mRNA_A-nodosum_M_contig119.83.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig119.83.1
Unique NamemRNA_A-nodosum_M_contig119.83.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig119.83.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig119contigA-nodosum_M_contig119:779898..782379 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LI81
PFAMsGlyco_transf_92,zf-C3HC4,zf-C3HC4_2
Model size2070
Max annot lvl2759|Eukaryota
KEGG koko:K20779
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0000151,GO:0000209,GO:0001775,GO:0002200,GO:0002204,GO:0002208,GO:0002250,GO:0002252,GO:0002263,GO:0002285,GO:0002312,GO:0002366,GO:0002376,GO:0002377,GO:0002381,GO:0002440,GO:0002443,GO:0002449,GO:0002460,GO:0002520,GO:0002562,GO:0003674,GO:0003682,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006282,GO:0006302,GO:0006310,GO:0006325,GO:0006355,GO:0006357,GO:0006464,GO:0006508,GO:0006511,GO:0006513,GO:0006725,GO:0006807,GO:0006950,GO:0006955,GO:0006974,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010212,GO:0010390,GO:0010468,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010629,GO:0016043,GO:0016064,GO:0016444,GO:0016445,GO:0016447,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0016740,GO:0019219,GO:0019222,GO:0019538,GO:0019724,GO:0019787,GO:0019941,GO:0030163,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031491,GO:0031593,GO:0031974,GO:0031981,GO:0032182,GO:0032446,GO:0032501,GO:0032502,GO:0032784,GO:0032785,GO:0032879,GO:0032880,GO:0032991,GO:0033522,GO:0033554,GO:0034243,GO:0034244,GO:0034641,GO:0034644,GO:0035518,GO:0035861,GO:0036211,GO:0036351,GO:0036352,GO:0042113,GO:0042393,GO:0043130,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045190,GO:0045321,GO:0045739,GO:0045892,GO:0045934,GO:0045935,GO:0046483,GO:0046649,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051276,GO:0051603,GO:0051716,GO:0060255,GO:0060341,GO:0065007,GO:0070013,GO:0070530,GO:0070534,GO:0070535,GO:0070647,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090734,GO:0104004,GO:0140030,GO:0140096,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1903827,GO:1990234,GO:1990391,GO:2000112,GO:2000113,GO:2001020,GO:2001022,GO:2001141
Exons2
Evalue1.21e-11
EggNOG OGsCOG2802@1|root,KOG4159@2759|Eukaryota
EC2.3.2.31
Descriptionhistone H2A-K13 ubiquitination
Cds size297
COG categoryI
BRITEko00000,ko01000,ko03400,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866606.672524-UTR-A-nodosum_M_contig119:779897..7815631680866606.672524-UTR-A-nodosum_M_contig119:779897..781563Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig119 779898..781563 -
1680866606.6932082-UTR-A-nodosum_M_contig119:781860..7818871680866606.6932082-UTR-A-nodosum_M_contig119:781860..781887Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig119 781861..781887 -
1680866607.1312845-UTR-A-nodosum_M_contig119:782299..7823791680866607.1312845-UTR-A-nodosum_M_contig119:782299..782379Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig119 782300..782379 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866606.6836739-CDS-A-nodosum_M_contig119:781563..7818601680866606.6836739-CDS-A-nodosum_M_contig119:781563..781860Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig119 781564..781860 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig119.83.1prot_A-nodosum_M_contig119.83.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig119 781564..781860 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig119.83.1

>prot_A-nodosum_M_contig119.83.1 ID=prot_A-nodosum_M_contig119.83.1|Name=mRNA_A-nodosum_M_contig119.83.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=99bp
MPSGALDLSMWLASFLPFRVPEKHRLLESRCTRGRLQACLKCIENMEKFT
KGVRRAHAQVGQPHEAAEAAASVASNAAEAESGATAPGSAAEASLPAV*
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mRNA from alignment at A-nodosum_M_contig119:779898..782379-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig119.83.1 ID=mRNA_A-nodosum_M_contig119.83.1|Name=mRNA_A-nodosum_M_contig119.83.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2482bp|location=Sequence derived from alignment at A-nodosum_M_contig119:779898..782379- (Ascophyllum nodosum dioecious)
CAGGGACGGACCTGGACGAGCTCGAGGAGCTTCATTCGTGCACAAGGAAT
TTGTGTCATGGATTCTTGGCGCCATTCAAAGTGCGTATATAGCCACGCAC
CTGTCTTGCCCAAACTGCGGTGTGCGGATTGCGTGCCCGGCATGTATATA
GATGGGGTGCTGCTTGTTGCTTAACATGAGCAATAGGCGTAAGTTGGTCG
AGGGTTTCCCAGACAGGCGTCATGGAATATTACTCTAGTCACGCCGTGGC
GAGGTCGCTGATCTTCGACCCCCGTTGCGGATTTGTTTTATTAATAATTA
ATATGTAGAGCGTGTCGCTGACTGTCGTCGTGAAGCGCAAGAGTAGATGC
TCCGGTGTGAGCCTTACGCTTCTCATCACCCTGCTCTTCCTAGTTTGTTT
TGACCTCTTGTGAATCACCCACTCGGTTCGAAACCCCACCAGGCGCGACC
CTACCCCCCCTCATACACATTATTCGTTTTACCCCCCGTCAGAGCCAATT
GGTGCAGTCGCACGGGGAAATGCCTTCAGGCGCGTTGGACCTGTCGATGT
GGCTGGCGTCGTTCCTTCCGTTCCGCGTGCCCGAAAAGCACCGTTTGTTG
GAGTCGAGGTGCACACGAGGACGACTCCAAGCATGCCTTAAGTGCATAGA
AAATATGGAGAAGTTCACGAAGGGGGTCCGAAGGGCACACGCGCAAGTGG
GACAACCACATGAGGCGGCGGAAGCGGCAGCATCGGTCGCTTCCAACGCA
GCCGAAGCAGAATCTGGGGCGACGGCGCCTGGATCCGCAGCGGAAGCGAG
CCTTCCAGCAGTATGATGGCAGAAAAATGAAGATAGCAAACTCTGTCGAC
AGCTTCTAGAGCCTCTCGCCCATCGATTCGCCTGTCGAAGCGAAATCCGC
GCTCCCGCAGCAGACGAATTTCACGCCGGGCATTTTCTCTAAAGTTGTAG
TGGGTACCGTGTGAAAGCTTCACCAACTGTTGGATGACGAGTGTGCGCTT
TCAAGTCCAAGAAAAAGTCCATTTTGGACGTCGTGGGCTTCGTCTTGGCG
GCAGAGTGCTGTTGAGCGGATCGGTGTGAAGGCGTTCTAATGACTCTCAC
GCTGTTCAGCGGAAGAGCTTATAGAGGAGAGTCAAGATTTCTACGCCTGG
ACATGTAGCGGATGCGAATCGTAATAAAGGGTGAGGGGACCGTGGAACTA
CAAGAAAGATCCACGTGTACCTCTTCAGACCCTGACCTTCGCTTCGGATA
CAGCTATACACTTATACTTAATTGGTGTACAGGATGGATTTACTTTGTGA
AGTGTGGTTGGTTTCATGCGCACTCTACAACCTCGGGATATGATCGGTTG
GCCGGTGGTCCTTGCTTTCCAATTATTTTCCATTCGCGATGACTTTCCCT
CCTTTTTTTCACTGTTGTGTTATAAATAGCTAAACTAAGCACTGCCGGAG
GGGGAAATTCTTCATACGAGCGTCGTAGTATCCTGTACTCGAAGCTGTTG
GGGAATGGGTAACTAATACGATGGGACTTAACAAGGGATTAGAGTTGTTC
GTGAGGTTGCTGTTCGATCCTCGATGCGCGCAGCACCTACAGGGAGCGTG
TGTAGCACTCTGGTTAATTATGCCTGCAAGTGGTGAGGCCCACGGTGTTT
GGTTTGTATTCGCTGTCTGTTCTGTCAATCCTCTGTATCATATAAGTGTC
GTGTATACCACATTCATTATTTTTGCCGTGTTTCTTGTATAGGTGTATTG
CACGATGTATAGCTTTCGCCGGTTCAATGGCGCCGCCCGCGCATTATTTC
GGCGCGATTTTTAGAGTCGAGACACGCCTGGGGAGTTTTTTCCGCCCTCC
TGTGGCTCTCTGAAAGATTCGCGCCTGTTTTGTAGCTAGAAGATGGGTGA
GTCTCTTCTGGACATGCAGTAGACGTGCATTTGTCGGTGGGGTAAGAAAG
AGCGAGAGCGCAGACGAGTGAAAAAAAAAGTCGTTGATATTACAGAGAGA
GAAATCAGAAGAGGTGAAGAGGCAGCCCGGGGTCCTTGGCGGAAAAAGAG
TACGGGAGCGGCTGTGCGCACACGGCGAGTAATCGTCTGATGTTGAAGAT
CAGTATGTGGCTGCGGAGTTGAAATTTGTATGGAGAGCCTTCGCCCGCTT
GCACTTTCCATGCCGTGTAGAATCGATACAGTATTAATACAGTAGTATAT
CTGGACGAGGGTGGTGTGGCCCCAAAATGCACAGATCAACATAGATTAAA
AAAAGAGTGTCAGCATACCCGACTGTGGTATAGACTATACTAGGTACAGT
AGATACGAAGTGGTACGAGACCTTCAACCATTCTTTCCTTTGGGCTACAT
ACAGTTACACAAATACAGTAGTACCGGTATCTGATAATATTATATAGTAT
GCTTTTCTTGAGAAAATGTTTGTGACTCCAAAATGCGAGTCAACGAAGTT
AACATGTGACCACACAGACGAATAGCCTCAAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig119:779898..782379-

>mRNA_A-nodosum_M_contig119.83.1 ID=mRNA_A-nodosum_M_contig119.83.1|Name=mRNA_A-nodosum_M_contig119.83.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=297bp|location=Sequence derived from alignment at A-nodosum_M_contig119:779898..782379- (Ascophyllum nodosum dioecious)
ATGCCTTCAGGCGCGTTGGACCTGTCGATGTGGCTGGCGTCGTTCCTTCC
GTTCCGCGTGCCCGAAAAGCACCGTTTGTTGGAGTCGAGGTGCACACGAG
GACGACTCCAAGCATGCCTTAAGTGCATAGAAAATATGGAGAAGTTCACG
AAGGGGGTCCGAAGGGCACACGCGCAAGTGGGACAACCACATGAGGCGGC
GGAAGCGGCAGCATCGGTCGCTTCCAACGCAGCCGAAGCAGAATCTGGGG
CGACGGCGCCTGGATCCGCAGCGGAAGCGAGCCTTCCAGCAGTATGA
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