mRNA_A-nodosum_M_contig119.6.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig119.6.1
Unique NamemRNA_A-nodosum_M_contig119.6.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig119.6.1 vs. uniprot
Match: A0A6H5JDE1_9PHAE (MFS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JDE1_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 1.210e-27
Identity = 63/105 (60.00%), Postives = 76/105 (72.38%), Query Frame = 2 
Query:  389 SPVSFFDLFSDSRTPTREKVPSIVKYVITPELYSTKYRVVGLGSASVWTRIGGMVAPIMAEVLFDR-SPILPLAAFCPAMIICGIFAGFIPVETAGRKLDDDSWD 700
            +P S   LF  +       +P  VKYV+TPE+YSTKYR VGLGS SV TR+GG++AP++AEVL+D   P+ PL  F P MII GI AG IPVETAGR+LDDDSWD
Sbjct:  355 APASILTLFITT-------IPGTVKYVLTPEIYSTKYRTVGLGSTSVVTRLGGLLAPVLAEVLYDSWGPVAPLLVFGPIMIITGIAAGMIPVETAGRQLDDDSWD 452
[Close]
BLAST of mRNA_A-nodosum_M_contig119.6.1 vs. uniprot
Match: A0A6H5JL66_9PHAE (MFS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL66_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 1.470e-27
Identity = 61/86 (70.93%), Postives = 72/86 (83.72%), Query Frame = 2 
Query:  446 VPSIVKYVITPELYSTKYRVVGLGSASVWTRIGGMVAPIMAEVLFDR-SPILPLAAFCPAMIICGIFAGFIPVETAGRKLDDDSWD 700
            VP+ VKYV+TPELYSTKYR VGLGS+SV TR+GG++AP++AEVL+D   P+ PL  F P MII GI AG IPVETAGR+LDDDSWD
Sbjct:  453 VPATVKYVMTPELYSTKYRAVGLGSSSVATRLGGLLAPVLAEVLYDGWGPVAPLLVFGPIMIITGIAAGMIPVETAGRQLDDDSWD 538
[Close]
BLAST of mRNA_A-nodosum_M_contig119.6.1 vs. uniprot
Match: A0A6H5JUA1_9PHAE (MFS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JUA1_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 9.740e-27
Identity = 58/86 (67.44%), Postives = 71/86 (82.56%), Query Frame = 2 
Query:  446 VPSIVKYVITPELYSTKYRVVGLGSASVWTRIGGMVAPIMAEVLFDRS-PILPLAAFCPAMIICGIFAGFIPVETAGRKLDDDSWD 700
            +P IV YV+TPELY+TKYR VGLG+AS  TR+GG++AP++AE+L+DR  P+ PL  F P MII GI AG IPVETAGR+LDDDSWD
Sbjct:  388 IPGIVIYVLTPELYATKYRAVGLGAASCVTRLGGLIAPMLAELLYDRGGPVAPLLVFGPIMIITGIAAGMIPVETAGRELDDDSWD 473
[Close]
BLAST of mRNA_A-nodosum_M_contig119.6.1 vs. uniprot
Match: D7FV27_ECTSI (Major facilitator transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV27_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 1.500e-16
Identity = 46/73 (63.01%), Postives = 56/73 (76.71%), Query Frame = 2 
Query:  446 VPSIVKYVITPELYSTKYRVVGLGSASVWTRIGGMVAPIMAEVLFDR-SPILPLAAFCPAMIICGIFAGFIPV 661
            +P  VKYV+TPELYSTKYR VGLGS+SV TR+GG++AP++AEVL+D   P+ PL  F P MII GI AG   V
Sbjct:  359 IPVTVKYVLTPELYSTKYRAVGLGSSSVVTRLGGLLAPVLAEVLYDHWGPVAPLLVFGPIMIITGIAAGMFRV 431
[Close]
BLAST of mRNA_A-nodosum_M_contig119.6.1 vs. uniprot
Match: A0A1A8FVJ7_9TELE (SVOP-like n=1 Tax=Nothobranchius korthausae TaxID=1143690 RepID=A0A1A8FVJ7_9TELE)

HSP 1 Score: 72.4 bits (176), Expect = 5.280e-12
Identity = 35/79 (44.30%), Postives = 50/79 (63.29%), Query Frame = 2 
Query:  458 VKYVITPELYSTKYRVVGLGSASVWTRIGGMVAPIMAEVLFDRSPILPLAAFCPAMIICGIFAGFIPVETAGRKLDDDS 694
            V Y+ T E+Y T  R +G+G  + ++RIGGM+AP MA+VL  RS IL L  F  A ++C +    +P+ET GR L  +S
Sbjct:   21 VVYIYTAEVYPTVARSLGMGFCTSFSRIGGMIAPFMAQVLMSRSVILALTPFAVACVLCALGNFLLPIETRGRALLQNS 99
[Close]
BLAST of mRNA_A-nodosum_M_contig119.6.1 vs. uniprot
Match: SVOPL_DANRE (Putative transporter SVOPL n=5 Tax=Danio rerio TaxID=7955 RepID=SVOPL_DANRE)

HSP 1 Score: 78.2 bits (191), Expect = 1.210e-11
Identity = 37/79 (46.84%), Postives = 52/79 (65.82%), Query Frame = 2 
Query:  458 VKYVITPELYSTKYRVVGLGSASVWTRIGGMVAPIMAEVLFDRSPILPLAAFCPAMIICGIFAGFIPVETAGRKLDDDS 694
            V Y+ T E+Y T  R +G+G  + ++RIGGM+AP +A+VL  +S IL L+ F  A IIC I   F+P+ET GR L  D+
Sbjct:  428 VVYIYTAEVYPTSVRSIGMGFCTSFSRIGGMIAPFIAQVLMSKSVILALSPFATACIICAIGVFFLPIETRGRALLQDA 506
[Close]
BLAST of mRNA_A-nodosum_M_contig119.6.1 vs. uniprot
Match: A0A8C2G7Z6_CYPCA (SVOP-like n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C2G7Z6_CYPCA)

HSP 1 Score: 77.4 bits (189), Expect = 1.370e-11
Identity = 34/79 (43.04%), Postives = 52/79 (65.82%), Query Frame = 2 
Query:  458 VKYVITPELYSTKYRVVGLGSASVWTRIGGMVAPIMAEVLFDRSPILPLAAFCPAMIICGIFAGFIPVETAGRKLDDDS 694
            V Y+ T E+Y T  R +G+G  + ++R+GGM+AP +A+VL  +S IL L+ F  A +IC +   F+P+ET GR L  D+
Sbjct:  322 VVYIYTAEVYPTSVRSIGMGFCTSFSRVGGMIAPFIAQVLMSKSVILALSPFAIACVICAVGVAFLPIETRGRALLQDA 400
[Close]
BLAST of mRNA_A-nodosum_M_contig119.6.1 vs. uniprot
Match: UPI001955699B (putative transporter SVOPL n=1 Tax=Pimephales promelas TaxID=90988 RepID=UPI001955699B)

HSP 1 Score: 77.4 bits (189), Expect = 2.150e-11
Identity = 36/75 (48.00%), Postives = 50/75 (66.67%), Query Frame = 2 
Query:  458 VKYVITPELYSTKYRVVGLGSASVWTRIGGMVAPIMAEVLFDRSPILPLAAFCPAMIICGIFAGFIPVETAGRKL 682
            V Y+ T E+Y T  R +G+G  + ++RIGGM+AP +A+VL  RS IL L+ F  A +IC I   F+P+ET GR L
Sbjct:  431 VVYIYTAEVYPTSVRSIGMGFCTSFSRIGGMIAPFIAQVLMSRSVILALSPFATACVICAIGVVFMPIETRGRAL 505
[Close]
BLAST of mRNA_A-nodosum_M_contig119.6.1 vs. uniprot
Match: A0A671RUA9_9TELE (Putative transporter SVOPL n=2 Tax=Sinocyclocheilus anshuiensis TaxID=1608454 RepID=A0A671RUA9_9TELE)

HSP 1 Score: 76.6 bits (187), Expect = 3.660e-11
Identity = 33/75 (44.00%), Postives = 50/75 (66.67%), Query Frame = 2 
Query:  458 VKYVITPELYSTKYRVVGLGSASVWTRIGGMVAPIMAEVLFDRSPILPLAAFCPAMIICGIFAGFIPVETAGRKL 682
            V Y+ T E+Y T  R +G+G  + ++R+GGM+AP +A+VL  +S IL L+ F  A +IC +   F+P+ET GR L
Sbjct:  415 VVYIYTAEVYPTAVRSIGMGFCTSFSRVGGMIAPFIAQVLMSKSVILALSPFATACVICAVGVAFLPIETRGRAL 489
[Close]
BLAST of mRNA_A-nodosum_M_contig119.6.1 vs. uniprot
Match: A0A553NGZ2_9TELE (MFS domain-containing protein n=1 Tax=Danionella translucida TaxID=623744 RepID=A0A553NGZ2_9TELE)

HSP 1 Score: 75.9 bits (185), Expect = 6.520e-11
Identity = 35/78 (44.87%), Postives = 51/78 (65.38%), Query Frame = 2 
Query:  458 VKYVITPELYSTKYRVVGLGSASVWTRIGGMVAPIMAEVLFDRSPILPLAAFCPAMIICGIFAGFIPVETAGRKLDDD 691
            V Y+ T E+Y T  R +G+G  + ++RIGGM+AP +A+VL  +S IL L+ F  A ++C I   F+P+ET GR L  D
Sbjct:  423 VVYIYTAEVYPTSVRSIGMGFCTSFSRIGGMIAPFVAQVLMSKSVILALSPFATACLVCTIGVVFLPIETRGRALLQD 500
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig119.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JDE1_9PHAE1.210e-2760.00MFS domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6H5JL66_9PHAE1.470e-2770.93MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JUA1_9PHAE9.740e-2767.44MFS domain-containing protein n=2 Tax=Ectocarpus T... [more]
D7FV27_ECTSI1.500e-1663.01Major facilitator transporter n=1 Tax=Ectocarpus s... [more]
A0A1A8FVJ7_9TELE5.280e-1244.30SVOP-like n=1 Tax=Nothobranchius korthausae TaxID=... [more]
SVOPL_DANRE1.210e-1146.84Putative transporter SVOPL n=5 Tax=Danio rerio Tax... [more]
A0A8C2G7Z6_CYPCA1.370e-1143.04SVOP-like n=1 Tax=Cyprinus carpio TaxID=7962 RepID... [more]
UPI001955699B2.150e-1148.00putative transporter SVOPL n=1 Tax=Pimephales prom... [more]
A0A671RUA9_9TELE3.660e-1144.00Putative transporter SVOPL n=2 Tax=Sinocyclocheilu... [more]
A0A553NGZ2_9TELE6.520e-1144.87MFS domain-containing protein n=1 Tax=Danionella t... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig119contigA-nodosum_M_contig119:100150..102835 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FV28
PFAMsMFS_1,Sugar_tr
Model size1604
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue5.66e-31
EggNOG OGsKOG0253@1|root,KOG0253@2759|Eukaryota
DescriptionN-methylnicotinate transmembrane transporter activity
Cds size594
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866603.0548716-UTR-A-nodosum_M_contig119:100149..1003181680866603.0548716-UTR-A-nodosum_M_contig119:100149..100318Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig119 100150..100318 +
1680866603.0970263-UTR-A-nodosum_M_contig119:101994..1028351680866603.0970263-UTR-A-nodosum_M_contig119:101994..102835Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig119 101995..102835 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866603.0666542-CDS-A-nodosum_M_contig119:100318..1006941680866603.0666542-CDS-A-nodosum_M_contig119:100318..100694Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig119 100319..100694 +
1680866603.077135-CDS-A-nodosum_M_contig119:101252..1013541680866603.077135-CDS-A-nodosum_M_contig119:101252..101354Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig119 101253..101354 +
1680866603.0854592-CDS-A-nodosum_M_contig119:101878..1019941680866603.0854592-CDS-A-nodosum_M_contig119:101878..101994Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig119 101879..101994 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig119.6.1prot_A-nodosum_M_contig119.6.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig119 100319..101994 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig119.6.1

>prot_A-nodosum_M_contig119.6.1 ID=prot_A-nodosum_M_contig119.6.1|Name=mRNA_A-nodosum_M_contig119.6.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=198bp
MRLLYGTLRWEIPVVVAKNYRGPICRSPPLHRDGHKNLKDGKPAREYRTR
YQDDSSHGFGTSGRPPRCLLSRPSPVSFFDLFSDSRTPTREKVPSIVKYV
ITPELYSTKYRVVGLGSASVWTRIGGMVAPIMAEVLFDRSPILPLAAFCP
AMIICGIFAGFIPVETAGRKLDDDSWDCNSFIPANDRTPAAGVANGR*
back to top

mRNA from alignment at A-nodosum_M_contig119:100150..102835+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig119.6.1 ID=mRNA_A-nodosum_M_contig119.6.1|Name=mRNA_A-nodosum_M_contig119.6.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2686bp|location=Sequence derived from alignment at A-nodosum_M_contig119:100150..102835+ (Ascophyllum nodosum dioecious)
GTTGCACTTTCGCATTCCTGCCTCGCAGCGGTGAGTTGTTTTCGCGCGCG
CAGAGCCAAGGATTTGGACCGAGGGTACCTCGTGAATACCACCCCGTCAT
CACTCTTTCTAATATAATATAACCGCATCTTTGGCCCCGGCTGCTGCGCA
GGATTTTTTTCCTGGCATCATGCGCCTCCTATACGGCACTCTTCGTTGGG
AGATCCCAGTAGTTGTGGCCAAAAATTATCGCGGACCCATCTGTCGCTCC
CCTCCTCTTCATCGTGATGGCCACAAAAACCTCAAGGATGGCAAACCCGC
CCGAGAGTATCGTACCCGTTATCAGGATGATAGTTCACATGGTTTTGGGA
CATCTGGTCGACCCCCGCGATGCTTGCTTTCCCGCCCCTCTCCCGTCTCT
TTTTTTGATCTCTTCTCTGATTCTCGCACACCGACACGCGAAAAGGTTCC
GAGCATCGTCAAATATGTCATCACCCCTGAGCTTTACTCCACAAAGTATC
GCGTCGTTGGCCTGGGAAGCGCCAGCGTTTGGACGCGGATCGGAGGTGAG
CGCCCCGGCCGCCTTTTTTAATTATTAACGCCCGAGTGGTCTAATAAGTA
ACCTGCACACCTGCTAGTGTGGAAGTCGTGAGTTCGATTCTCGTCAAAGG
AAGATTTGTGTTCTTTCTTCCGTACCGGAAAGCGTGAGGACGTGAGTATG
TAAAATTCAACCATTGGTTGACGAGTTGTAAGAGTGCTGAACTTGCATCG
CGATAGAAATTCGTAAGACGTGAATCGAAGAAAGATGGGAAGATCCTTAG
TGACCACAGGCAGGATAGTCATGATGAGGTCCGTCGGCTATGAGTGAGAT
GAGAAGAAAATATTATATAGTTCCTATTGTGCTCCGTTGCCCCAAGAAAT
AGGGTTCGCAGCCCCAACATCCGCTTTTCGACTTCAGCTCTCAGTGCACA
ACGTGATTGACTTGCCAGGTAGCGAAATAGGTTGTCCTGAAAATAAAGCC
CATTTGCCATTGCCTCCCTCAAAACTGGCGAGGTGAATGGTACTCCTGTA
TACTGTATACTGTATACTGTTGTTGTGTGTTCTCTCGCATCTCTTGTTGA
AAGGCATGGTCGCGCCCATCATGGCCGAGGTCTTGTTCGACAGGAGCCCG
ATCCTGCCGCTGGCGGCGTTCTGTCCGGCGATGATCATTTGCGGAATTTT
CGCGGGTGAACGAAAAGTTTGACTCCTCACGTTTTTTAAAACTCGGGAGG
CTTTGCTGCAGCGCCCTCACAACAAGGGAGGAACAAAATCTTTGAATCTA
CACTTTTATGGCAGTACATACGTACTGTACTAACGTAAAATTTTGTTCAT
TTTTGGTCCCAATATATTAAACTATTTATGGTGATAATTATACTGTATGC
ATGCGTACCAGTATTGGGCCGTATTTCTCCTCGATCGTTGAACACGCCTT
CTCATCTCAGCGTTTCGCCGGGTCGCTAACGGGAGCGAGGCTTCGGTTGT
CTAACGCCGTTGAGCCGCTCGAAATATGACACGGTTGATACGGTTGACGG
CTCGGGTAAAAGGGAGATTGGACTATTTCCACCGCTCCCCGGCCCTGTCA
AGTCTCGCAGGGGAGTCGTACCGGGCATGAGATAGGAGCAGATACTTCAT
AGGAATGGATGTGTCTGTCGACGCACGCCGGCGATCTGCGCGGCCCTTGA
CCTCTCGTCTCGCCGCCTTGCACGGTCAGGCTTTATACCGGTGGAGACGG
CTGGCCGGAAGCTGGATGACGACAGCTGGGATTGTAACAGCTTTATTCCG
GCGAACGATAGAACCCCCGCCGCTGGCGTTGCCAACGGAAGGTAACGGTC
GCGAGCCAGGGCTAGACGTTGAACCGTTGCAAGCGGCAGAGGCCCTTGAT
GTTTTTACCAAAGGTTAGTTCCATTCCAATTTGGCGTGTTCGGCCGACAG
CGGCGTGGTAAATCTAAATTCCTTCGTGACACAAGCTCTTGAGAGATCGA
GTTGAGCCCGCGCCGTATTTTTCTCTTATTTTATTTGGATAACATACTGT
ATAACCTCTGTAGCAATGCTGTTAAGCTGGCAAATATGGTAAGATACAAT
GATTAGAACGGTAGAGCCCCTTTAGGAAGGATTCGGCGCGATGGGGGCGT
TCGTTTTACCCGGGTACGTGCGTTCGCATGACGAACGTACCGACATTTTG
GACTGGAAACTCTTTGAAAGGACTATAATTACTTGATTTATGTAACAAGT
GAGATCCATAAACAAGTAACTGTATGCGAATGCATGAAGACGTGTCGTTC
GTTCTACACTGGTCCGGAGAGTGCGTACGAGCAAAGTTCGATCAACAGTA
GGACAAGCCGATACTTGGTCGTTGATTCCTGTCTTGCCTCGCGCGTGTGG
CGCATCATTTGATCATCTGTGATACTATATACGGTAAAAATTGTACCTAG
CGAGCTTCGAACAGGGAATATCTTCATTACAGTATGCAGGTATCACATTT
GTTTGTGCATTCGGTGTACAGTACACTATTTATCAATACAGTCAGTAGTG
TTGCTTTTGTTCGATTCGAGCAGTCTTGCCGTTTTGTCATACGTACAGTA
CTATAGTAGCCATGAATGTGGTCAGTAATTTTAATGATTGCGGGATTTTT
CTCACTGAAAAACTAAAAAATGAAGATAAAAATGCC
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig119:100150..102835+

>mRNA_A-nodosum_M_contig119.6.1 ID=mRNA_A-nodosum_M_contig119.6.1|Name=mRNA_A-nodosum_M_contig119.6.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at A-nodosum_M_contig119:100150..102835+ (Ascophyllum nodosum dioecious)
ATGCGCCTCCTATACGGCACTCTTCGTTGGGAGATCCCAGTAGTTGTGGC
CAAAAATTATCGCGGACCCATCTGTCGCTCCCCTCCTCTTCATCGTGATG
GCCACAAAAACCTCAAGGATGGCAAACCCGCCCGAGAGTATCGTACCCGT
TATCAGGATGATAGTTCACATGGTTTTGGGACATCTGGTCGACCCCCGCG
ATGCTTGCTTTCCCGCCCCTCTCCCGTCTCTTTTTTTGATCTCTTCTCTG
ATTCTCGCACACCGACACGCGAAAAGGTTCCGAGCATCGTCAAATATGTC
ATCACCCCTGAGCTTTACTCCACAAAGTATCGCGTCGTTGGCCTGGGAAG
CGCCAGCGTTTGGACGCGGATCGGAGGCATGGTCGCGCCCATCATGGCCG
AGGTCTTGTTCGACAGGAGCCCGATCCTGCCGCTGGCGGCGTTCTGTCCG
GCGATGATCATTTGCGGAATTTTCGCGGGCTTTATACCGGTGGAGACGGC
TGGCCGGAAGCTGGATGACGACAGCTGGGATTGTAACAGCTTTATTCCGG
CGAACGATAGAACCCCCGCCGCTGGCGTTGCCAACGGAAGGTAA
back to top