mRNA_A-nodosum_M_contig119.38.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig119.38.1
Unique NamemRNA_A-nodosum_M_contig119.38.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig119.38.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig119contigA-nodosum_M_contig119:362076..363983 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size380
Hectar predicted targeting categoryother localisation
Exons2
Cds size261
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866602.4358273-UTR-A-nodosum_M_contig119:362075..3621941680866602.4358273-UTR-A-nodosum_M_contig119:362075..362194Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig119 362076..362194 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866602.4484804-CDS-A-nodosum_M_contig119:362194..3623981680866602.4484804-CDS-A-nodosum_M_contig119:362194..362398Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig119 362195..362398 +
1680866602.4605262-CDS-A-nodosum_M_contig119:363926..3639831680866602.4605262-CDS-A-nodosum_M_contig119:363926..363983Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig119 363927..363983 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig119.38.1prot_A-nodosum_M_contig119.38.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig119 362195..363983 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig119.38.1

>prot_A-nodosum_M_contig119.38.1 ID=prot_A-nodosum_M_contig119.38.1|Name=mRNA_A-nodosum_M_contig119.38.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=87bp
MTALQYTGGPKRVSLPGREAVLGSASRAGQLHPRVHWWLCTCPTSFSENL
RSAVQRATGACNLHQLWRGAYPAYMSFCWMANTENM*
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mRNA from alignment at A-nodosum_M_contig119:362076..363983+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig119.38.1 ID=mRNA_A-nodosum_M_contig119.38.1|Name=mRNA_A-nodosum_M_contig119.38.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1908bp|location=Sequence derived from alignment at A-nodosum_M_contig119:362076..363983+ (Ascophyllum nodosum dioecious)
GATTTGCTAGAGTAGAGTAGTTTTAACAGAGGTGAAAAGGTCGACAACCA
TCCACGAAATAACAGTCAAGACAGAAGGCGTAGTCCAACAGAAAGTCTAG
CTGCCTTCCTTGCAGTGCCATGACTGCATTGCAGTATACAGGCGGCCCGA
AACGAGTGTCTCTGCCGGGAAGAGAAGCTGTATTGGGAAGCGCTTCGCGC
GCGGGGCAACTACACCCGCGCGTCCATTGGTGGCTTTGCACGTGCCCAAC
CTCTTTCTCAGAAAACCTGCGAAGCGCTGTCCAGAGAGCTACAGGGGCGT
GTAACTTGCATCAGCTCTGGCGGGTAAGGGCCGTATCACGTACGTATTTA
TGTACGGTCATCACATATAGCAGATTATGGATCGACCGGGTAAGGTTGCC
AATCCTGCTAGTGGTCAGCTGAACAGGAAAAATGAATATTCCCGTGTCCC
CGTTCGCGCCTGAGAAGTTGGTCTCGCGAGACGGGTTCAGCCATCCTGTC
CCGCGTCAGCCTGCTCATTATCCATAATCAATGGATTCATCCCTAAGAGA
GCAAGGGAAAAGACTGAATCAAATCTTTATTATCATATCGCTGCCGCCCT
CCAATTGTACTCGATGGTAGCTGCCTTCCCCCACTTGGTTAGCTCGAAGG
ACCAGTCTTCGGTCTTTGATGGCACAACACGGCAAATAAGCGTACGCGGA
AACTCCACAACGGCAACGATTGTGCTGATAGAACTTCCATGAAAAAATCA
GCTTTcCCCCCCCCCCCGCCAAAAAAAACGCGCGAAAACTCCATTAAACT
CCCTTGTATTTCTCTAGGGGATATTTGTAGGGGGCTGCTCTCCGGACACA
CCAAACAAGGAGGGAGGGGGGGTGGGGATTCTCGTTCACGCCTGCGTGTG
TAGATCTATCGATCATTTGTTTTAAATGAGAAAAAACAAAACACAAACGT
ACTCTTTCTTGTCTGGCAAAAAATACCATATGCGCTGCCGTATATATATA
TGACATAGAGAGAACACCTGACCCGCACACTCCTCCTAACGTTCAACACC
TGTACGATAGATAACACACAAGGCTAAACAAATCCGAGTCATTTTTGGGT
GCAAGGCGAAAAAAACGCAGGGTACCCGAGGATAAATGACGCGATAGAGC
TATAGTGACGCCAACTTACACAATCACCTCACCGCAGCAAGAAAGTTCTT
GCAAGTTACGAGTAATAATTTCCACTCGAACAGCGCGCCTTTTACGGACA
GGCACGCCCAAGCATATATTCAGGCCGTAACAAAAGGATATGCGGTCGAG
CCTAATCGGCCGGAGGGTCAGTAATCTTTCCCCGCCCACGCCTTGCTCGC
AACGTCGCGTGTACGCACACGCCGCGTACATGACTCCGGTTTTTCGCCCC
GGGGCGTAAATGCGCAGCCTCCCCAGTTGGTGTGTCGTACTAGATACTAG
ATACAACAGTAAACGCCCCACGGGTGGTGGAGATACCCAACCAAGACAGA
TCCCCGCCCCCGGCTCCAATCAAGCCTCCACGCCAATGTGCGTCGCGGGG
GTAAGTTTCCCCACACGCGACCTGCTTCCACGTCTCAAAGGACCTCTTAA
AAAAAAAACCAAAAAAACGATCGAACAATAGCAAGATCGACACACACCTA
CCAAACGTACACGTTATAACCACATACTTCAAAGTAAGAGACTACTGTAA
TATAATAATAGCCTAGAGATCAAGAAAGATTATAATCGCAGCGGCGATCC
ACGCCAGGGCGAGTGCAATCAATGTCACGAAGATCGAGCACAACAAAACG
TCACAGAACCTGGGCTTTTCCCTTCCTCCTCGCGTCTGATGCCTCCGATA
GGGGGCGTACCCCGCGTACATGAGTTTCTGCTGGATGGCGAACACTGAGA
ATATGTAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig119:362076..363983+

>mRNA_A-nodosum_M_contig119.38.1 ID=mRNA_A-nodosum_M_contig119.38.1|Name=mRNA_A-nodosum_M_contig119.38.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=261bp|location=Sequence derived from alignment at A-nodosum_M_contig119:362076..363983+ (Ascophyllum nodosum dioecious)
ATGACTGCATTGCAGTATACAGGCGGCCCGAAACGAGTGTCTCTGCCGGG
AAGAGAAGCTGTATTGGGAAGCGCTTCGCGCGCGGGGCAACTACACCCGC
GCGTCCATTGGTGGCTTTGCACGTGCCCAACCTCTTTCTCAGAAAACCTG
CGAAGCGCTGTCCAGAGAGCTACAGGGGCGTGTAACTTGCATCAGCTCTG
GCGGGGGGCGTACCCCGCGTACATGAGTTTCTGCTGGATGGCGAACACTG
AGAATATGTAG
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