mRNA_A-nodosum_M_contig119.33.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig119.33.1
Unique NamemRNA_A-nodosum_M_contig119.33.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig119.33.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig119contigA-nodosum_M_contig119:333859..339621 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FJE9
PFAMsGTP_EFTU,IF-2,IF2_N,IF2_assoc
Model size431
Max annot lvl2759|Eukaryota
KEGG koko:K02519
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464
Exons2
Evalue1.22e-05
EggNOG OGsCOG0532@1|root,KOG1145@2759|Eukaryota
Descriptiontranslation initiation factor activity
Cds size273
COG categoryJ
BRITEko00000,ko03012,ko03029
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866604.58902-UTR-A-nodosum_M_contig119:333858..3340161680866604.58902-UTR-A-nodosum_M_contig119:333858..334016Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig119 333859..334016 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866604.604106-CDS-A-nodosum_M_contig119:334016..3342101680866604.604106-CDS-A-nodosum_M_contig119:334016..334210Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig119 334017..334210 +
1680866604.6127021-CDS-A-nodosum_M_contig119:339542..3396211680866604.6127021-CDS-A-nodosum_M_contig119:339542..339621Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig119 339543..339621 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig119.33.1prot_A-nodosum_M_contig119.33.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig119 334017..339621 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig119.33.1

>prot_A-nodosum_M_contig119.33.1 ID=prot_A-nodosum_M_contig119.33.1|Name=mRNA_A-nodosum_M_contig119.33.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=91bp
MRAAMTASYGAVIIALLRTWSSRAFMQPRCPGALACRGVSNFGAKACKRM
QRSASIYMSEQTENRPRAETSEALMRGNEQRVMDGRDGQG*
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mRNA from alignment at A-nodosum_M_contig119:333859..339621+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig119.33.1 ID=mRNA_A-nodosum_M_contig119.33.1|Name=mRNA_A-nodosum_M_contig119.33.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=5763bp|location=Sequence derived from alignment at A-nodosum_M_contig119:333859..339621+ (Ascophyllum nodosum dioecious)
TGCCTGTGTGCCTCACGTTTTCTACGTTCAACGTTGCTTTCGGCTCACCT
CCATCAGACCGCAGTTCACCTAGGTCGTTCTGGGGCCAGAACTTTACGGA
TAAAACAATCATTGATCCTTATTTTAATTAAAGGGAACAACTTTGCTCGT
TCTCCAAAATGCGCGCAGCTATGACTGCCAGCTACGGCGCGGTGATTATT
GCCTTGCTGAGGACATGGTCCTCACGAGCCTTCATGCAACCACGATGCCC
AGGAGCGCTTGCGTGTCGTGGGGTATCCAATTTTGGAGCCAAAGCGTGCA
AAAGGATGCAGCGCTCGGCTAGTATCTACATGTCAGAGCAAACGGAAAAT
AGGTGCGTGTGCTTCTTTCTAGTGCTGCGTGGGAGCATGAATATTGTTTT
AACAGGGCATTTTGATTACAGTACCGTACGAGTGTATACGAGTAGCAATT
TGAGGTTGAACACGGAAACGTTGTTCGTCACATGAACAAGACATGGTGTT
AATCCTGCGCGATCGCTGAGGGGCGCCAGCCACCAATAGCCGCGCATTGC
CCTTGCCCTGGCGCGTACACTAGGGTGACCGTACTCATCTTCTGCGTATG
AGCACACGTTGCGTCCCCCAATGGAGACTAAGCTAAACTAACATGTTACT
CGTACGAACACGAATGTTTACCTGTAAGACAGACACGGCTTTTACTACAA
ATACAATAGAGAATCGACACACACACAGCCGTACAGCCGTAGATGGAGTG
ATTAGTGTGTTCAAGAGAGGCCGATGACCACTACTTGTAGATGTAGATAC
TTTTACTGCTGTGCGTGGCAATCGTTGTCGAGCACCTATTTTAATTCCCC
CCACAAGCCAAGCGCCCGCCTGGTGGTGACGGACTTGACTTTCAGACTCC
AGATGGTATAGCCTGTCTTTTTTCAGAGACGCGACTGTCCTACAGAAAAG
GACAACTACGTTTTGACATTTTTTCCCCCATAACCGGGGGATGCTCAGAA
GGTCTAGGTGTGCTCTGATTTTTCTTTAAACTACAGAACTGTAATATTAG
ATGTAAAAAAAATCAAGAACTGTACGAGCACAAAAATATCTGCACGTACC
AGGTCGGTAGGCCGATACAGTAGTTTGTATCGTCCACTACAGGTACTCTC
AAATTATTTTTACCAGATTTCGCATGATTCGATCTCGTCTACCCTCTCTG
GCTCTCCAACCCGGCTGGCTGCCTCCCGGCCCGGGTGGGACCAATACTGA
AGAGGTGAAGCGAGGGTAAGGGGCGGCGAGAGACTGCCAGCGCTAACAGG
ACGCAGCTTATATGGCATGATCAACTAGCAGCGCACCCGATGGCGTTGAC
GGTGCAATTTCAGCTAAACCCACGCGCAGAACCGCCCGTCCCAACGTTCG
AGGCAAACAAACTTCTGCAGCACCGTCGCGGAAAACGGGAGGAAAGAGAG
GCGCTGCGAGGTAGCACCAGGTTCGGCTCGGGTGTGTAAGATGGGCGAGC
CGGGGGTGGGAGAGCCAAACCCCGCTTGCGAGACCAAAAACTCGGGCGCG
AACGAGGGCAGGAATTCGAGGATACGAGTATTTGTTAAAAATAGTACCTG
GTACAAAAAGAAGTAAAGCTCTCGCCAGCAAGCAGAGGCGCAGAAGCAGA
GCGGCTCGGCGCGCATCACGACGACAAGCGAGCAACGACCGCGACCGAGC
TCGCAGGAGAGAACTCATCGTTGCTTTCCACAATGTGGGGACGATGACTG
TGGATGACAAGCACGGCTTTGGCCGAGCAGCTGAGGTCGTAGGCGTGTAC
CAGGAGATGGGCTGTGGCATCGTTGGTCTGCTGGAACTGGATATGAAGTT
TACCGCAGCGGGGAGTCCGAGGGGACGGGGGAGGGAAAAAGGGCCAAGGT
GGAATTGGACTGGCTGTTCACAAGAGTATTTCCCGTACCGAAGGGCCATC
GCCGGAATTCATCAGCGACTGGCTACTGAAGGTGACGGTTGAATGGTGCA
GTTGAGCTCGGCCTGTGATGTTCGTTTTGGATGTGCACCAACAGACGCCC
AAACTGTTGGGGAAAAGCACGCTTTCTGGACGGCCCTAGACAGGGCCCTG
AAGGTACCGCCCGAGCACCTACAGCTGTTTGGTTAATGGACTCCAACGCA
CGCACGGGACGGAGGGAAGGGGAAGGGAGGGGCTTGGGAGTGCCCAAACT
GTTGGGGGAAAGCACGTTTTCTGGAGGGCTCTAGACAGGGTCCTGAAGGT
ACCGCCCGAGCACGTACAGCTGTTTGTGTTAATGGACGCCAACGCACGCA
CGGGACGGAGGGGAGGGGGGGGAGGGGCTTGGGAGTGTAAAGTTATCGGT
GCCTACGGTCGAGATACGCTCAACGATAATGGTGAGCGACCCCAGTCCTT
TTCTGCCAATCATGGACTTGCACTGTTCGATACGTTCTTCGACACCGCCA
ATAACGCAACTTTGCATACGTTCAACGTGCGAGGCAAAAAACGTGTTGAC
TACATCCCGACGAGACCGCGAAACAGATGGCTCGTGCGGGACGTTACTGT
GCACCCCCAACCGTCATTTCTACCCATCTCGGACCACAGCGTCGTCACAG
CACACGTAAAACTGCTCGATTTCTTCCCTCGCAACCGACCGGTGAGGTGA
GGAGGGTAAAGAGACCGCCGCCTATCGACCGGCGACGGCTAGCTAATTAC
CCCAATCTACGCCAGGAAGTAGCAACAGTGATCGGAGACCGCTTCAGAGC
GGCACCCCCGAGCGGCACACCCGAGCGGCAGGAGTGTTGATGATTTGAAG
ACTCCTTTTGCGATTGTCATACTGCAGACAGCAGAGCTGGTTGCTCCGCG
GCAAGGGCGCAGGCTTTAGGGGCGGTGATAGAGGGGTGACACCCAGGCAG
AAGCAGAGCTCAACATGGCGATGGCCGCTAAACGAGCAACCTGGAAGCGG
CAAAATTGTGATGCGCAGGACAGTAAGCTGAAGAGAGCTGTCCGGTGAGC
AAACACGCATGCTCAGAGGGTCTGCGACGCTGCATACGCAAGGTTCCTTG
GAAAATACGTCCAAGGTCTGGAGGAGGAGTTGCGCCAGCGCGATCAGAGG
GAACTCTTCCAGCGCCTCAAGTCCTGAGCATAGAAGACGTGCGGAAGGTT
AGGTCGCAGTACATCCGTGACGGAGAGGGATGGATGCTGCAAGACCCAGG
ACATATTCTCGGAAGGTGGGCGCGGTTCTTCGGCGCTCTTCTCAACGCGA
AATCTGACAAGCTCAGACTTGACATCATCGAAGGGCTCCCCCAGTGGCCT
ATACGCGCTCTCGGGGTCTAACCGATAGAAAACGAGGTAACCGCAGCCTT
GAGGTCGATGGCGAACGCGAAGGCATTGGGACCGTAGGAGTTCCCAGTCG
AACTCCTCAAACTCGTGCTGAACCATGACCCGACCGTGCTCCGGGAGTCC
CAACGGATGATCAAGCTGGTATGGCACCAACGGAAGGTACCACAGCGGTG
GCGAGATGCTATGACAATCTGCACAAAAAGGACAGGACGGAGTGCGGGGC
TATTGCGGCATCTCACTCGTAGCACACGCGGATAAGATACGTCTCAAGAT
AGTCGCTACGAGTCTCAAGCGCCTAAGAGGCGAAGGGACTGCTGTAGGAG
GGGCAGTGCAGGTTTCGCCCGACGACGGATACGATGTTCGCGGTGCACAG
GCTGCAAGAGTTGGGAAGAAAAGCTCGTGTTTTTTTGCGTTGCTGCAAGA
TCCTGTGATTCATGGACCTGCAGAAGGCTAAGACTCTGTCGATCACACAC
TGCTTTGGCATATACTCGCTCGCTTCGCACTACCGGCGCAAATGATAGAA
GTGATCCGCCAATTCCACGATGGGATGAGAGCTTGCGTGCGAAGTGATGG
CGGCGTATTCTCGGAGCGGTTCGAGGTGGCGCATGAGCTTCGTCAATGAT
GCGTGCTTTCCCCGCTGCTGCTCAACGTTTTCTTCGCTGTGGTACTCCTC
GTCGCACTAGAGAGACTCAGCGAGAACGCGGACATACTCGCAGGTCTTGC
CTATCTTCAAGAGGAACCATCGAAGGTTGGCCCTGAAATGGCACTGGAAT
GTGCGCGGCGTGCGATTTGTGGGATACTGTATACTGATGACATTCGCATC
GTGTCGCGGTCGCCGCGTGGGTTGGAGTCTTTGTCGAAGTCTCCGGCGTA
TTTGGTCTAGCCATCTCTGAGAGCAAGACGGAGACCACGCGCATGCCGAT
TCCGTGCGTGCTGGCAACGCAGGTAGTTTTCTACGCCACGGAGCAAGAGT
ACCACCAGACAACCTTGTTCAACTATTTAGGAAACGCCGTCACTGAAACC
CCAAACCTGTCGGCCGAAATTGACCGACGGATCCATAGGGAGTGAACGAG
CTTCAGGCGTTACACCCGGGAGCTGTACGACCGCCGGAAGGCAAATCTGC
CGCACCTGAAGACCCGGATGGTAGTAGATGGGAGACATCAACCCCTCTTA
AGGGCCACTATAAGAAGCTCCGTACTGTACGTCACAGGTTCTTGATGATG
AAGTTGCTTCGAATCCTTGGAGCCTGATGCAAGTCGCCGAACAACCGCAT
CCTCTCCTACAAAGACGCCCTCCAGCGAACTGAAAGGGAGAGTATCAAAG
AAACCTTGATCACAAGGACGTTGGTTCGGGCGTGCACTACTCCGCATGGG
CGACCACAGGTTAACCAAGAGAGTCATGTCGGGAGAGCTGGACAACGCGG
GCCGGGGAGACGGAATGGACGGACTGCGTGGCAGAGAATCATCGGGTGTT
TGGCATCACGGGGGACTATTAACAGAGTAACGCCGCCGCACTGGGCCCTA
GGGTTGCAGGTTTGGTATAACACAGTTTGCGAAGGGGGTCGCAGGTTTAT
GGTCGCGTGGGCGAGGGACGAGGAAAAGGCGCCCGAAACCCGGCAGAGGA
AGAGAGAAGCGGAAGAGGCGAACAAGGTTGAGGTCGCGCGTGGGGCGACT
TAAAACCTTTCAGAACCGCTATGATTGGGCCGGCCCACGGACTTCCGAAG
CAGCATCGGCTGTGCCTGTAGGGAAGCCTGATAACCCTGAGAGTACCATG
TTGTAGACATTATTATGTCTTCGGGTGCAAATGCGAGGTAGTTGCGATCC
GGGGGGTCATCGGATTGCTCTCGGCTGGCGATATTCCAAACCCTCTCTTC
TAGTAAGTGCCCCTCTTTGTGCTGCACGCTTGCGTTATAGCGTTATAGTA
CTGTAATATGCTATTACATCGATATCGATATCGCCATGCATCCGTTTTAT
TTATAGGTTCCCTGCGCTTCTCTGGGTCCTACGTATCCTTTTTGGTCTTT
TGCTTTTGCTTTCTGTTTTTTATTTCCGTTCAATTAATAGTCGTCGTTTT
TGTCTCATATTAATATATTAATCTTGTTTTTTTATGCTCTCGTTGGAGCT
TTATCGATGTCCCTGTACCTGGTAATCTTTTGTCCGTCCAGCAGACCACG
TACCGAGTTAGACAAACCGCGTATACTACTGTATTACTGTGTATGGTTAA
GGCCTGCTCGATCGGTTATTTTGAACAAACACAGACACACACACACAAAG
ACCCTCGATCAACATTCCCATCCTAGAGAGGAGCGCAACACGAACCATTT
GACCTGTTTCGTGCGGGGTGTCACCAATCCCCAGGCCTAGAGCAGAGACT
TCAGAGGCCCTCATGCGTGGGAATGAGCAGCGAGTGATGGACGGCCGAGA
CGGACAGGGGTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig119:333859..339621+

>mRNA_A-nodosum_M_contig119.33.1 ID=mRNA_A-nodosum_M_contig119.33.1|Name=mRNA_A-nodosum_M_contig119.33.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=273bp|location=Sequence derived from alignment at A-nodosum_M_contig119:333859..339621+ (Ascophyllum nodosum dioecious)
ATGCGCGCAGCTATGACTGCCAGCTACGGCGCGGTGATTATTGCCTTGCT
GAGGACATGGTCCTCACGAGCCTTCATGCAACCACGATGCCCAGGAGCGC
TTGCGTGTCGTGGGGTATCCAATTTTGGAGCCAAAGCGTGCAAAAGGATG
CAGCGCTCGGCTAGTATCTACATGTCAGAGCAAACGGAAAATAGGCCTAG
AGCAGAGACTTCAGAGGCCCTCATGCGTGGGAATGAGCAGCGAGTGATGG
ACGGCCGAGACGGACAGGGGTGA
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