREFPVMLTPFAYNAATAWASLTTSLSVLVVCFVTSQALTLSVIPSRSMEPTLQVGDVVLVEKVSRAAFIRRE---DIVFFRPPPALREVVASAGGILNARDLFVKRVAALSGDVVSVSADGIVEVESARKTGSVRGSAQPGRGLEGAASVAEVEPSDDEGRGAIHPRISTNLVEEASPRTSSAATVNSGVLKRIRVAEKRRLPPGTIFVLGDNAEVSMDSRVWGELDDGQIVGHALFRVFPLRAFGLLP 2101
            + ++P+YPLV +LER WPV V   E P + T   YN  +A  SL T+   L V +  SQ ++L  IPSRSM+PTL VGDVV+VEKVS   F       D++ F PP  L+E+V S+GG +  RDLFVKRVAA     V+V +DG V ++                 L+    +   EP                                 G+++R        +    +FV+GD + VS+DSRVWG L + +I+G  LFRV+P+  FG +P
Sbjct:   20 YDLKPIYPLVDQLERPWPVTVNEAEIPRLYTVGMYNTVSALGSLFTATFGLGVAYALSQMISLFFIPSRSMDPTLAVGDVVVVEKVSPRIFKSNNHVGDVILFHPPSRLQEIVKSSGGRIGNRDLFVKRVAAEPTQKVTVGSDGKVLIDEME--------------LQEKRDMCSEEPL--------------------------------GLIERYIEPGTTEVQSDEVFVMGDCSSVSIDSRVWGPLPNKEIIGKPLFRVWPIERFGSIP 245          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1190.17.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L442_9PHAE3.100e-12452.55Peptidase_S26 domain-containing protein n=2 Tax=Ec... [more]
A0A835YRZ1_9STRA1.740e-5044.85Mitochondrial inner membrane protease subunit n=1 ... [more]
A0A0G4EFP7_VITBC1.750e-4838.73Mitochondrial inner membrane protease subunit n=1 ... [more]
A0A448ZBV4_9STRA1.460e-4637.27Mitochondrial inner membrane protease subunit n=1 ... [more]
B7G479_PHATC1.080e-4338.36Mitochondrial inner membrane protease subunit n=1 ... [more]
A0A1Z5JWA6_FISSO5.040e-3734.59Mitochondrial inner membrane protease subunit n=1 ... [more]
A0A1Z5KRR1_FISSO1.150e-3634.59Mitochondrial inner membrane protease subunit n=1 ... [more]
A0A7S0Y0G9_HEMAN2.030e-3634.97Mitochondrial inner membrane protease subunit n=2 ... [more]
A0A7S4C1M9_CHRCT4.720e-3635.55Mitochondrial inner membrane protease subunit n=1 ... [more]
A0A7S1CZJ0_CYCTE4.910e-3636.40Mitochondrial inner membrane protease subunit n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1190contigA-nodosum_M_contig1190:177895..181975 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LKT2
PFAMsPeptidase_S24
Model size2720
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue6.52e-113
EggNOG OGs2CZ78@1|root,2S8VM@2759|Eukaryota
DescriptionPeptidase S24-like
Cds size1191
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1190.17.2prot_A-nodosum_M_contig1190.17.2Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1190 178808..181359 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866608.8920217-UTR-A-nodosum_M_contig1190:177894..1788071680866608.8920217-UTR-A-nodosum_M_contig1190:177894..178807Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1190 177895..178807 +
1680866608.9444027-UTR-A-nodosum_M_contig1190:181359..1819751680866608.9444027-UTR-A-nodosum_M_contig1190:181359..181975Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1190 181360..181975 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866608.9036467-CDS-A-nodosum_M_contig1190:178807..1788221680866608.9036467-CDS-A-nodosum_M_contig1190:178807..178822Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1190 178808..178822 +
1680866608.9126773-CDS-A-nodosum_M_contig1190:179321..1795461680866608.9126773-CDS-A-nodosum_M_contig1190:179321..179546Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1190 179322..179546 +
1680866608.925702-CDS-A-nodosum_M_contig1190:179943..1803121680866608.925702-CDS-A-nodosum_M_contig1190:179943..180312Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1190 179944..180312 +
1680866608.9363377-CDS-A-nodosum_M_contig1190:180777..1813591680866608.9363377-CDS-A-nodosum_M_contig1190:180777..181359Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1190 180778..181359 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1190.17.2

>prot_A-nodosum_M_contig1190.17.2 ID=prot_A-nodosum_M_contig1190.17.2|Name=mRNA_A-nodosum_M_contig1190.17.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=397bp
MMTDERSGGRQLGDILAPEDESGDASSARSSAASGGISIEPPSFLKRLFS
VPKNIRRTTAVGDVVVPVIGARDGWGGIRQGLVNRGIFPGVEYRVLEVTT
STESGSERSLPSARDAPEGAFENGDLTFTMRPVYPLVARLEREWPVRVPA
REFPVMLTPFAYNAATAWASLTTSLSVLVVCFVTSQALTLSVIPSRSMEP
TLQVGDVVLVEKVSRAAFIRREDIVFFRPPPALREVVASAGGILNARDLF
VKRVAALSGDVVSVSADGIVEVESARKTGSVRGSAQPGRGLEGAASVAEV
EPSDDEGRGAIHPRISTNLVEEASPRTSSAATVNSGVLKRIRVAEKRRLP
PGTIFVLGDNAEVSMDSRVWGELDDGQIVGHALFRVFPLRAFGLLP*
back to top

mRNA from alignment at A-nodosum_M_contig1190:177895..181975+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1190.17.2 ID=mRNA_A-nodosum_M_contig1190.17.2|Name=mRNA_A-nodosum_M_contig1190.17.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4081bp|location=Sequence derived from alignment at A-nodosum_M_contig1190:177895..181975+ (Ascophyllum nodosum dioecious)
ACAAACAGGATTGGCAACCATACCCAGTCAATCGCCAGCCTCCCGTCGAC GCCATTATTGACAGGTCACCCGCGGGAGAGGCTAGAGGATCTAGATCCTA GATCTAGTATTACAATATCCCTCGGGAATATGCGGGGGTATGGATATGGA GAACTAACTCGTTGTAGTCACTACTGTGTGAAATGTAATGTCAGAAGGCA CGGGTGTCCATGAGCGGAAACGTTCTCGCATTTTTTATTCTTTTCACCGC CACTGATTTTCTTGACAAAGCTGAAATCAAGATACAGGAGACTGTTATCC ACCTTTGGCCGTTTTTCCTTCTTTCTTTTGTTCGCTTTCATCTTAAGACT CCGGAGTAAGTCTTGACGTCCTCGTCCCCGGCTTCTTCCACGCTACTGAG CCAAAACTCGAAATCCTCAACGCATTTACACATCAACAAAAGAAGCCGCG TGCCCCACATGTCCTCGGACAACCGACTTTCCTGCGGCGATAGCGTCCGC TACAAAGAAGTACCAGATACATTGCAAAAGAGACGCGCGTCGGCCAATTG ACTAGGTCGTTTTAGCTCGATGAATTCTCCACCTTGATCGGTGTTCTCCC TGCGGGTAGATTAATTGACTATCAATACGTACTGTGGCCTCCTTAAAACC CACTTTTATCCAACAAAAACTCTAGCGTGTTTTTTCTGGTTGAATTTGCC GCAGTTGACAGAGCCGTTGAGCTTTAGACTCTGCAACAATAGTGGTCATA TCAAACCAACGCGACCGTGCCGCCTCGTTCATTGACAGTCTCGACCGCGT CAAGTCACTGGAGCGCTCGGGGTGAGTCTCTGCGGCGACGTTCCAGCAGA GGCCATTGCTTGCGTCGCAGGAGGCGCAGCGGGGAACGGGGCTCAAAGTC CGCAGACGTTCTGATGATGACCGATGAGGTGTGTAGGTCGGTCCTTTATG TCGGTGCAGTGATGAAAAGGAACTGAAGTACTAAACAGTATATTCCCCAC CAAGAAAAGCATGTCTATCGGAGAGGATTCCGCGTGCTTGGCGTCATAAC ATGGTATGTCCTACCGTAAAAGTGTCTCTTGTAGGGTAGAGCTTCAAGCG TGGCAGCCGCAGAACTTTTTTGTTTCAACTGGATATATGGAGGCTATACA CTCAATTGATTTACTGATTATGGGAAGTCTACCCAATACATTGAAAAAAG CATTTGCCGTAAGCATCTGGCGCCGTGGATTTCGTTGCACCATATACGCC CGCAGCGAGCACAGCGTGAGCAGCAGTCTTACCGAGGACGTTAAAAGCAG GAGGCGTCTTGGTAACCACATCACACCGGGGAGAGTTTCATGCCATTTCG AAGAACTCACACCAACATTCTTATCCTCACCCGTCAACGCAGTATTCGAT ACTGCATTTAATCTTTTTTCCGGGCAGCGTTCCGGAGGGCGACAGCTCGG GGACATCCTCGCACCGGAGGATGAATCAGGAGACGCATCCTCCGCAAGAA GCTCAGCGGCCTCGGGGGGCATCTCGATCGAGCCCCCCAGTTTCCTGAAG AGACTTTTCTCTGTTCCAAAGAACATTCGTAGGACAACGGCGGTGGGCGA CGTCGTGGTACCCGTCATTGGCGCGCGCGACGGGTGGGGAGGGATACGCC AGGCGAGCGCGTTACACATTTTGCCGCCTCGACCGAGTGGTAGCTGCATC GCAGCGAAGAATCGCCAAGAAAAAACGGCAAATGCTTCTCTCCAGGCACA TCGCATTCGGCGCGTCTCTCTCGTGGTGCCAGACACGGGGGGAAATAAAG ACGGCACCTGTTCTTTACAGCAATCAGACGGGCCGGGGTCGTGTCTTGTC TCCGTCAGATTAGAAGGCGGAAAGGCGCTTGCGTAAGATCTCACACCGTA CCTGGTGCCGTGTCACACTCGACAGAGGTGGCACCCTGCTTGCACCATCC CTGCCTCGCCATCTGAAACAGACCGCAAATATGAATCGAGCGTTTTCCCG TCGTGCTCAAAAATCGATCCTCCAAATCACTCTTCTCCGTAAAACGTAGG GTCTCGTGAACCGAGGCATCTTCCCGGGCGTGGAATATCGAGTTCTCGAG GTGACCACCTCGACGGAATCAGGGTCCGAGCGCTCCTTGCCCTCGGCGCG GGACGCGCCGGAGGGCGCATTCGAAAACGGCGATTTGACTTTCACGATGC GTCCCGTCTACCCTCTCGTGGCGAGGCTGGAGCGGGAGTGGCCCGTTCGA GTGCCCGCCCGCGAGTTTCCCGTCATGCTGACGCCGTTCGCCTACAACGC TGCGACAGCGTGGGCGTCGTTGACCACGAGCCTCTCGGTGCTGGTTGTGT GCTTCGTGACGAGCCAGGCACTAACGCTCTCAGTGATCCCGAGCCGCAGC ATGGAGCCCACGCTGCAGGTGGGAAAGGGATGGCGGGGTTGGGGTAGGAA TATATGTATAGGAGGCCGGGGAAGTTCCACGAAGTTTTCGTCCCCTTTGA AACATCGAACTCGGCAGAGACGAGGGCTCACCTTCATCTGTGTGCTCGTA GCAGCCACGATGTTCCTTATCCCAGCCGTGTTATGCCCCGAACCCCCCCA AAATACCACCATTCTTGAACATATTTTGTACCGTGCAAAACGCCATCGGC GCCGCTCAAAACGCGGGAGATCCCTCCCCCTCCCCCTTTCCCCGGTCCCC CTATACCCCCTCCCCCACCCCCCCCCATCCACCAATGATCGTGCACGCGC GCCCACACAGAAGCCGATGTTATTCTGTTCTGTAAGCACGCGTTCGTTAC TGCTCGATTGTGCCCGTCCTCGAACGTCTTCTCTCGAAACTAAACAATGG ATAAAATGATGTAACACTAATAACCCATACAAGGTGGGTGATGTCGTCCT GGTGGAGAAAGTCTCGAGGGCTGCCTTCATCAGGCGGGAAGACATCGTGT TCTTCCGACCTCCCCCGGCGCTGCGGGAGGTCGTCGCCTCGGCGGGTGGC ATCCTCAACGCGCGCGATCTCTTCGTCAAGCGCGTCGCCGCCCTGTCCGG TGACGTCGTTAGCGTCAGCGCCGACGGAATCGTCGAGGTGGAGAGCGCGC GGAAGACGGGGAGCGTGAGAGGATCGGCACAACCGGGTAGGGGACTGGAA GGCGCGGCATCTGTGGCTGAGGTGGAACCATCGGATGACGAGGGGAGGGG TGCGATACATCCACGTATTTCCACCAATCTTGTCGAAGAGGCCTCGCCCC GAACTTCATCCGCCGCCACCGTTAACAGCGGCGTACTGAAGCGAATACGA GTCGCGGAGAAGAGACGCCTGCCGCCGGGCACGATCTTCGTTCTGGGGGA TAACGCGGAGGTTTCTATGGACTCGCGCGTCTGGGGAGAGTTGGACGATG GACAAATCGTGGGGCATGCGCTCTTTAGAGTCTTTCCTCTGAGGGCTTTC GGACTGCTTCCGTGAGAGATATTTAATTTTTAAAAATGCCAGTTTGCGCG GCGAATCATTTGCTGGGATGATTTCGTATTCCTTCGAAAAAATGCGACAG TCGGGTGCTAGTTTTGGGTTGAACCTGGGTGGCTTCAGTTTTGTCCAAGA TTTTCTCACCAAAAAAGGTGGGGTTCAATTTGCTGCCGCTCGAAACTATT TTTGCCCCTCTGTTTTGTGGTGGTTGTTGTGAGAGTTTTGACAACAAATG TGCGCGCTTTTCACGTCAAGTACGCTCCAGGTAAAAGGAAGGACATCCCC CATATATCCTGCTCTGCACTCGTCGCCCGAGAGGTCTACCTCGCATACCC ACTGTTAACAGTGCGGTCAGTCGTGAGTTCCATTCTTGTTGAAAGCAGGA TTTTCGGAAAGCGTGAGTCAAGTAAAATTCAAACATTTTTGGTTGACGAG ATGTTTACAAGAGTGCTGAACTTGCATCGCGATAAAAATCCCAACGGCGA GAACCGGGGAGAGATGGGAAGATTCTTTATCATAGGCAGGATGGCAACGT TGCACTATTTAGGTGGGATTGGTGGTTAACTTAGCACGTTGAGGCCCATC GGTAGTAAAGTGAGACGCCAACAAAAACTAT
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig1190:177895..181975+

>mRNA_A-nodosum_M_contig1190.17.2 ID=mRNA_A-nodosum_M_contig1190.17.2|Name=mRNA_A-nodosum_M_contig1190.17.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=1191bp|location=Sequence derived from alignment at A-nodosum_M_contig1190:177895..181975+ (Ascophyllum nodosum dioecious)
ATGATGACCGATGAGCGTTCCGGAGGGCGACAGCTCGGGGACATCCTCGC
ACCGGAGGATGAATCAGGAGACGCATCCTCCGCAAGAAGCTCAGCGGCCT
CGGGGGGCATCTCGATCGAGCCCCCCAGTTTCCTGAAGAGACTTTTCTCT
GTTCCAAAGAACATTCGTAGGACAACGGCGGTGGGCGACGTCGTGGTACC
CGTCATTGGCGCGCGCGACGGGTGGGGAGGGATACGCCAGGGTCTCGTGA
ACCGAGGCATCTTCCCGGGCGTGGAATATCGAGTTCTCGAGGTGACCACC
TCGACGGAATCAGGGTCCGAGCGCTCCTTGCCCTCGGCGCGGGACGCGCC
GGAGGGCGCATTCGAAAACGGCGATTTGACTTTCACGATGCGTCCCGTCT
ACCCTCTCGTGGCGAGGCTGGAGCGGGAGTGGCCCGTTCGAGTGCCCGCC
CGCGAGTTTCCCGTCATGCTGACGCCGTTCGCCTACAACGCTGCGACAGC
GTGGGCGTCGTTGACCACGAGCCTCTCGGTGCTGGTTGTGTGCTTCGTGA
CGAGCCAGGCACTAACGCTCTCAGTGATCCCGAGCCGCAGCATGGAGCCC
ACGCTGCAGGTGGGTGATGTCGTCCTGGTGGAGAAAGTCTCGAGGGCTGC
CTTCATCAGGCGGGAAGACATCGTGTTCTTCCGACCTCCCCCGGCGCTGC
GGGAGGTCGTCGCCTCGGCGGGTGGCATCCTCAACGCGCGCGATCTCTTC
GTCAAGCGCGTCGCCGCCCTGTCCGGTGACGTCGTTAGCGTCAGCGCCGA
CGGAATCGTCGAGGTGGAGAGCGCGCGGAAGACGGGGAGCGTGAGAGGAT
CGGCACAACCGGGTAGGGGACTGGAAGGCGCGGCATCTGTGGCTGAGGTG
GAACCATCGGATGACGAGGGGAGGGGTGCGATACATCCACGTATTTCCAC
CAATCTTGTCGAAGAGGCCTCGCCCCGAACTTCATCCGCCGCCACCGTTA
ACAGCGGCGTACTGAAGCGAATACGAGTCGCGGAGAAGAGACGCCTGCCG
CCGGGCACGATCTTCGTTCTGGGGGATAACGCGGAGGTTTCTATGGACTC
GCGCGTCTGGGGAGAGTTGGACGATGGACAAATCGTGGGGCATGCGCTCT
TTAGAGTCTTTCCTCTGAGGGCTTTCGGACTGCTTCCGTGA
back to top