mRNA_A-nodosum_M_contig11822.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig11822.3.1
Unique NamemRNA_A-nodosum_M_contig11822.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig11822.3.1 vs. uniprot
Match: A0A6H5K6T9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6T9_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 2.930e-12
Identity = 28/43 (65.12%), Postives = 33/43 (76.74%), Query Frame = 3 
Query:  108 GAVAMNARGEGVHLPKAECFTHTCRALWPGYGEMETYVVQALS 236
            G +AMNARG+GV L + ECFTH CRALWPG GE +  VV+A S
Sbjct:   56 GEMAMNARGQGVQLKREECFTHPCRALWPGSGESDASVVEAFS 98
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BLAST of mRNA_A-nodosum_M_contig11822.3.1 vs. uniprot
Match: A0A6H5JAI4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAI4_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 8.100e-11
Identity = 28/41 (68.29%), Postives = 33/41 (80.49%), Query Frame = 3 
Query:  108 GAVAMNARGEGVHLPKAECFTHTCRALWPGYGEMETYVVQA 230
            GA+AMNARG+GV L +AECFTH  RA+WPG  EME  VV+A
Sbjct:   56 GAMAMNARGKGVQLKRAECFTHAGRAVWPGNEEMEASVVEA 96
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BLAST of mRNA_A-nodosum_M_contig11822.3.1 vs. uniprot
Match: A0A6H5JH50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH50_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 1.150e-9
Identity = 28/42 (66.67%), Postives = 32/42 (76.19%), Query Frame = 3 
Query:  108 GAVAMNARGEGVHLPKAECFTHTCRALWPGYGEMETYVVQAL 233
            GA A+NARG GV LP+AECFT  CRAL PG GEM+  VV+A 
Sbjct:  190 GAEAVNARGAGVQLPRAECFTRACRALLPGSGEMDPLVVEAF 231
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BLAST of mRNA_A-nodosum_M_contig11822.3.1 vs. uniprot
Match: A0A6H5JXX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXX9_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 8.060e-9
Identity = 24/39 (61.54%), Postives = 29/39 (74.36%), Query Frame = 3 
Query:  108 GAVAMNARGEGVHLPKAECFTHTCRALWPGYGEMETYVV 224
            G +AMN RG+GV L +A+CFTH CRA+WPG  EME  V 
Sbjct:  121 GGMAMNTRGKGVQLKRADCFTHACRAVWPGNEEMEASVA 159
[Close]
BLAST of mRNA_A-nodosum_M_contig11822.3.1 vs. uniprot
Match: A0A6H5KUP8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUP8_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 2.970e-8
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 3 
Query:  108 GAVAMNARGEGVHLPKAECFTHTCRALWPGYGEME 212
            GA+AMNARG+GV L +AECFTH  RA+WPG  EME
Sbjct:  119 GAMAMNARGKGVQLKRAECFTHARRAVWPGNEEME 153
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig11822.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5K6T9_9PHAE2.930e-1265.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAI4_9PHAE8.100e-1168.29Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH50_9PHAE1.150e-966.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXX9_9PHAE8.060e-961.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUP8_9PHAE2.970e-871.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig11822contigA-nodosum_M_contig11822:9357..9810 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size301
Hectar predicted targeting categoryother localisation
Exons2
Cds size213
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866599.324064-UTR-A-nodosum_M_contig11822:9356..94441680866599.324064-UTR-A-nodosum_M_contig11822:9356..9444Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig11822 9357..9444 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866599.3351538-CDS-A-nodosum_M_contig11822:9444..96031680866599.3351538-CDS-A-nodosum_M_contig11822:9444..9603Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11822 9445..9603 +
1680866599.3489268-CDS-A-nodosum_M_contig11822:9756..98101680866599.3489268-CDS-A-nodosum_M_contig11822:9756..9810Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11822 9757..9810 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig11822.3.1prot_A-nodosum_M_contig11822.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig11822 9445..9810 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig11822.3.1

>prot_A-nodosum_M_contig11822.3.1 ID=prot_A-nodosum_M_contig11822.3.1|Name=mRNA_A-nodosum_M_contig11822.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=71bp
MFEVFVGRGCDERARRRRPSPESGVLHTHLPGIVAWLWRNGDLRGSGTLP
IRAVKKRKAFEDLVKDLRTGD
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mRNA from alignment at A-nodosum_M_contig11822:9357..9810+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig11822.3.1 ID=mRNA_A-nodosum_M_contig11822.3.1|Name=mRNA_A-nodosum_M_contig11822.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=454bp|location=Sequence derived from alignment at A-nodosum_M_contig11822:9357..9810+ (Ascophyllum nodosum dioecious)
ATGGACCTCCACGTGCTATTAACAGGTTGTTACCAATTATAACGGAGGCT
TTCTCCTCTAGAGCCTATATTATAAACCCGACTTAATTATGTTTGAAGTT
TTTGTGGGGCGCGGTTGCGATGAACGCGCGCGGCGAAGGCGTCCATCTCC
CGAAAGCGGAGTGCTTCACACACACTTGCCGGGCATTGTGGCCTGGCTAT
GGCGAAATGGAGACCTACGTGGTTCAGGCACTCTCCCTATAAGAGCAGTA
TGCATCCTCTGACGTTTTCCCCCTTGATTGGGTGAATGAATGCTCAGAAG
GTTCTAGAAGGTTCTGATGCGTTCAGGTTTTTCTTTAAAATACTGAACAG
TCCCTAGTTCTCACCTCGAAACGACTTGTTCTTACGATCGCGATCACCAG
GTGAAAAAGAGGAAGGCGTTCGAGGACTTGGTGAAAGACCTACGAACAGG
CGAC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig11822:9357..9810+

>mRNA_A-nodosum_M_contig11822.3.1 ID=mRNA_A-nodosum_M_contig11822.3.1|Name=mRNA_A-nodosum_M_contig11822.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=213bp|location=Sequence derived from alignment at A-nodosum_M_contig11822:9357..9810+ (Ascophyllum nodosum dioecious)
ATGTTTGAAGTTTTTGTGGGGCGCGGTTGCGATGAACGCGCGCGGCGAAG
GCGTCCATCTCCCGAAAGCGGAGTGCTTCACACACACTTGCCGGGCATTG
TGGCCTGGCTATGGCGAAATGGAGACCTACGTGGTTCAGGCACTCTCCCT
ATAAGAGCAGTGAAAAAGAGGAAGGCGTTCGAGGACTTGGTGAAAGACCT
ACGAACAGGCGAC
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