mRNA_A-nodosum_M_contig1183.20.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1183.20.1
Unique NamemRNA_A-nodosum_M_contig1183.20.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1183.20.1 vs. uniprot
Match: A0A0U5ACT6_9PHAE (Cytochrome oxidase subunit 1 (Fragment) n=1 Tax=Stschapovia flagellaris TaxID=243166 RepID=A0A0U5ACT6_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 1.220e-37
Identity = 56/65 (86.15%), Postives = 63/65 (96.92%), Query Frame = 1 
Query:    1 MPRRIPDYPDSYAGWNGIASFGSILSSVASLFFFYVVYLTLTQGSIEEANPWVKGRGLAFPLLPR 195
            MPRRIPDYPDSYAGWNG+ASFGSILSS+ASL FF++VYLTLT+GS+EEANPW+KGRGLAFP LPR
Sbjct:   18 MPRRIPDYPDSYAGWNGLASFGSILSSIASLLFFFIVYLTLTKGSVEEANPWIKGRGLAFPALPR 82
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BLAST of mRNA_A-nodosum_M_contig1183.20.1 vs. uniprot
Match: A0A0S2I710_SACJA (Cytochrome c oxidase subunit 1 n=14 Tax=Saccharina japonica TaxID=88149 RepID=A0A0S2I710_SACJA)

HSP 1 Score: 133 bits (335), Expect = 3.580e-35
Identity = 58/68 (85.29%), Postives = 67/68 (98.53%), Query Frame = 1 
Query:    1 MPRRIPDYPDSYAGWNGIASFGSILSSVASLFFFYVVYLTLTQGSIEEANPWVKGRGLAFPLLPRKIS 204
            MPRRIPDYPDSYAGWNG+ASFGSILSS+ASLFFF+VVY+TLT+GS+EE+NPWVKGRGLAFP+LPR+ S
Sbjct:  461 MPRRIPDYPDSYAGWNGLASFGSILSSIASLFFFFVVYITLTRGSVEESNPWVKGRGLAFPVLPRRSS 528
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BLAST of mRNA_A-nodosum_M_contig1183.20.1 vs. uniprot
Match: E6ZES6_ECTSI (Cytochrome c oxidase subunit 1 n=691 Tax=Phaeophyceae TaxID=2870 RepID=E6ZES6_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 9.030e-33
Identity = 57/63 (90.48%), Postives = 62/63 (98.41%), Query Frame = 1 
Query:    1 MPRRIPDYPDSYAGWNGIASFGSILSSVASLFFFYVVYLTLTQGSIEEANPWVKGRGLAFPLL 189
            MPRRIPDYPDSYAGWNGIASFGSILSS+ASLFFF+VVY+TLT+GS+EEANPWVKGRGLAFP L
Sbjct:  462 MPRRIPDYPDSYAGWNGIASFGSILSSLASLFFFFVVYVTLTKGSVEEANPWVKGRGLAFPAL 524
[Close]
BLAST of mRNA_A-nodosum_M_contig1183.20.1 vs. uniprot
Match: A0A0U4ZTN0_9PHAE (Cytochrome c oxidase subunit 1 (Fragment) n=8 Tax=Phaeophyceae TaxID=2870 RepID=A0A0U4ZTN0_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 1.120e-32
Identity = 55/65 (84.62%), Postives = 62/65 (95.38%), Query Frame = 1 
Query:    1 MPRRIPDYPDSYAGWNGIASFGSILSSVASLFFFYVVYLTLTQGSIEEANPWVKGRGLAFPLLPR 195
            MPRRIPDYPDSYAGWNG+ASFGSILSS+ASLFFF+VVYLTLTQGS+E++NPWV GRGLAFP L +
Sbjct:  358 MPRRIPDYPDSYAGWNGVASFGSILSSIASLFFFFVVYLTLTQGSVEKSNPWVSGRGLAFPSLAK 422
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BLAST of mRNA_A-nodosum_M_contig1183.20.1 vs. uniprot
Match: A0A8E8PDM6_9PHAE (Cytochrome c oxidase subunit 1 n=2 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E8PDM6_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 2.290e-31
Identity = 54/64 (84.38%), Postives = 61/64 (95.31%), Query Frame = 1 
Query:    1 MPRRIPDYPDSYAGWNGIASFGSILSSVASLFFFYVVYLTLTQGSIEEANPWVKGRGLAFPLLP 192
            MPRRIPDYPD+YAGWN IASFGSILSS+ASLFFF+VVY+TLTQGS+EE+NPWVKGRGLAF  +P
Sbjct:  454 MPRRIPDYPDAYAGWNSIASFGSILSSIASLFFFFVVYITLTQGSVEESNPWVKGRGLAFSPIP 517
[Close]
BLAST of mRNA_A-nodosum_M_contig1183.20.1 vs. uniprot
Match: A0A6N3IW01_9PHAE (Cytochrome c oxidase subunit 1 (Fragment) n=2 Tax=Ecklonia arborea TaxID=1849970 RepID=A0A6N3IW01_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 2.580e-31
Identity = 51/66 (77.27%), Postives = 59/66 (89.39%), Query Frame = 1 
Query:    1 MPRRIPDYPDSYAGWNGIASFGSILSSVASLFFFYVVYLTLTQGSIEEANPWVKGRGLAFPLLPRK 198
            MPRRIPDYPD YAGWNG+ASFGSILSSVASL FF++VY+TLT+G +E +NPWVK R  AFPLLPR+
Sbjct:  139 MPRRIPDYPDCYAGWNGLASFGSILSSVASLLFFFIVYITLTRGYVEGSNPWVKDRKFAFPLLPRR 204
[Close]
BLAST of mRNA_A-nodosum_M_contig1183.20.1 vs. uniprot
Match: A0A0U1XAH8_SARHM (Cytochrome c oxidase subunit 1 n=118 Tax=Phaeophyceae TaxID=2870 RepID=A0A0U1XAH8_SARHM)

HSP 1 Score: 122 bits (305), Expect = 6.100e-31
Identity = 53/66 (80.30%), Postives = 60/66 (90.91%), Query Frame = 1 
Query:    1 MPRRIPDYPDSYAGWNGIASFGSILSSVASLFFFYVVYLTLTQGSIEEANPWVKGRGLAFPLLPRK 198
            MPRRIPDYPDSYAGWN +ASFGSILSSVASLFFFY+VYLTLT+G +EE+NPWVK RG+AFP +  K
Sbjct:  461 MPRRIPDYPDSYAGWNSVASFGSILSSVASLFFFYIVYLTLTEGHLEESNPWVKNRGIAFPTIESK 526
[Close]
BLAST of mRNA_A-nodosum_M_contig1183.20.1 vs. uniprot
Match: A0A5K7TLP3_9PHAE (Cytochrome c oxidase subunit 1 n=55 Tax=Phaeophyceae TaxID=2870 RepID=A0A5K7TLP3_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 2.020e-29
Identity = 51/67 (76.12%), Postives = 61/67 (91.04%), Query Frame = 1 
Query:    1 MPRRIPDYPDSYAGWNGIASFGSILSSVASLFFFYVVYLTLTQGSIEEANPWVKGRGLAFPLLPRKI 201
            MPRRIPDYPDS+ GWN +ASFGSILSS+AS+FFFYVVY+TLT+GS+EE+NPWVKGRGLAF +   K+
Sbjct:  466 MPRRIPDYPDSFGGWNAVASFGSILSSLASIFFFYVVYVTLTRGSVEESNPWVKGRGLAFMIPTSKL 532
[Close]
BLAST of mRNA_A-nodosum_M_contig1183.20.1 vs. uniprot
Match: A0A8F0K0Q8_9PHAE (Cytochrome c oxidase subunit 1 n=5 Tax=Laminariales TaxID=2886 RepID=A0A8F0K0Q8_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 2.260e-29
Identity = 52/68 (76.47%), Postives = 62/68 (91.18%), Query Frame = 1 
Query:    1 MPRRIPDYPDSYAGWNGIASFGSILSSVASLFFFYVVYLTLTQGSIEEANPWVKGRGLAFPLLPRKIS 204
            MPRR+PDYPDS+ GWN +ASFGSILSSVASLFFF+VVY+TLTQGS+ ++N WV+GRGLAFP LPR+ S
Sbjct:  461 MPRRVPDYPDSFFGWNALASFGSILSSVASLFFFFVVYITLTQGSVVKSNYWVEGRGLAFPPLPRRSS 528
[Close]
BLAST of mRNA_A-nodosum_M_contig1183.20.1 vs. uniprot
Match: A0A1L6KY02_9PHAE (Cytochrome c oxidase subunit 1 n=1 Tax=Sargassum fluitans TaxID=143163 RepID=A0A1L6KY02_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 1.410e-19
Identity = 39/66 (59.09%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:    1 MPRRIPDYPDSYAGWNGIASFGSILSSVASLFFFYVVYLTLTQGSIEEANPWVKGRGLAFPLLPRK 198
            MPRRIPDYPDSYAGWN +AS              YVVYLTLTQG +E++NPWV+ RG+AFP++  K
Sbjct:  461 MPRRIPDYPDSYAGWNSVASXXXXXXXXXXXXXXYVVYLTLTQGHLEDSNPWVENRGVAFPVIQSK 526
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1183.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0U5ACT6_9PHAE1.220e-3786.15Cytochrome oxidase subunit 1 (Fragment) n=1 Tax=St... [more]
A0A0S2I710_SACJA3.580e-3585.29Cytochrome c oxidase subunit 1 n=14 Tax=Saccharina... [more]
E6ZES6_ECTSI9.030e-3390.48Cytochrome c oxidase subunit 1 n=691 Tax=Phaeophyc... [more]
A0A0U4ZTN0_9PHAE1.120e-3284.62Cytochrome c oxidase subunit 1 (Fragment) n=8 Tax=... [more]
A0A8E8PDM6_9PHAE2.290e-3184.38Cytochrome c oxidase subunit 1 n=2 Tax=Phaeophycea... [more]
A0A6N3IW01_9PHAE2.580e-3177.27Cytochrome c oxidase subunit 1 (Fragment) n=2 Tax=... [more]
A0A0U1XAH8_SARHM6.100e-3180.30Cytochrome c oxidase subunit 1 n=118 Tax=Phaeophyc... [more]
A0A5K7TLP3_9PHAE2.020e-2976.12Cytochrome c oxidase subunit 1 n=55 Tax=Phaeophyce... [more]
A0A8F0K0Q8_9PHAE2.260e-2976.47Cytochrome c oxidase subunit 1 n=5 Tax=Laminariale... [more]
A0A1L6KY02_9PHAE1.410e-1959.09Cytochrome c oxidase subunit 1 n=1 Tax=Sargassum f... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1183contigA-nodosum_M_contig1183:248137..248352 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog70448.Q0P3F1
PFAMsCOX1
Model size216
Max annot lvl3041|Chlorophyta
KEGG koko:K02256
KEGG TC3.D.4.11,3.D.4.7,3.D.4.8
KEGG Pathwayko00190,ko01100,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04260,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00154
Hectar predicted targeting categorysignal anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0016020,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464
Exons1
Evalue1.22e-17
EggNOG OGsCOG0843@1|root,KOG4769@2759|Eukaryota,37QZZ@33090|Viridiplantae,34JUG@3041|Chlorophyta
EC1.9.3.1
DescriptionCytochrome C and Quinol oxidase polypeptide I
Cds size216
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866599.855427-CDS-A-nodosum_M_contig1183:248136..2483521680866599.855427-CDS-A-nodosum_M_contig1183:248136..248352Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1183 248137..248352 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1183.20.1prot_A-nodosum_M_contig1183.20.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1183 248137..248352 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1183.20.1

>prot_A-nodosum_M_contig1183.20.1 ID=prot_A-nodosum_M_contig1183.20.1|Name=mRNA_A-nodosum_M_contig1183.20.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=72bp
MPRRIPDYPDSYAGWNGIASFGSILSSVASLFFFYVVYLTLTQGSIEEAN
PWVKGRGLAFPLLPRKISGSS*
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mRNA from alignment at A-nodosum_M_contig1183:248137..248352+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1183.20.1 ID=mRNA_A-nodosum_M_contig1183.20.1|Name=mRNA_A-nodosum_M_contig1183.20.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=216bp|location=Sequence derived from alignment at A-nodosum_M_contig1183:248137..248352+ (Ascophyllum nodosum dioecious)
ATGCCTCGTCGTATTCCTGATTATCCGGACTCCTATGCTGGTTGGAACGG
TATTGCCTCTTTTGGATCAATACTATCTTCAGTAGCATCGTTATTTTTCT
TTTATGTTGTTTATTTAACTCTTACCCAAGGCTCAATAGAAGAGGCAAAC
CCTTGGGTTAAGGGTAGAGGTTTAGCGTTTCCATTATTACCGCGCAAAAT
TTCTGGAAGTAGTTAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1183:248137..248352+

>mRNA_A-nodosum_M_contig1183.20.1 ID=mRNA_A-nodosum_M_contig1183.20.1|Name=mRNA_A-nodosum_M_contig1183.20.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=216bp|location=Sequence derived from alignment at A-nodosum_M_contig1183:248137..248352+ (Ascophyllum nodosum dioecious)
ATGCCTCGTCGTATTCCTGATTATCCGGACTCCTATGCTGGTTGGAACGG
TATTGCCTCTTTTGGATCAATACTATCTTCAGTAGCATCGTTATTTTTCT
TTTATGTTGTTTATTTAACTCTTACCCAAGGCTCAATAGAAGAGGCAAAC
CCTTGGGTTAAGGGTAGAGGTTTAGCGTTTCCATTATTACCGCGCAAAAT
TTCTGGAAGTAGTTAA
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