mRNA_A-nodosum_M_contig119.25.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig119.25.1
Unique NamemRNA_A-nodosum_M_contig119.25.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig119.25.1 vs. uniprot
Match: D7G2G8_ECTSI (Glucose-methanol-choline oxidoreductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2G8_ECTSI)

HSP 1 Score: 628 bits (1619), Expect = 3.950e-217
Identity = 338/627 (53.91%), Postives = 424/627 (67.62%), Query Frame = 1
Query:   64 MTEPMEVDTVDCDFLLVGAGSSGCVLASRLVRRGLKVLLVEKGTTDVGKLDKLVRRPSEWMAAATSRSPLVDHFVTVPQANLFNRRMHAMRGCGGGGSSNINAGLYCRGREEDYKGHWPWKLEDIEASFESIESELTLEEPRSSSTVGLSWERMLEEMGCKRASLTGEGASLDSRSTDDKRITWTKEGLGGCANTRTTRRQGERQSAWAAFIAPVAAMPNLRIKSDSAVTRVIIERGRAVGIELLEYFPTWRGG-----RSRLRQLRLANEVAEIVLCSGVFRTPKLLMLSGVGPKEHLEDKGIPVLVNMPHVGENLQDHLLGTSMHLSKTLMSPADFAEDGLHGMAYIRCPLRPESG-----------DSEIAIDTGGSKTNEDA-SSLVLGFMFADGGIIPSQIVSIMRLTFTQSGFLGAMAREVIFFLVWLLVRLTPISWIAKHSLSANVALTTVKSRGTVRLASG-DPTCPPVIDPAYLSHPDDEQAIAAAWRTLRRAKTETATGKAVLGYEISPGKGFNNGRDDKSFLTFFKHTAFSFFHPVGTCRMGQGPEDSVVSANSLRVHGVSGLRVADASVAPRIPSVPTQAMAMMIGDRAAALVLGDMATKNQVQVRRQCTRTSKI 1890
            +  P   DTVDCDFL+VGAGSSGCVLASRLVR GLKVLLVEKG  D   L K+V RPS W+  A+S   L + F TVPQA L  R + A  G GGGGSSN+NAGLY RGREEDY+ HWPW+L+DIEASF+SIE+ELTLEE  ++ TV  S  RMLEE+G K         S D  +      TWT+ GLGGC   RTT R GERQ+AW+AF+ PV  MPNL+IK D+AV+RVIIE GRAVG+E++E  P W        R+R+RQLRLA + AEIV+C G FR+PKLLMLSGVGP+ HLE+KG+PV+V+MPHVGENLQDHL+  + ++SKT M+ AD+ ED  H   Y  C L  E+                      S+T   +  + V+G +  DG  +   +  ++ + F + G  GA+ R V+  ++W+   LTP++ I + +    + +T+VKS+GTVRLASG D   PPVIDP Y SHP D +A+   WRT+RRAK ET TG+AV G+E+ PGK FN+  DD+SFL F +     +FHPVGTCRMG+  +DSVVSA+ LRVHG+SGLRVADASVAP IP+ PTQAM MMIGDRAAA+ L D   K QV+ R   T +S I
Sbjct:    3 VASPTADDTVDCDFLIVGAGSSGCVLASRLVRAGLKVLLVEKGPADASTLAKVVGRPSGWVHQASSGEGLSEAFNTVPQAGLGYRELPAYNGVGGGGSSNVNAGLYQRGREEDYEKHWPWELKDIEASFKSIEAELTLEELPTTGTVAPSCARMLEEVGFKSPPRPSSSRSEDGYTEP----TWTRLGLGGCPMKRTTTRGGERQTAWSAFVRPVTTMPNLKIKDDAAVSRVIIEGGRAVGVEVVESAPGWXXXXXXXXRTRVRQLRLAKDRAEIVVCCGAFRSPKLLMLSGVGPRRHLEEKGVPVVVDMPHVGENLQDHLILATSNISKTRMTEADYTEDSFHSATYFSCALPQEAAAPAGXXXXXXXXXXXXXXXXXSRTEAPSPGAAVVGVLHGDGSFLVRNLSGLITMLFVRPGLFGAVGRGVVLAVIWVATWLTPLTRILRGTRCNVMLVTSVKSKGTVRLASGTDAAAPPVIDPGYFSHPQDRRAMLECWRTIRRAKRETTTGRAVFGFELLPGKKFNDCDDDESFLKFAREFCLPYFHPVGTCRMGREVQDSVVSADDLRVHGISGLRVADASVAPHIPATPTQAMCMMIGDRAAAIALRDRFAKEQVKARMIETASSSI 625          
BLAST of mRNA_A-nodosum_M_contig119.25.1 vs. uniprot
Match: L1JH16_GUITC (GMC_OxRdtase_N domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JH16_GUITC)

HSP 1 Score: 291 bits (746), Expect = 4.370e-87
Identity = 202/597 (33.84%), Postives = 284/597 (47.57%), Query Frame = 1
Query:   97 CDFLLVGAGSSGCVLASRLVRRGLKVLLVEKGTTDVGKLDKLVRRPSEWMAAATSRSPLVDHFVTVPQANLFNRRMHAMRGCGGGGSSNINAGLYCRGREEDYKGHWPWKLEDIEASFESIESELTLEEPRSSSTVGLSWERMLEEMGCKRASLTGEGASLDSRSTDDKRITWTKEGLGGCANTRTTRRQGERQSAWAAFIAPVAAMPNLRIKSDSAVTRVIIERGRAVGIELLEYFPTWRGGRSRLRQLRLANEVAEIVLCSGVFRTPKLLMLSGVGPKEHLEDKGIPVLVNMPHVGENLQDHLLGTSMHLSKTLMSPADFAEDGLHGMAYIRCPLRPESGDSEIAIDTGGSKTN---EDASSLVLGFMFADGGIIPSQIVSIM-RLTFTQSGFLGAMAREVIFFLVWLLVRLTPISWIAKHSLSANVALTTVKSRGTVRLASGDPTCPPVIDPAYLSHPDDEQAIAAAWRTLRRAKTETATGKAVLGYEISPGKGFNNGRDDKSFLTFFKHTAFSFFHPVGTCRMGQGPEDSVVSANSL----------RVHGVSGLRVADASVAPRIPSVPTQAMAMMIGDRAAALVLGDMATK 1845
            CD+L+VG G S C L + L   G  V++VE G  +  +  K+V  P  W AAA+   P+   + TVPQ  + ++ M A RG G GG+ N+NA ++CRGR EDY+  WPWKLEDIE  FE  E  L ++   +  + G +   M+ E G K                  K   W ++G+            G R SAW   ++P  A   +++     V+RVI +R +                               +VLC+G F +PK+L+LSG+G  E LE+K +P L+N P+VG +LQDHL+  +   ++  +   D  + G HGM ++           +I      +      E  S +VLG     G  + S++V I+ +L F   G                      I W+ + SL+A + +   +SRG VRL S DP  PP+IDP YLS   D   +   W T +  KT  +  + +L  E+ PG     G     F  + K    S+FHPVGTCRM  G E     +N L          RVHG  GLR+AD SVAPRIPS PTQAMA MIG +AA L+LG    K
Sbjct:   34 CDYLVVGGGCSSCSLVACLAAAGKSVVVVEAGGAEPWER-KVVDDPQSWFAAASHGRPVSRLYRTVPQLAVLSKLMPAFRGEGFGGTGNVNACIWCRGRREDYQ-QWPWKLEDIEKGFEFAERSLRVKRVPAKGS-GAAMCAMMRESGFKTC----------------KEELWAEDGVAEGLYATVQGEAGTRTSAWKELVSPWIAKGRVKVYPHCNVSRVIFDRKK-------------------------------VVLCAGAFDSPKILLLSGIGDPEELEEKTVPPLINNPNVGRHLQDHLILVAAFAARKPLRSCDTNDIGTHGMCHVTIRRESRRRHGQILFKDSWNAWEVLPELCSGMVLGQNI--GSEVISRVVLIVCKLVFYIPG----------------------IKWMLRQSLTAGICMMDPRSRGRVRLRSNDPRDPPLIDPRYLSEESDLVLLHDLWSTFKSVKTSPSAKEWILA-ELLPGAPLMYGESMSWFKWWVKLACSSYFHPVGTCRMPSGKEWETRQSNELSSVSVVDAFLRVHGTVGLRIADCSVAPRIPSAPTQAMAYMIGYQAAQLMLGTRTPK 555          
BLAST of mRNA_A-nodosum_M_contig119.25.1 vs. uniprot
Match: A0A836CG94_9STRA (GMC_OxRdtase_N domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG94_9STRA)

HSP 1 Score: 236 bits (601), Expect = 4.730e-65
Identity = 209/664 (31.48%), Postives = 301/664 (45.33%), Query Frame = 1
Query:   91 VDCDFLLVGAGSSGCVLASRLVRRGLKVLLVEKGTTDVGKLDKLVRRPSEWMAAATSRSPLVDHFVTVPQANLFNRRMHAMRGCGGGGSSNINAGLYCRGREEDYKGHWPWKLEDIEASFESIESELTLEEPRSSSTVGLSWERMLEEMGCKRASLTGEGASLDSRSTDDKRITWTKEGLGGCANTRTTRRQGERQSAWAAFIAPVAAMPNLRIKSDSAVTRVIIERG----------------------------------RAVGIELL-------EYFPTWRGGRSRLRQLRLANEVAEIVLCSGVFRTPKLLMLSGVGPKEHLEDKGIPVLVNMPHVGENLQDH-LLGTSMHLSKTLMSPADFAEDG--LHGMAYIRCPLRPESGDSEIAI-DTGGS--------------------------KTNEDASSLVLGFMFADG-GIIPSQ--IVSIMRLTFTQSGFLGAMAREVIFFLVW--LLVRLTPISWIAKHSLSANVALTTVKSRGTVRLASGDPTCPPVIDPAYLSHPDDEQAIAAAWRTLRRAKTETA--------TGKAVLGYEISPGKGFNNGR-DDKSFLTFFKHTAFSFFHPVGTCRMGQGPEDSVVSANSLRVHGVSGLRVADASVAPRIPSVPTQAMAMMIGDRAAALVL 1827
            +DC++L+VG+G++GC   SRLVR+G KV+L+  G+ D  + D  ++ P+ +++      PL D   + PQ  L  RR     G GGGGS+ INA +Y RGR  DY   WPW L+ +E  F ++E+ L   +P +    G++        G   AS    G  L      +  + W ++G+   A+   +   G R SAW AF+AP+    NL I      TRV+++ G                                  RAVG+E +             R GR R+R LRL+N  AE++LC G   TP+LLMLSG+GP+ HLE   I V V+ P VG  LQDH ++  +  L++ L +P + A  G    GM   R  + P +G+    I D+GG                            + +    +      A+G G   +Q  +V ++           A AR  +  L    +L  +  +   A    S  + L T +SRG VRL S DP   PV DP YLS  +D  A+  A R +R                   + G EI PG  + +    D     +    + + +H   +C MG   +        LRV G   LRVADAS AP +PS  TQAMAMM+GDRAAAL+L
Sbjct:   16 LDCEYLVVGSGAAGCAFVSRLVRQGAKVVLLTDGSIDAFR-DPGIQAPASFLSNLQRGWPLCDPHFSAPQPQLAGRRSLTFVGRGGGGSTLINACIYIRGRRSDYAA-WPWSLDFVEEGFAAVEAVL---QP-ALIPAGVT--------GKALASAMSAGLDLAPAPQREDAVGWVRDGVR--ADMHFSIHAGRRVSAWQAFMAPLVGRSNLTILDRHIATRVLLDGGGGXXXXXXXXXXXXDXXXXXXXXXXXXXXXGSAPRAVGVEAVVADDAAATRAAALRSGR-RVR-LRLSNPAAEVILCCGALYTPQLLMLSGIGPRAHLETHDINVEVDAPGVGAGLQDHPMVPVARELTRAL-APHELAPGGHIFEGMVDFR--VAPATGELVKDIGDSGGDGSXXXXXXXXXXXXXXXXXXXXXXXESSGDGNPPICFQLTLANGRGAASAQAFLVPLVGPNSRAGAGRAAAARVALERLKMRAVLALVPSLRDAAMPVASMYLTLETPRSRGAVRLRSADPADLPVFDPRYLSAEEDRAALRGALRAVRATAXXXXXXXXXXXXAADDIFGAEILPGPAYGDAAASDADLDRYIVEWSVTQWHAAASCAMGAALDAE------LRVRGARALRVADASAAPALPSANTQAMAMMVGDRAAALLL 652          
BLAST of mRNA_A-nodosum_M_contig119.25.1 vs. uniprot
Match: A0A536VLU7_9PROT (Choline dehydrogenase n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536VLU7_9PROT)

HSP 1 Score: 229 bits (583), Expect = 1.540e-63
Identity = 197/624 (31.57%), Postives = 296/624 (47.44%), Query Frame = 1
Query:   91 VDCDFLLVGAGSSGCVLASRLVR-RGLKVLLVEKGTTDVGKLDKLVRRPSEWMAAATSRSPLVDHFVTVPQANLFNRRMHAMRGCGGGGSSNINAGLYCRGREEDYK-----GHWPWKLEDIEASFESIESE-------------LTLEEPRSSSTVGLSWERMLEEMGCKRASLTGEGASLDSRSTDDKRITWTKEGLGGCANTRTTRRQGERQSAWAAFIAPVAAMPNLRIKSDSAVTRVIIERGRAVGIELLEYFPTWRGGRSRLRQLRLANEVAEIVLCSGVFRTPKLLMLSGVGPKEHLEDKGIPVLVNMPHVGENLQDHLLGTSMHLSKTLMSPADFAEDGL----HGMAYIRCPLRPESG--DSEIAIDTGGSKTNEDASSLVLGFMFADGGIIPSQIVSIMRLTFTQSGFLGAMAREVIFFLVWLLVRLTPISWIAKHSLSANVALTTVKSRGTVRLASGDPTCPPVIDPAYLSHPDDEQAIAAAWRTLRRAKTETATGKAVLGYEISPGKGFNNGRDDKSFLTFFKHTAFSFFHPVGTCRMGQGPEDSVVSANSLRVHGVSGLRVADASVAPRIPSVPTQAMAMMIGDRAAALVLGDMATK-NQVQVRRQCTRTS 1884
            ++ D++++G GS+GCVLASRL     + V L+E G +D   L   +  P+  +A           F TVPQ  L  RR +  RG   GGSS++NA +Y RG+ EDY      G+  W  +++   F+  E               L + + RS +  G     +  E G +     G   + D           T+EG+G     + T + GER SA  A++ P  A PNLR+ + + VTR++ E  RAVG+EL +       G  R++  R      E++LC+G  ++P++LMLSG+GP  HL   GI V+ ++P VG+NL DH+    +  +  L      +  GL     G+   R   R  SG   +  A   G  K+  D ++  L F F  G ++                      R+ +F                 H  S +V L   KSRG+V LAS DP   P+IDP +L   DD + +   ++ +RR  ++ A    + GY         N   D++   F +  A + +HP G+CRMG GP D VV A  LRVHG+ GLRV DASV PR+ S  T A  +MI ++AA L+ G  +T  +  Q +R+ T ++
Sbjct:    1 MEFDYVVIGGGSAGCVLASRLSEDAAVSVCLIEAGPSDKSVL---IHCPAG-LAVLAKNGVANWAFATVPQPGLNGRRGYQPRGKVLGGSSSVNAMIYARGQREDYDAWAAAGNPGWGYDEVLPYFKKAEHNERGADAFHGVGGPLNVMDLRSPNRFG----PVFVEAGRQ----AGFAVNADFNGA-------TQEGVG---MYQVTHKNGERFSAAKAYLTPNLARPNLRVLTGALVTRIVTEGRRAVGVELRD-----ASGLQRVQARR------EVLLCAGALQSPQILMLSGIGPAAHLRAHGIDVVHDLPGVGQNLHDHIDVVMVVNAPRLKDLFGLSVAGLVRVVKGIFEWR---RQRSGMLTTNFAEAGGFIKSTPDEATPDLQFHFVVGKLVDH-------------------GRKTVF----------------GHGYSCHVCLLRPKSRGSVTLASADPAAAPLIDPNFLHERDDAERLVRGFKLMRRILSQPA----LAGYGGRESAASANAVSDEAIERFVRDHADTIYHPAGSCRMGPGPND-VVDAE-LRVHGMQGLRVVDASVMPRVVSGNTNAPTIMIAEKAADLIRGAASTTASSTQPQREATTSA 547          
BLAST of mRNA_A-nodosum_M_contig119.25.1 vs. uniprot
Match: A0A1A9MZQ1_9BURK (Glucose-methanol-choline oxidoreductase n=1 Tax=Paraburkholderia ginsengiterrae TaxID=1462993 RepID=A0A1A9MZQ1_9BURK)

HSP 1 Score: 226 bits (577), Expect = 7.290e-63
Identity = 186/606 (30.69%), Postives = 270/606 (44.55%), Query Frame = 1
Query:  100 DFLLVGAGSSGCVLASRLV-RRGLKVLLVEKGTTDVGKLDKLVRRPSEWMAAATSRSPLVDHFVTVPQANLFNRRMHAMRGCGGGGSSNINAGLYCRGREEDYK------GHWPWKLEDIEASFESIESE-------------LTLEEPRSSSTVGLSWERMLEEMGCKRASLTGEGASLDSRSTDDKRITWTKEGLGGCANTRTTRRQGERQSAWAAFIAPVAAMPNLRIKSDSAVTRVIIERGRAVGIELLEYFPTWRGGRSRLRQLRLANEVAEIVLCSGVFRTPKLLMLSGVGPKEHLEDKGIPVLVNMPHVGENLQDHLLGTSMHLSKTLMSPAD-FAED--------GLHGMAYIRCPLRPESGDSEIAIDTGGSKTNEDASSLVLGFMFADGGIIPSQIVSIMRLTFTQSGFLGAMAREVIFFLVWLLVRLTPISWIAKHSLSANVALTTVKSRGTVRLASGDPTCPPVIDPAYLSHPDDEQAIAAAWRTLRRAKTETATGKAVLGYEISPGKGFNNGRDDKSFLTFFKHTAFSFFHPVGTCRMGQGPEDSVVSANSLRVHGVSGLRVADASVAPRIPSVPTQAMAMMIGDRAAALVLG 1830
            D+++VGAGS+GCV A+RLV   G +VL++E+G  D G L K+   P+         SP +  + +  Q +L  R +   +G   GGSS++NA  Y RG   DY       G   W  +D+   F   E               L + +PR        + R ++ MG    +    G                   LGG    +TT  +GER SA  AF+ P+   P L + S + V+R++ E  R VGIE   Y  T             A  VAE++L +G + TP+LLMLSG+GP EHL + GI V V++  VG+NLQDH    S+ +S T       F ED        GL  +A+   P+     ++   ++     ++ D     +G M+ D                 Q G +                          H +S    L   +SRG+V+L S DP    +IDP +LS P D+  +  A + LRR    TA    V+  E  PG  F +   D+  L++ + T  S +HP GTCRMG+  +   V    LRV GV GLRV DAS+ P + S  T A  M + DR   +++G
Sbjct:    4 DYIIVGAGSAGCVTANRLVTEHGKRVLVLEEGPLDTGMLLKM---PAGTFKMLFEGSPFIKRYESEAQPSLGGRTVSVPQGRVIGGSSSVNAMAYVRGSRFDYDCWNEAVGGQGWSWDDLLPYFRRQEGNQRFDNDAHSGDGPLKVSDPRYVVDAADLFVRTMQRMGLPFTADFNAGT------------------LGGVGYMQTTTFRGERCSAATAFLRPIMDRPELTVISKAKVSRLLFEGDRVVGIEYSIYGST-----------ETAYAVAEVILTAGAYATPRLLMLSGIGPAEHLAEHGIKVRVDLRGVGQNLQDH---NSVVVSMTTKGAHGYFGEDKGLRMLTNGLRYLAFRDGPVSSNGAETMAFVNLENPDSDPDLQIYGVGVMWPD----------------PQGGEIS-------------------------HGISLMANLVKPRSRGSVKLRSSDPEDDALIDPNWLSDPSDQSRLLGAIKYLRRIAA-TAPLSDVIHKESQPGAEFQS---DEQLLSYMRRTTESNYHPCGTCRMGRADDPMAVLTADLRVKGVPGLRVFDASMMPSVISANTNATVMAVADRGVDIMMG 529          
BLAST of mRNA_A-nodosum_M_contig119.25.1 vs. uniprot
Match: A0A2T7WBR7_MICTE (Choline dehydrogenase n=1 Tax=Microbacterium testaceum TaxID=2033 RepID=A0A2T7WBR7_MICTE)

HSP 1 Score: 226 bits (576), Expect = 7.720e-63
Identity = 187/595 (31.43%), Postives = 273/595 (45.88%), Query Frame = 1
Query:   85 DTVDCDFLLVGAGSSGCVLASRLVRRGLKVLLVEKGTTDVGKLDKLVRRPSEWMAAATSRSPLVDHFVTVPQANLFNRRMHAMRGCGGGGSSNINAGLYCRGREEDYKGHWP------WKLEDIEASFESIESELTLEEPRSSSTVGLSWERMLEEMGCKRAS-LTGEGASLDSRSTDDKRITWTKEGLGGCANTRTTRRQGERQSAWAAFIAPVAAMPNLRIKSDSAVTRVIIERGRAVGIELLEYFPTWRGGRSRLRQLRLANEVAEIVLCSGVFRTPKLLMLSGVGPKEHLEDKGIPVLVNMPHVGENLQDHLLGTSMHLSKTLMSPADFAEDGLHGMAYIRCPLRPESGDSEIAIDTGGSKTNEDASSLVLGFMF-ADGGIIPSQIVSIMRLTFTQSGFLGAMAREVIFFLVWLLVRLTPISWIAKHSLSANVALTTVKSRGTVRLASGDPTCPPVIDPAYLSHPDDEQAIAAAWRTLRRAKTETATGKAVLGYEISPGKGFNNGRDDKSFLTFFKHTAFSFFHPVGTCRMGQGPEDSVVSANSLRVHGVSGLRVADASVAPRIPSVPTQAMAMMIGDRAAALVLGDMATK 1845
            + V+ D+++VGAGS+G  +  RL+  G +V ++E G+ D       +  P  W    T  +  +   +T PQ +L  R ++  RG   GGSS++N  +Y RG   DY G W       W  +D+   F   E               L  ER+ EE     AS     G       TDD    + +E L G     TT + G R SAW A++AP+   P+L + + + V RV++E GRAVG+E +       G R   R  R      E+++ +G   +P +L+ SG+GP+ HL+D GI V+ ++P VGENL DHLL + ++ +K      D   DG   +   +   R     S +      S T  D   L +   +  DGG  P+Q  +I+                                            +    SRGT+RL + DP   P++DP   +   D +A+  A    RR   + A        E +PG    + RDD     F + T  ++ H VGTCRMG  P  SVV   SLRVHG+ GLRVADASV P +PS  T A ++MIG++AA L+LG  A +
Sbjct:    3 EIVESDYVVVGAGSAGSAITRRLIDAGYRVHVLEAGSPDDSPH---IHSPQGWPWLLTGENDWM--VMTTPQEHLGGRSVYWPRGKTLGGSSSLNGMIYMRGDRTDYDG-WEQAGAEGWSWDDVLPYFLRAEDHADGASAFHGEGGPLHVERIPEERRHPLASAFVAAGVQAGLAPTDD----FNRESLDGVGFNHTTTKDGRRHSAWQAYVAPLGDTPSLAVTTGALVDRVVVENGRAVGVEAVV-----DGERVLFRASR------EVIVSAGAIGSPAILLRSGIGPRAHLDDLGIDVVADLPGVGENLHDHLLVSILYSAK------DPVRDGRWNLLEAQLFAR-----SSVC-----SGTAPDLQPLFIHMPYPTDGGAAPAQGYTIVA------------------------------------------GIVRPYSRGTIRLEAADPAVAPLVDPQIFADERDLEAMVDAIELSRRVGAQDAFAP-FRAEEFAPGAEVVS-RDD--LRAFARRTVGTYHHQVGTCRMGSDPA-SVVDP-SLRVHGIDGLRVADASVMPFVPSANTNAPSIMIGEKAADLLLGATAAR 512          
BLAST of mRNA_A-nodosum_M_contig119.25.1 vs. uniprot
Match: A0A8I1R2V6_9HYPH (GMC family oxidoreductase N-terminal domain-containing protein n=1 Tax=Bosea sp. TaxID=1871050 RepID=A0A8I1R2V6_9HYPH)

HSP 1 Score: 226 bits (575), Expect = 1.580e-62
Identity = 204/602 (33.89%), Postives = 284/602 (47.18%), Query Frame = 1
Query:  100 DFLLVGAGSSGCVLASRLVRRGL-KVLLVEKGTTDVGKLDKLVRRPSEWMAAATSRSPLVDH------FVTVPQANLFNRRMHAMRGCGGGGSSNINAGLYCRGREEDYK-----GHWPWKLEDIEASFESIESELTLEEPRSSSTVGLSWERMLEEMGCKRASLT-------GEG-----ASLDSRSTDDKRITWTKEGLGGCANTRTTRRQGERQSAWAAFIAPVAAMPNLRIKSDSAVTRVIIERGRAVGIELLEYFPTWRGGRSRLRQLRLANEVAEIVLCSGVFRTPKLLMLSGVGPKEHLEDKGIPVLVNMPHVGENLQDHLLGTSMHLSKT-LMSPADFAEDGLHGMAYIRCPLRPESGDSEIAIDTGGSKTNEDASSLVLGFMFADGGIIPSQIVSIMRLTFTQSGFLGAMAREVIFFLVWLLVRLTPISWIAKHSLSANVALTTVKSRGTVRLASGDPTCPPVIDPAYLSHPDDEQAIAAAWRTLRRAKTETATGKAVLGYEISPGKGFNNGRDDKSFLTFFKHTAFSFFHPVGTCRMGQGPEDSVVSANSLRVHGVSGLRVADASVAPRIPSVPTQAMAMMIGDRAAALVLG 1830
            D ++VGAGS+GCVLA RL   G   VL+VE G  D           S W+           H      + TV Q  L  R ++  RG   GGSS+INA +Y RG+ ED++     G+  W   ++ A++  +E         SSS  G      +EE+  +   LT       GE      A L+  S +            G    + T R G R+SA  AF+ P      LR+++D+ VTR+++E+ RAVG+E+       RGG  +  + R      E+VL  G F +P+LL LSG+GP E L   GI  L ++P VG NLQDHL    ++ S+   ++ A  +     GM  +   L    G   ++++ GG            GF        P      M+L F+   +  A+        V  L++  P         S +V+     SRG V + S DP   P I P YL+ P+D   + A  R LRR    T T  A++  EI PG       D+ + L   +  A+S FHP GTCRMG  P  +VV A  LRVHGV GLRVADAS+ P IPS    A AMM+G+RAAAL++G
Sbjct:    5 DVIIVGAGSAGCVLAGRLADAGWGTVLVVEAGPQD----------RSPWIHLPIGYGKTFYHPRLNWMYRTVSQPALDGREIYQPRGKVVGGSSSINAMVYARGQAEDFEEWERLGNPGWGWAEVLAAYRRMEDHAL----GSSSWHGAGGPLHVEEIAGQAHPLTPLFIEAAGEAGLPFNADLNGASCE------------GAGFYQITTRGGRRESAARAFLHPARRRGRLRLETDALVTRILVEQRRAVGVEV------HRGGEIQRYRAR-----REVVLAGGAFNSPQLLQLSGIGPPELLASHGIAPLRDLPAVGRNLQDHLCYDHVYRSRQPSLNEALLSWPARVGM--VANYLLRRRGPLSLSVNQGG------------GFFRTR----PELSRPDMQLYFSPLSYERAVPG------VRALMKPDPFP-----GFSLSVSPCRPASRGHVAIRSPDPRLAPEIAPNYLAEPEDIHTLLAGARFLRRLAA-TPTLAALIDAEIRPGP---EAADEDAHLAAIRRNAYSVFHPCGTCRMGPDPRTAVVDAR-LRVHGVEGLRVADASIFPTIPSGNINAPAMMVGERAAALMMG 535          
BLAST of mRNA_A-nodosum_M_contig119.25.1 vs. uniprot
Match: A0A1G8EK17_9MICO (Choline dehydrogenase n=1 Tax=Agrococcus jejuensis TaxID=399736 RepID=A0A1G8EK17_9MICO)

HSP 1 Score: 224 bits (571), Expect = 4.420e-62
Identity = 186/583 (31.90%), Postives = 275/583 (47.17%), Query Frame = 1
Query:  100 DFLLVGAGSSGCVLASRLVRRGLKVLLVEKGTTDVGKLDKLVRRPSEWMAAATSRSPLVDHFVTVPQANLFNRRMHAMRGCGGGGSSNINAGLYCRGREEDY-----KGHWPWKLEDIEASFESIESELTLEEPRSSSTVGLSWERMLEEMGCKRASLTGEGA-SLDSRSTDDKRITWTKEGLGGCANTRTTRRQGERQSAWAAFIAPVAAMPNLRIKSDSAVTRVIIERGRAVGIELLEYFPTWRGGRSRLRQLRLANEVAEIVLCSGVFRTPKLLMLSGVGPKEHLEDKGIPVLVNMPHVGENLQDHLLGTSMHLSKTLMSPADFAEDGLHGMAYIRCPLRPESGDSEIAIDTGGSKTNEDASSLVLGFMF-ADGGIIPSQIVSIMRLTFTQSGFLGAMAREVIFFLVWLLVRLTPISWIAKHSLSANVALTTVKSRGTVRLASGDPTCPPVIDPAYLSHPDDEQAIAAAWRTLRRAKTETATGKAVLGYEISPGKGFNNGRDDKSFLTFFKHTAFSFFHPVGTCRMGQGPEDSVVSANSLRVHGVSGLRVADASVAPRIPSVPTQAMAMMIGDRAAALVL 1827
            +++++GAGS+G  +A RLV  G  V +VE G  DV   D  V  P  W A   S +      +T PQ +L  R ++  RG   GGSS++N  +Y RG   DY      G   W  +++   F   E  +   +        L  ER+ +E+    A+   + A       TDD    + +E L G     TT R G R SAW AF+AP+   P L + +D+ V+RV++E GRAVG+E +    T            +A   AE+V+ +G   +P +L+ SG+GP  HL D GI V+ ++P VGENL DHLL + ++ SK  ++   +  + L    Y R            ++  G +    D   L +   +  DGG  P Q                                         ++L+A +      SRGT+RLAS DPT  P++DP   +   D +A+  A   +RR   + A  + +   E +PG    + RDD     F + T  ++ H VGTCRMG   +D  V    LRV GV+GLRVADASV P +PS  T A ++MIG++A+ L+L
Sbjct:    7 EYVVIGAGSAGSAIARRLVDAGHSVHVVEAGPVDV---DPDVHSPQGWPALLMSPNDWA--VMTTPQQHLGGRVLYWPRGRVLGGSSSLNGMIYMRGDRSDYDTWEASGAVGWSWDEVLPYFRRSEDHVDGADAFHGEGGPLRVERIPDELRHPVAAAFVDAAVEAGIERTDD----FNRERLDGAGFNHTTTRDGRRASAWQAFVAPILGSPLLTVTTDALVSRVLVEDGRAVGVEYVVDGVT-----------HVARATAEVVVSAGAIGSPAILLRSGIGPAAHLGDLGITVVADVPGVGENLHDHLLVSVLYSSKEPVAAPRW--NLLESQLYARS-----------SVCEGPAP---DLQPLCIHVPYPTDGGAAPEQ----------------------------------------GYTLAAGIVRP--HSRGTIRLASADPTVAPLVDPNVFADERDVEAMVDAIELVRRVGAQDAFAE-LRDAEFAPGPDVTS-RDD--LRAFARATVGTYHHQVGTCRMGG--DDLAVVDPELRVRGVAGLRVADASVMPMVPSANTNAPSIMIGEKASDLLL 505          
BLAST of mRNA_A-nodosum_M_contig119.25.1 vs. uniprot
Match: UPI0013EAEDA1 (GMC family oxidoreductase N-terminal domain-containing protein n=1 Tax=Rhizorhabdus phycosphaerae TaxID=2711156 RepID=UPI0013EAEDA1)

HSP 1 Score: 224 bits (570), Expect = 7.360e-62
Identity = 192/591 (32.49%), Postives = 273/591 (46.19%), Query Frame = 1
Query:  100 DFLLVGAGSSGCVLASRLVRRGLKVLLVEKGTTDVGKLDKLVRRPSEWMAAATSRSPLVDHFVTVPQANLFNRRMHAMRGCGGGGSSNINAGLYCRGREEDYKGHWP------WKLEDIEASFESIESELTLEEPRSSSTVGLSWERMLEEMGCKRASLT-----GEGASLDSRSTDDKRITWTKEGLGGCANTRTTRRQGERQSAWAAFIAPVAAMPNLRIKSDSAVTRVIIERGRAVGIELLEYFPTWRGGRSRLRQLRLANEVAEIVLCSGVFRTPKLLMLSGVGPKEHLEDKGIPVLVNMPHVGENLQDHLLGTSMHLSKTLMSPADFAEDGLHGM-AYIRCPLRPESGDSEIAIDTGGSKTNEDASSLVLGFMFADGGIIPSQIVSIMRLTFTQSGFLGAMAREVIFFLVWLLVRLTPISW--IAKHSLSANVALTTVKSRGTVRLASGDPTCPPVIDPAYLSHPDDEQAIAAAWRTLRRAKTETATGKAVLGYEISPGKGFNNGRDDKSFLTFFKHTAFSFFHPVGTCRMGQGPEDSVVSANSLRVHGVSGLRVADASVAPRIPSVPTQAMAMMIGDRAAALVLG 1830
            DF+++GAGS+GCVLA+RL   G  VLLVE G  D      L+  P  + +    +      + TVPQ ++  R M  +RG   GGSS+ N  LYCRG   DY G W       W   DI   F   E      +        L  +R        RA +      G   S D    D       ++G G   +T      G+R SA  A++ P  A PNL I + +  TR++++  RAVG+EL       +G   RLR++      AE++L +G  ++P LLMLSG+G  +HL   G+  LV++P VG NL DH   T+ H S T         + +H   A++R  +R +    E +I+  G+             M   G  +P      ++  F                     + L P+S   I  H +   + LT  +SRGT+RLAS DP   P+IDP YL+ P D   +    R   R   E     A   + + P     +  DD +   F + T  +  H  GTC MG+GP DSVV A  LRVHGV GLRV DAS+ P++ S  T A  +MI ++A+ ++LG
Sbjct:    6 DFIIIGAGSAGCVLANRLSADGASVLLVEAGPAD---RSALIHIPGLF-STLYRQGRFAWEYRTVPQRHVDGRVMRDVRGKVLGGSSSTNGMLYCRGAAADYDG-WAAMGNAGWSYADILPYFRRAEDHADGADAFHGVGGPLKVQRSPMNHPLARAFVAAAVEAGHPYSADINGAD-------RQGFGPADSTIAG---GKRWSAAQAYLRPAMARPNLEILTGAQATRILLDGSRAVGVELAH-----KG--DRLRRMG-----AEVILAAGALQSPHLLMLSGIGAADHLRQNGVSPLVDLPGVGSNLHDHASVTA-HASCTYSGTLAKLLNPVHAAGAFLRYMVRKDGVMGECSIEASGT-------------MRTPGAAVPD-----IKCQFVP-------------------IPLDPVSGLPIRSHGMINRMELTVPESRGTLRLASSDPFVAPLIDPNYLAEPADRAKL----RFAIREAIEIFRQPAFAPFGVEPLLPVADMDDDDALDAFVRATLTNDHHAAGTCAMGKGP-DSVVDAR-LRVHGVEGLRVVDASIMPKVVSGNTNAPVIMIAEKASDMILG 525          
BLAST of mRNA_A-nodosum_M_contig119.25.1 vs. uniprot
Match: A0A849E3W6_9HYPH (FAD-binding protein n=1 Tax=Anderseniella sp. TaxID=1872568 RepID=A0A849E3W6_9HYPH)

HSP 1 Score: 223 bits (569), Expect = 7.640e-62
Identity = 197/594 (33.16%), Postives = 282/594 (47.47%), Query Frame = 1
Query:   91 VDCDFLLVGAGSSGCVLASRLVRR-GLKVLLVEKGTTDVGKLDKLVRRPSEWMAAATSRSPLVDH-FVTVPQANLFNRRMHAMRGCGGGGSSNINAGLYCRGREEDYKGHWP---WKLEDIEASFESIESE-LTLE---EPRSSSTVGLSWERMLEEMGCKRASLTGEGASLDSRSTDDKRITWTKEGLGGCANTRTTRRQGERQSAWAAFIAPVAAMPNLRIKSDSAVTRVIIERGRAVGIELLEYFPTWRGGRSRLRQLRLANEVAEIVLCSGVFRTPKLLMLSGVGPKEHLEDKGIPVLVNMPHVGENLQDHLLGTSMHLSKTLMSPADFAEDGLHGMAYIRCPLR---PESGDSEIAIDTGGS--KTNEDASSLVLGFMFADGGIIPSQIVSIMRLTFTQSGFLGAMAREVIFFLVWLLVRLTPISWIAKHSLSANVALTTVKSRGTVRLASGDPTCPPVIDPAYLSHPDDEQAIAAAWRTLRRAKTETATGKAVLGYEISPGKGFNNGR--DDKSFLTFFKHTAFSFFHPVGTCRMGQGPEDSVVSANSLRVHGVSGLRVADASVAPRIPSVPTQAMAMMIGDRAAALV 1824
            +  D++++GAGS+GC LASRL     ++VLL+E G  +   L   +R P+ +  AA    P+ +  F T PQ  L  R+ +  RG G GGSS INA +Y RGRE DY   W    W+  D+E SF ++ES  LT+    EP +++T+ L          C  + L  +    D   T+         GL      RTT R GER S+  AF+ PV+   NL + + +    ++I  G AVG+    Y+          R  R A    E++LC+GVF+TP+LLM+SG+GP   L+   IPVL++ P VG NLQDH+     +  KT   P         G A +    +     +G     I   G+  K++ D  +  L   FA G I+ +                    R++                 A H +S +++L    SRG V L S DP  PP I+P YL+H DD   +   ++ +R+     A       +     K  +  R   D   + + +  A + +HPVGTCRMG   E   V    L+V+GV GLRVADAS+ PRI S  T A AMMIG RA  L+
Sbjct:    1 MQADYIIIGAGSAGCALASRLSENPAVRVLLLEAGGNNTSAL---LRAPAGF--AALLPWPISNWAFKTEPQPGLKGRKGYQPRGKGLGGSSAINAMVYARGRESDYDD-WDVSGWRWRDVEPSFAALESGGLTVSDQTEPFAATTMFLE--------ACAASGLP-QMPGFDELDTE-------ASGL-----YRTTIRDGERCSSADAFLRPVSDRKNLTVLTGARAGGILISEGHAVGVR---YYKD--------RAWREALATHEVILCAGVFQTPQLLMVSGIGPSRELQAHNIPVLLDRPGVGANLQDHVNYVMTY--KTRAGPETLGASASGGKAIMDAVKQWRNHRTGKLTSPIAEAGAFIKSSGDLETPDLQLHFAPG-IVDNH------------------GRKMH----------------AGHGMSIHLSLLKPNSRGRVSLISRDPLQPPQINPQYLAHTDDVDRLVTGFKRVRQLFQHKA-------FASIRRKDMHTDRVESDAEIINWIRKRADTLYHPVGTCRMGGAEEAMSVVGPDLKVNGVDGLRVADASIMPRIISANTNAAAMMIGWRAGGLI 512          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig119.25.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2G8_ECTSI3.950e-21753.91Glucose-methanol-choline oxidoreductase n=2 Tax=Ec... [more]
L1JH16_GUITC4.370e-8733.84GMC_OxRdtase_N domain-containing protein n=1 Tax=G... [more]
A0A836CG94_9STRA4.730e-6531.48GMC_OxRdtase_N domain-containing protein n=1 Tax=T... [more]
A0A536VLU7_9PROT1.540e-6331.57Choline dehydrogenase n=2 Tax=Betaproteobacteria b... [more]
A0A1A9MZQ1_9BURK7.290e-6330.69Glucose-methanol-choline oxidoreductase n=1 Tax=Pa... [more]
A0A2T7WBR7_MICTE7.720e-6331.43Choline dehydrogenase n=1 Tax=Microbacterium testa... [more]
A0A8I1R2V6_9HYPH1.580e-6233.89GMC family oxidoreductase N-terminal domain-contai... [more]
A0A1G8EK17_9MICO4.420e-6231.90Choline dehydrogenase n=1 Tax=Agrococcus jejuensis... [more]
UPI0013EAEDA17.360e-6232.49GMC family oxidoreductase N-terminal domain-contai... [more]
A0A849E3W6_9HYPH7.640e-6233.16FAD-binding protein n=1 Tax=Anderseniella sp. TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig119contigA-nodosum_M_contig119:267658..276507 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G2G8
PFAMsGMC_oxred_C,GMC_oxred_N
Model size1911
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons6
Evalue6.47e-218
EggNOG OGsCOG2303@1|root,KOG1238@2759|Eukaryota
Descriptionflavin adenine dinucleotide binding
Cds size1911
COG categoryE
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig119.25.1prot_A-nodosum_M_contig119.25.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig119 267658..276507 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866604.1779273-CDS-A-nodosum_M_contig119:267657..2680491680866604.1779273-CDS-A-nodosum_M_contig119:267657..268049Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig119 267658..268049 +
1680866604.1898487-CDS-A-nodosum_M_contig119:273134..2731831680866604.1898487-CDS-A-nodosum_M_contig119:273134..273183Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig119 273135..273183 +
1680866604.2023747-CDS-A-nodosum_M_contig119:274028..2745711680866604.2023747-CDS-A-nodosum_M_contig119:274028..274571Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig119 274029..274571 +
1680866604.217722-CDS-A-nodosum_M_contig119:274921..2755111680866604.217722-CDS-A-nodosum_M_contig119:274921..275511Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig119 274922..275511 +
1680866604.2308624-CDS-A-nodosum_M_contig119:275753..2758881680866604.2308624-CDS-A-nodosum_M_contig119:275753..275888Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig119 275754..275888 +
1680866604.24091-CDS-A-nodosum_M_contig119:276305..2765071680866604.24091-CDS-A-nodosum_M_contig119:276305..276507Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig119 276306..276507 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig119.25.1

>prot_A-nodosum_M_contig119.25.1 ID=prot_A-nodosum_M_contig119.25.1|Name=mRNA_A-nodosum_M_contig119.25.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=637bp
AHSVIIQLHPIEGRTTGLHTGMTEPMEVDTVDCDFLLVGAGSSGCVLASR
LVRRGLKVLLVEKGTTDVGKLDKLVRRPSEWMAAATSRSPLVDHFVTVPQ
ANLFNRRMHAMRGCGGGGSSNINAGLYCRGREEDYKGHWPWKLEDIEASF
ESIESELTLEEPRSSSTVGLSWERMLEEMGCKRASLTGEGASLDSRSTDD
KRITWTKEGLGGCANTRTTRRQGERQSAWAAFIAPVAAMPNLRIKSDSAV
TRVIIERGRAVGIELLEYFPTWRGGRSRLRQLRLANEVAEIVLCSGVFRT
PKLLMLSGVGPKEHLEDKGIPVLVNMPHVGENLQDHLLGTSMHLSKTLMS
PADFAEDGLHGMAYIRCPLRPESGDSEIAIDTGGSKTNEDASSLVLGFMF
ADGGIIPSQIVSIMRLTFTQSGFLGAMAREVIFFLVWLLVRLTPISWIAK
HSLSANVALTTVKSRGTVRLASGDPTCPPVIDPAYLSHPDDEQAIAAAWR
TLRRAKTETATGKAVLGYEISPGKGFNNGRDDKSFLTFFKHTAFSFFHPV
GTCRMGQGPEDSVVSANSLRVHGVSGLRVADASVAPRIPSVPTQAMAMMI
GDRAAALVLGDMATKNQVQVRRQCTRTSKILTEGLS*
back to top

mRNA from alignment at A-nodosum_M_contig119:267658..276507+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig119.25.1 ID=mRNA_A-nodosum_M_contig119.25.1|Name=mRNA_A-nodosum_M_contig119.25.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=8850bp|location=Sequence derived from alignment at A-nodosum_M_contig119:267658..276507+ (Ascophyllum nodosum dioecious)
GCCCACTCTGTCATAATTCAATTACATCCAATCGAGGGCAGGACGACGGG GTTACACACAGGCATGACTGAACCGATGGAAGTCGATACTGTGGACTGTG ATTTTCTTCTTGTGGGCGCTGGCTCGAGCGGATGCGTGCTGGCTTCCAGA CTTGTACGACGGGGTCTGAAGGTGTTACTCGTAGAAAAGGGCACGACTGA TGTTGGGAAGCTCGACAAGCTTGTGCGCAGGCCCTCGGAGTGGATGGCGG CGGCCACTAGTAGGAGCCCGCTGGTGGATCATTTTGTGACCGTTCCTCAG GCGAATCTATTCAACCGGCGAATGCACGCCATGCGAGGATGTGGAGGTGG AGGTTCTAGCAACATCAACGCTGGTCTGTACTGTCGAGGGAGGTGTGCTA CACATGCAATCCTGTACAGTATACCTGTCTTAAGAATCTTGAACTTGCAT CGCGACAAAAAACAGTAGTAATAGCGGAAAAGAATGGTTGGACAACTTTG CAGTAGTTGGGATAGTGAAACTGGTAAATAAAACAAAGGTCTAGGCGCGC TCTGATTTTTCTTTAAACAGACGAGAGGGGACATGCACGGTGTGCGTCAC ATGATTTTTCAGGAAAAAAAACAAACGAACACTGAAGGGGCCCAAATCTG GTGCTTACGTACGGGATTCCTCGCCATTTCCGCGGCGGCGTCCATTTATT TATTTTAAACCGCCATACGTCATCGGGTCAGTCCCGAGTTTATCGGGTCA CGCAATTGCGTGCCGATGGCCTTCACTACCGAGAGTCCGCCGGCACAGGG CCAGTAAATTTCCAGGTAGTTCCGAACGAGTGCTGCCTTGGCAGGTCACC ATGGACCAATTAATATGTTGTTGTTGTTGTTGTCTTCACATTAAAAGCCG TTTCGGTCTCTACTCGGTACTTTCTAACATCCGTACTGGCCCAACTGACG CGAACGCCTTCCGTGGTCACAGGCTAACTACCCAGAAAGGGTACACATAT CAGAAAGAAATAAAAGGGCCCAGAAAAGTCAACACACACGCGATAATTGG AAAATAAAATAAAACCCCCCAGAAAAATAAGGCTCCAGACAGTCAGACGT CGCAGGCGACATGTCAGACAAAGGAGATATATAGAGCCCATCGCTCCCAC TCGACTCGCGAGGCCAAGCAAAATGAAACAAACAAGAAGAATCAAGGATA ACCAATCAAGACAATAAAATCGCATGTGTTGTTGTTGTTGTTTTCTTCAC ATTAACCGATCGGGCCTCAACCATACCCAGTAATACACGTGGTTGCCAAT CCGGTACGTGGTCTGCTGGACAGAAAAAGATCAGAGGAATATCTACCATG TTCGAGTGAACGACTTAACGACTTAATAACCGTTTCATCCACGTGGGAGT TGACACCAGTAGGTACGCGCTACTCATAGGGGGATGGAGTTTACCCCCCT ATATTAGCTAAGTTACTTTGCCTACGTTCAGTGTGGTTGTACGTGTTGGT AATTGTTTTCCTCCTGTGTTGGTTATTGGGTGTGGAAGTACGCGGCACGG ATATGTGCTGTATGGGTAGATAATAATACAAGACATGTGTGTACACCATC TATACCTGCAGGGCTTGAAGTGCCCGTCCCCATTTACGACCAACTCAATC ACCCGGCTTAGGGTCAACTGAACACGCTTAGCGAAAGGAATCCTTGAAGG CCCTGAAGCCTTCGATCGGCTAACCTGGGACCCTGGTGAGAGAGTGTCGT TTTTAGTATAGGAGCAGAATTTACTACCGCCAAGGAGAGCGGCGTCTCCG CGGAAGAGCGGGATTGACGAGCGAGACCGGGTGCAGGAGCGGAACGTCGG AGAGAACAATACAGGAGTTGAAGTGGCGCTAAGGTTGAGCGGCTCCTCCT GAAAGCTCGGAACGTGAGTAAAATAAAATGACGTTCCCAACTGGTCTTGA TTTCAGGAAATACTCTGACGAAGAGCTAACGGCAATGCTTGTGGAAGCTG TAGAAGCATCCAAGCATGCACGAAAGCGTGGCGGAGTAATGGGAATCGTT GCTGCTCATCGTCTCAAACAAATGAGAACACTACTCATGTACGAAGAGCT AGCGACCTGGAGAAGAGATAATGGCTTTGATCGAGTTGAAGATGTCGATC ATCGCTCACTTCCGCCCACCCCGGAGCAATACTATGCCGGCTTGTGGTTA GAGGTGAATGCGTTGAAAGATGCAATTTCGATGCCGCTCCAGCTCTTGAA ACTCTTCAACGCAATTGAACAAGATACATTGAGTGATGAGAATACGCAAC TCTCAAGCGGTGCGTGGAGACGCGGGACCGCGACGACGCGCACAGGTGAC TGTCCTGAAGTCAGCACTGTACAGCAATGTAGCTCCATCCCGAAAACTCC CGAACCGCCGCCAGATGTATGTGTTAATTTGGAGAACAACGAGGATGAGA TGGACCAGGAATGGAGGAACTCACATCATCATCAACTAGTACGGGTCTCA ACACGCCCGGACAGCTAAGTCCCCCGAACGAGGGGTAGCAGGAGAACTGG AAGAATAATCGCCGACGGCATTTTGACCCGCAGGCGTGAATTCAGAATCA GGGGAAGAACCGTCACCCCGGAACGAGCGACGAGGATGGTAACGGCTGCA GACATCCCTTGGCAGCTGCTGCCCCGCCAAAACGAAGCACAAGACATCAG CGAACTGAACAAGCCGTTCGACCCCGGTGGAAGGGGAAGAAGGCCCGCCT TGGAACGCGGCTGTACCTCTACCTTTCTTTCCTGGGGTGAAGCTGTGAGG CTTCTTGTCTGTCTGGGGCAAGGCTGGAGGCTTCGTGTCCGTTTTCCCTG CCCTGTGTGTGTGTTTTCCGAACTTGTATTTTCCCTTTCACAGGTGAATC TTATCAGCAAGATGTTTTCTCGAGACGCGAACAAGTGATGTATGCAACCC GGAGGACAAGCGTTGTCTCGCCTACTACCCTATCTGAAGATGGCGAGGAC AAGCAATGCCTGGTTTGGTCGTAGCGCAAACACTCTAGGTAGAGCAGCTG ATCTGGTCGTCGTGTAGAACGCTTGTGATTTTTTTACCTACGAGCCATAT TTTATACTGAAATGAGTACGTGGACATTAAACCCAAGACAATGATGTTGA AATTTGCAAACAGCAGTATAGCAAATTCTCATTTTGTTACTGTAGCGCAG TAGTAATTTCGTGTTAGCTCGTCTGAAGAAAACTGAGTAGGTCATGAGAT TTTCATCGAGTCGGTACTGTAGCGATGCTGGAGAACTTGGCCATGGCCGC TAAATGAGCGAGCAATCGACTAAAAATATTTTTAATCTTGTAAGCTCGAG TAGCCCCAACTTGAAGAGCTAGATCTCTCGTAGCTAATTGAGAGACTGAA GATAAGGTACAAAGTATTTTGGGAATATTCAACTGTTGTACTTTCGCAAA TGAGCGTACCTCTCGTTAAACTAGTGTATCATTGGGTCCAATTGACTTAC GTCATTATAAGACCCTACCGTAGCGACTATACCACGTCAGTAGCATAAAA CATGGAACATTTGGACTAAATTCAAGTGACTTACGTAAGTGGAATAAATC ATGGAAAAGAAACTGAATAGTACGTCATCGGTTCGATTTACGTCGCGACA ATAAAGTTTTTTTTTATAATCTGGTAATAATGTACTGGACTTTGAATAGC ATTTACATGCAGTTTGGATGACAATATCCCAAGTCTAGCTATGGAGACAT ATACAATTATCTAGGGGGATGCATTATCTGAAATTAATCCCCTTCGTAGC TAGGGGATGTACTGTTTGAACTTTGAAGTCCTCTGAAGCCAGGGGATGTA CTGTTTGAACTTTGGATTTCTTCAGCCAGGGGGATATTAAACGTGGAGAC AAGAAGAAACGGTGGATCCTCGGGAGGGGGATGTTCGAGGAACGACTCAA CGACTTAATAACCGTTTCATCCACGTGGGAGTTGACAACAGTAGGTACGC GCTACTCATAGGGGGGATGGAGTTTATACCCCTTATATTAGCTAAAGTTA GCTTTGCCTACGTTCAGTGTGGTTGTACGTGTTGGTGTTCCTCCTTTCTT GGTTATTATTGTGTCTACCAAGCTCCAATGAGAGCAAAAGAAAAACACAA ACACACAAAAAAAAACGACAAAGAGAAAGGAACAGGAATAACAAAATACA CAGGTCAGAAAAGATAAACGAGGGGCATTCGATAGAGAGTTTGGCATAGT GCCGGCCGCGAGCCATCCGATACCCTcCCCAGCTCGCAACCATGCACCCA AAAAACGCGTAGCATCTACCACATTCCGTACTCTAAGGGTTTCAGTTTCA CTAACGGCACAATCGACGTCGCTGAGGGAGTCCTTGGGTTGGCCCAATCA ACGCGGTTCGAAAACGTATTAAGCTTGCTACAGTCACACCAGGTGCAACC TCAACCTTGTCCGCCTCTTCCGCTTCTCTCTTCTTCTGCCGTTGATTGGA CGCATTCTCTTCTTCCCTCACCCACGCGGCCATAAACCTACAAcCCCCTT CTTGTACGGTGTTGTACCATGCCCCAGGGTCGAGTGCGGCGGTTTTCCAG TCCCCCGTGACGCCAAATAGCCAAAGATCATCTGCCACGCAGTCCGTCCA CTCTTTCTCCTTccCCCCCGGTCCACGTTTCCCCGCGTTCTCGAGCTCTT CCGACATGACCCTCTTGGGTAACCTGTGGTCACCCATGCGGAGTAGCGCC CCCGCCCACAACAACCTCCTCGTGCATGATTCTATCCTTGTACCCCTACT GTTGTTGTACTATTAGGCCGGGGTGTATTCACCGCCGGGTTTGCACCGCC CAGGCCATTAATTAATATGCGCCTCTCTTTCCAACACCCACTATTGGTAT GAAGTGGGCATGTTGAAAGTACCGGCGTACACCCTTGCCACTGAGAAATT ACGGTGACACAACAAGTCAGTCATAGACCTGTCAAATGCCAATCCCGCTC GTGGTCACAAAGAGGTACGAAGGTCAACGGGCTACATCGTGGTGGCAACC CGTTACTCAAACCAACAGGGATCCAAATCGCGACAAAACCCTTGCCAGGT CTAACCAACCGAGAACATCGGAAACTTAGTACTGAGTATATAGTACTGTT TGTATCGTTGTTTACTGAGCAGCTGAATGTGCTGGTTTCCTTCGGACAAC TTGTTTTTTTCTAACAAGCATATCATAGCTCTGTAGAGCCAGAGGAAGAG CGAGAGCCTACAGAAGAAAGTCAAGCAGTAGGACTGCGGTGTAAACACGC CGAAGAGCTCGGAGCTTAGACTAGATGTCGTATTCCTCCAGGGATGGAGG CAATTGGCAGTTGTAGTATGTCTTTATAGAGGTCCCTCCGCATCGGAATG CTCGTAATACCGAAAACGTTATCGCACGTCGTGTCTCACGTCGTGTCTCA ACCCATTCTTTTGATATCTGACCGCAGAGAAGAAGACTACAAAGGTCATT GGCCCTGGAAGCTCGAAGACATCGAGGTTCGTTTTACCCCTGTCCTGTCT ACCTGTTTCAATTCCTGCCCCTCCCCACGCCCCGGCGTCCGCCCTCTTGA TATGATATATCCAGTAGCTGGGACATGCGTATGCGTAGGACATAGTCTAG CTCTACCATGAGCCTTGTGGCGTGTTAAATGTCCTAGGCTTCACGACTGC TGTACGTCATCAGTAAGACCCCAGTCGCCGGGGTGGTTCAGTTGGTAACC TCGAAACCTTCTGACGTTGGGACGTGAGTTCGAATCCCGGTGCAGTCACA TGAACTGGGATTTTTCCTCACAAAAAAATAAAAAATAAAAAATGGAAATA AAATGTCCAACAAGTGGAGTACAATTAATTCGTTAGTACACAAAAATTCG ACGTCACGATCGACGAGGGAAAGGAACAGCTGAATCCTTCTCGAGAGAAA AATGAAGGCAAGCACCGCAGAAAGAAGGTGGATGAGAAATCCTGTGTGAC CTTCCTCTTGTGTGACCCCGGCTGGTACGTCCACAAGCCTGACATCCAGA ATAAATGGGAAGACAAAACACACATTATCTAAAGTACAATTTTGAGAGAT AATTCGGTAATGTTTCGAAGTACGCCAAGCGTCGTCTCAGCGCCTCGCTC GACACACCGGTGCGCCACGCATCTGCAGAGTTTGCGCGACAACTATCAAT CTGTATGCCCGAACCTTTTCATTCAAAATACTATGGCCAGTCTCGGTTGC TCTCACGACATGTTTTGCGGTAAAAGTGCAGTTGCTCTATCGCCTGAAGC CTTACGCTTTTCGTGGGCCCGGGGACGATGCTGATAAAATGGACTCATCG TTGTTCAACCCGTGCGCGCAGGCGAGCTTCGAATCTATCGAATCCGAGCT GACTCTGGAAGAACCGCGATCGAGTAGCACCGTAGGGCTATCTTGGGAGC GTATGCTGGAAGAGATGGGATGCAAGCGTGCTTCCCTAACGGGGGAAGGA GCATCGTTGGATTCCCGCAGCACCGACGATAAAAGGATAACCTGGACCAA GGAGGGTCTCGGAGGATGTGCCAACACGCGCACGACAAGAAGACAGGGGG AGCGACAGTCCGCCTGGGCAGCGTTCATTGCCCCGGTTGCCGCAATGCCT AATCTTCGCATCAAGAGCGATTCCGCTGTGACCCGAGTCATCATCGAGCG AGGGCGAGCAGTAGGGATCGAGTTGTTGGAGTACTTTCCAACCTGGAGGG GCGGTCGCAGCCGGCTGCGTCAACTAAGACTGGCGAACGAGGTGGCGGAG ATCGTGCTTTGCTCCGGCGTGTTCCGCACGCCCAAACTCCTGATGTTGTC TGGTGTAGGCCCGAAGGAGCACCTTGAGGATAAGGGAATACCCGTGTTGG TGAATATGCCTCATGTGAGTCAGAGGTCCACGTTACCCTCGCTTCCCTGA TGTTCCCCCCGTTTGTCGTGAAGGCGACTGTGCTGAATAGTAACGCCAAC GCCAACCGGGCTGGGGACAGTTCAGATCTCTCGCCATGTACCGTGTCGGC ATTCCTCTCATGTAGCCCTAAGAAACTTGCCTTGATTACCGTTCTGTTTC TGACGAAAAATCCCGATGACTGTGGGCTTTGGCCGGTCTGTGAGCCCGTC GCTGCTGCAAATATCCTACAGTACAGCGTTTGCTTTTGCCGCGATTCTTC CCGTTCGCCTTCTTCTTGCCCTGGTACCCCCCATCTTCCACTACCGGTGC GACCGCTGGAGCAGGTGGGTGAAAATCTTCAAGATCACTTACTTGGCACC TCCATGCACTTGAGCAAGACGCTAATGTCACCCGCCGACTTCGCCGAGGA CGGCCTACACGGGATGGCGTACATTCGCTGCCCGCTGCGCCCGGAGTCTG GAGATTCGGAGATTGCCATAGACACTGGCGGGTCAAAAACAAACGAAGAT GCTTCCTCGCTGGTGCTGGGGTTCATGTTCGCGGATGGCGGGATCATACC TTCTCAAATCGTATCCATCATGCGGTTGACTTTCACCCAGTCGGGCTTCC TGGGGGCTATGGCTCGCGAGGTTATATTTTTCCTGGTCTGGTTACTCGTG CGCTTGACCCCAATAAGCTGGATTGCCAAGCACAGTCTTTCGGCTAATGT CGCGCTCACAACGGTCAAGAGTCGGGGAACAGTGCGCCTGGCGTCGGGGG ATCCCACCTGTCCCCCCGTGATCGATCCGGCTTACCTTTCTCACCCCGAT GACGAGCAAGCTATTGCGGCAGCTTGGCGTACTCTGCGACGGGCAAAGAC AGAGACGGCGACGGGGAAGGCGGTTCTGGGCTACGAGATATCGCCAGGGA AGGGGTGAGAGAGTGGGGTTGCCAGACAAGTCAGTTGGTCGTGCGATTTA TTGCCGATGTAGTGGGTTGCTTGGGCCATCCGTTTCGTTGCGAGGCCATC TTGTAAGTAGGCACTCTTCCCCACCCCCTGCCGACCACCCGAGATCGAAA TGACGGCCCTACGAGGTATTTCGCTTCCGTGTCGGGGTCATGGACCCTTT TCCCTTCACACTCGCTGTGCGTTTTGACCTGGTCCCTTTTTGTCAGATTC AACAACGGGCGCGACGACAAGAGCTTTCTGACCTTTTTCAAGCATACCGC CTTCAGTTTCTTCCACCCAGTTGGAACGTGCCGAATGGGGCAAGGACCGG AAGATTCGGTCGTCTCTGCTAACAGCCTTAGGTGAGAGTGACAATCTTTC GAGCCAGCGACGTGATGCTTACTCGCTGCTGAGAAGATCAGCATTCGGTT GATGTAAGTAAAATAGTTTTCTCATTAAGAGTACTATGTAGTGCCGCGGG TAAGTGCTCTTGCAGCGAGAGTCACGACGGCTGCGATCGTACCATTTCCT CATTCGTCAGCTGGTCCAGCTTTCTACGGGTAGAGTAGCTCGCGCGTACG GGGAAACGCTGCGTTATTAATGTACTGCAGGCATCCAACCGGCCAGATAC GTACGTCTTGGGGTAGCAGAGCGTTTCGTAGACAACCATTTGCGCGCAGG AGCAGTGCTGGTGTGGAGTGCATGACCTTCCGCAAAGACCGCGATTCTTG AAACCCCCATCTACCCCCCCCTACCCCTCATATCCCCGGTTATTGCAGGG TACATGGCGTGTCGGGATTGAGAGTAGCCGACGCATCGGTAGCTCCGAGA ATCCCGTCGGTTCCGACGCAGGCTATGGCCATGATGATCGGAGACAGGGC GGCGGCGTTGGTTCTCGGCGATATGGCCACGAAGAACCAGGTTCAGGTGA GACGGCAGTGCACACGTACAAGCAAGATTTTGACCGAAGGCTTGAGCTAG
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig119:267658..276507+

>mRNA_A-nodosum_M_contig119.25.1 ID=mRNA_A-nodosum_M_contig119.25.1|Name=mRNA_A-nodosum_M_contig119.25.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1911bp|location=Sequence derived from alignment at A-nodosum_M_contig119:267658..276507+ (Ascophyllum nodosum dioecious)
GCCCACTCTGTCATAATTCAATTACATCCAATCGAGGGCAGGACGACGGG
GTTACACACAGGCATGACTGAACCGATGGAAGTCGATACTGTGGACTGTG
ATTTTCTTCTTGTGGGCGCTGGCTCGAGCGGATGCGTGCTGGCTTCCAGA
CTTGTACGACGGGGTCTGAAGGTGTTACTCGTAGAAAAGGGCACGACTGA
TGTTGGGAAGCTCGACAAGCTTGTGCGCAGGCCCTCGGAGTGGATGGCGG
CGGCCACTAGTAGGAGCCCGCTGGTGGATCATTTTGTGACCGTTCCTCAG
GCGAATCTATTCAACCGGCGAATGCACGCCATGCGAGGATGTGGAGGTGG
AGGTTCTAGCAACATCAACGCTGGTCTGTACTGTCGAGGGAGAGAAGAAG
ACTACAAAGGTCATTGGCCCTGGAAGCTCGAAGACATCGAGGCGAGCTTC
GAATCTATCGAATCCGAGCTGACTCTGGAAGAACCGCGATCGAGTAGCAC
CGTAGGGCTATCTTGGGAGCGTATGCTGGAAGAGATGGGATGCAAGCGTG
CTTCCCTAACGGGGGAAGGAGCATCGTTGGATTCCCGCAGCACCGACGAT
AAAAGGATAACCTGGACCAAGGAGGGTCTCGGAGGATGTGCCAACACGCG
CACGACAAGAAGACAGGGGGAGCGACAGTCCGCCTGGGCAGCGTTCATTG
CCCCGGTTGCCGCAATGCCTAATCTTCGCATCAAGAGCGATTCCGCTGTG
ACCCGAGTCATCATCGAGCGAGGGCGAGCAGTAGGGATCGAGTTGTTGGA
GTACTTTCCAACCTGGAGGGGCGGTCGCAGCCGGCTGCGTCAACTAAGAC
TGGCGAACGAGGTGGCGGAGATCGTGCTTTGCTCCGGCGTGTTCCGCACG
CCCAAACTCCTGATGTTGTCTGGTGTAGGCCCGAAGGAGCACCTTGAGGA
TAAGGGAATACCCGTGTTGGTGAATATGCCTCATGTGGGTGAAAATCTTC
AAGATCACTTACTTGGCACCTCCATGCACTTGAGCAAGACGCTAATGTCA
CCCGCCGACTTCGCCGAGGACGGCCTACACGGGATGGCGTACATTCGCTG
CCCGCTGCGCCCGGAGTCTGGAGATTCGGAGATTGCCATAGACACTGGCG
GGTCAAAAACAAACGAAGATGCTTCCTCGCTGGTGCTGGGGTTCATGTTC
GCGGATGGCGGGATCATACCTTCTCAAATCGTATCCATCATGCGGTTGAC
TTTCACCCAGTCGGGCTTCCTGGGGGCTATGGCTCGCGAGGTTATATTTT
TCCTGGTCTGGTTACTCGTGCGCTTGACCCCAATAAGCTGGATTGCCAAG
CACAGTCTTTCGGCTAATGTCGCGCTCACAACGGTCAAGAGTCGGGGAAC
AGTGCGCCTGGCGTCGGGGGATCCCACCTGTCCCCCCGTGATCGATCCGG
CTTACCTTTCTCACCCCGATGACGAGCAAGCTATTGCGGCAGCTTGGCGT
ACTCTGCGACGGGCAAAGACAGAGACGGCGACGGGGAAGGCGGTTCTGGG
CTACGAGATATCGCCAGGGAAGGGATTCAACAACGGGCGCGACGACAAGA
GCTTTCTGACCTTTTTCAAGCATACCGCCTTCAGTTTCTTCCACCCAGTT
GGAACGTGCCGAATGGGGCAAGGACCGGAAGATTCGGTCGTCTCTGCTAA
CAGCCTTAGGGTACATGGCGTGTCGGGATTGAGAGTAGCCGACGCATCGG
TAGCTCCGAGAATCCCGTCGGTTCCGACGCAGGCTATGGCCATGATGATC
GGAGACAGGGCGGCGGCGTTGGTTCTCGGCGATATGGCCACGAAGAACCA
GGTTCAGGTGAGACGGCAGTGCACACGTACAAGCAAGATTTTGACCGAAG
GCTTGAGCTAG
back to top