mRNA_A-nodosum_M_contig1189.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1189.3.1
Unique NamemRNA_A-nodosum_M_contig1189.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1189.3.1 vs. uniprot
Match: D7G3X5_ECTSI (VWFD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3X5_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 5.150e-13
Identity = 53/136 (38.97%), Postives = 73/136 (53.68%), Query Frame = 1 
Query:    4 ADSVFYSDVISLTCPSPLTITLEWSTDNSDFDMEITEPDGSSWYAWDIG-TYGFGSGDVTDGFGPEVWTVL----PGNPEAVGTYT--VRLYFLNAPGDTEWTLTARLNGEIEWIETGIY----EPNNFGFSYSYY 378
            AD+ F  DV +  C   LTITLEW+ + SD D+ + EP G   Y  + G   GF   D T GFGPE + +     P   + +G Y   V+LY  +A  +T W LTAR++GE+ WIE G +    + + F  S S Y
Sbjct:  424 ADTAFALDVSNSACVPSLTITLEWTGETSDVDLYVVEPGGEVVYFSNRGGDVGFLDNDDTYGFGPENYIIDSALDPAASQVLGEYETYVKLYSGDAATET-WRLTARVSGEVVWIEEGDFISSTQSDTFAVSLSVY 558
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BLAST of mRNA_A-nodosum_M_contig1189.3.1 vs. uniprot
Match: D7G5D6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5D6_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 1.100e-12
Identity = 53/136 (38.97%), Postives = 73/136 (53.68%), Query Frame = 1 
Query:    4 ADSVFYSDVISLTCPSPLTITLEWSTDNSDFDMEITEPDGSSWYAWDIG-TYGFGSGDVTDGFGPEVWTVL----PGNPEAVGTYT--VRLYFLNAPGDTEWTLTARLNGEIEWIETGIY----EPNNFGFSYSYY 378
            AD+ F  DV +  C   LTITLEW+ + SD D+ + EP G   Y  + G   GF   D T GFGPE + +     P   + +G Y   V+LY  +A  +T W LTAR++GE+ WIE G +    + + F  S S Y
Sbjct:  298 ADTAFALDVSNSACVPSLTITLEWTGEISDVDLYVVEPGGEVVYFSNRGGDVGFLDNDDTYGFGPENYIIDSALDPAASQVLGEYETYVKLYSGDAATET-WRLTARVSGEVVWIEEGDFISSTQSDTFAVSLSVY 432
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1189.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G3X5_ECTSI5.150e-1338.97VWFD domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G5D6_ECTSI1.100e-1238.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1189contigA-nodosum_M_contig1189:69101..70175 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G3X5
PFAMsAMOP,SRCR,VWD,WSC
Model size663
Max annot lvl2759|Eukaryota
KEGG koko:K22017
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.72e-05
EggNOG OGsKOG4291@1|root,KOG4291@2759|Eukaryota
DescriptionSushi, nidogen and EGF-like
Cds size348
COG categoryKLT
BRITEko00000,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866602.1900258-UTR-A-nodosum_M_contig1189:69100..691991680866602.1900258-UTR-A-nodosum_M_contig1189:69100..69199Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1189 69101..69199 +
1680866602.2252119-UTR-A-nodosum_M_contig1189:69959..701751680866602.2252119-UTR-A-nodosum_M_contig1189:69959..70175Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1189 69960..70175 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866602.2016504-CDS-A-nodosum_M_contig1189:69199..692501680866602.2016504-CDS-A-nodosum_M_contig1189:69199..69250Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1189 69200..69250 +
1680866602.2144432-CDS-A-nodosum_M_contig1189:69662..699591680866602.2144432-CDS-A-nodosum_M_contig1189:69662..69959Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1189 69663..69959 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1189.3.1prot_A-nodosum_M_contig1189.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1189 69200..69959 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1189.3.1

>prot_A-nodosum_M_contig1189.3.1 ID=prot_A-nodosum_M_contig1189.3.1|Name=mRNA_A-nodosum_M_contig1189.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=116bp
MEITEPDGSSWYAWDIGTYGFGSGDVTDGFGPEVWTVLPGNPEAVGTYTV
RLYFLNAPGDTEWTLTARLNGEIEWIETGIYEPNNFGFSYSYYSDDSFSS
DLFSVTLDSVDTEEC*
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mRNA from alignment at A-nodosum_M_contig1189:69101..70175+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1189.3.1 ID=mRNA_A-nodosum_M_contig1189.3.1|Name=mRNA_A-nodosum_M_contig1189.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1075bp|location=Sequence derived from alignment at A-nodosum_M_contig1189:69101..70175+ (Ascophyllum nodosum dioecious)
TACGCAGATAGCGTTTTCTACTCAGACGTGATCAGCCTTACTTGCCCTAG
CCCCCTCACAATAACCTTAGAGTGGAGCACAGACAACAGCGATTTCGACA
TGGAAATCACCGAGCCAGACGGGTCTAGCTGGTACGCCTGGGACATTGGG
GTAAGTTCTTGTTCAGCATTCGGGGCGACATTTGACGTGACAGGCAACTC
TACGAAAGCGCAAACATTTTTGTACGGTGTTATTTTGACCGATACAAGAT
TTGACCGACTTGTTCTTCCCTGCATATTTCGTGCAGTCGTGGAGTTAAGA
CCGAAAATTATTTTTCGGTAACTGTCGCCGCTCGTTGACTTTTGTCCAAA
CTAGTAACTACTTCACGCCCAGACAATCCCTGCATATTTTGTGTATTGGT
GAAGTTAGGGTCGAAAGTAATGATTGCTTGACGTGGCCGCACGTTGACTG
CTGTCCAAAATAAAGCCACTCTCCCGCCCAGATGACACCGCAAAGCTCCG
ATACTGCATGTCTCGTAAGCCCCCACACACGTTCACACTCCTCAACTCTA
TAAACCATTCAGACCTATGGATTTGGATCCGGGGACGTCACCGATGGGTT
CGGACCCGAGGTCTGGACTGTGCTTCCCGGCAACCCCGAAGCGGTCGGAA
CGTACACGGTGCGCCTGTACTTCTTGAATGCCCCTGGAGATACCGAGTGG
ACCCTCACCGCGCGTTTGAATGGCGAGATAGAGTGGATCGAGACCGGCAT
CTACGAGCCGAATAATTTTGGCTTCTCATACAGTTACTACTCGGACGACT
CATTCTCAAGCGACCTATTCTCTGTCACTCTCGACTCCGTGGACACGGAG
GAATGCTGATCTAAGAGGGCGAATGGATTTGTAAAAATCTCACTATAAAA
AATTGTCCAACACGCCATAAACAATAAGGAGGGGGGGGGAAATTGGGCTG
GTAAAGTATCGGTATGCCGTGACATGAGGGTCTGGGGAGATGCACTCCTC
ATCCCGTAGAAATCGCGCCTTCCACTCTTCAAAGGGTCTCAAGCAAAGCT
ACAAACGCTGTTTGGAAGTAGTGGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1189:69101..70175+

>mRNA_A-nodosum_M_contig1189.3.1 ID=mRNA_A-nodosum_M_contig1189.3.1|Name=mRNA_A-nodosum_M_contig1189.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=348bp|location=Sequence derived from alignment at A-nodosum_M_contig1189:69101..70175+ (Ascophyllum nodosum dioecious)
ATGGAAATCACCGAGCCAGACGGGTCTAGCTGGTACGCCTGGGACATTGG
GACCTATGGATTTGGATCCGGGGACGTCACCGATGGGTTCGGACCCGAGG
TCTGGACTGTGCTTCCCGGCAACCCCGAAGCGGTCGGAACGTACACGGTG
CGCCTGTACTTCTTGAATGCCCCTGGAGATACCGAGTGGACCCTCACCGC
GCGTTTGAATGGCGAGATAGAGTGGATCGAGACCGGCATCTACGAGCCGA
ATAATTTTGGCTTCTCATACAGTTACTACTCGGACGACTCATTCTCAAGC
GACCTATTCTCTGTCACTCTCGACTCCGTGGACACGGAGGAATGCTGA
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