mRNA_A-nodosum_M_contig1181.23.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1181.23.1
Unique NamemRNA_A-nodosum_M_contig1181.23.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1181.23.1 vs. uniprot
Match: A0A2E8TQB1_9EURY (J domain-containing protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2E8TQB1_9EURY)

HSP 1 Score: 55.8 bits (133), Expect = 5.530e-7
Identity = 25/42 (59.52%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    1 VKRAYRELARQLHPDKTGGDAALAEQFKRVNSAYEVSLTIDG 126
            +KRAYR+LARQ HPD+  GDAA  E+FK + SAYE   T +G
Sbjct:   20 IKRAYRKLARQYHPDRNPGDAAAEERFKAIQSAYETIGTAEG 61
[Close]
BLAST of mRNA_A-nodosum_M_contig1181.23.1 vs. uniprot
Match: A0A7W0Z8P9_9ACTN (Uncharacterized protein n=1 Tax=Thermoleophilaceae bacterium TaxID=2732252 RepID=A0A7W0Z8P9_9ACTN)

HSP 1 Score: 53.5 bits (127), Expect = 5.830e-7
Identity = 30/61 (49.18%), Postives = 37/61 (60.66%), Query Frame = 1 
Query:    1 VKRAYRELARQLHPDKTGGDAALAEQFKRVNSAYEVSLTIDGIALLTLYPILSVSYVSITY 183
            VKR YR +AR+LHPD TGGDAAL E+FK +    E    +   + L   P L   +VSITY
Sbjct:   50 VKRRYRAVARKLHPDVTGGDAALTERFKLLAQVMEHVEQLQLPSPLVTSPHLRRIFVSITY 110
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BLAST of mRNA_A-nodosum_M_contig1181.23.1 vs. uniprot
Match: A0A086Y4C5_9RHOB (Molecular chaperone DnaJ n=1 Tax=Paenirhodobacter enshiensis TaxID=1105367 RepID=A0A086Y4C5_9RHOB)

HSP 1 Score: 55.1 bits (131), Expect = 1.040e-6
Identity = 23/36 (63.89%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:    1 VKRAYRELARQLHPDKTGGDAALAEQFKRVNSAYEV 108
            +K+AYR+LAR+LHPD TGGDA  +E+FK VN AY++
Sbjct:   24 IKKAYRKLARELHPDLTGGDAKKSERFKAVNEAYDL 59
[Close]
BLAST of mRNA_A-nodosum_M_contig1181.23.1 vs. uniprot
Match: A0A2E8QKJ9_9EURY (J domain-containing protein n=5 Tax=Archaea TaxID=2157 RepID=A0A2E8QKJ9_9EURY)

HSP 1 Score: 55.1 bits (131), Expect = 1.060e-6
Identity = 25/42 (59.52%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    1 VKRAYRELARQLHPDKTGGDAALAEQFKRVNSAYEVSLTIDG 126
            +KRAYR+LARQ HPD+  GDAA  E+FK + SAYE   T +G
Sbjct:   30 IKRAYRKLARQYHPDRNPGDAAAEERFKAIQSAYESIGTAEG 71
[Close]
BLAST of mRNA_A-nodosum_M_contig1181.23.1 vs. uniprot
Match: A0A2A5VP50_9ARCH (J domain-containing protein n=1 Tax=Marine Group II euryarchaeote MED-G35 TaxID=2007296 RepID=A0A2A5VP50_9ARCH)

HSP 1 Score: 55.1 bits (131), Expect = 1.060e-6
Identity = 25/42 (59.52%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    1 VKRAYRELARQLHPDKTGGDAALAEQFKRVNSAYEVSLTIDG 126
            +KRAYR+LARQ HPD+  GDAA  E+FK + SAYE   T +G
Sbjct:   30 IKRAYRKLARQYHPDRNPGDAAAEERFKAIQSAYESIGTAEG 71
[Close]
BLAST of mRNA_A-nodosum_M_contig1181.23.1 vs. uniprot
Match: A0A2D4XD13_9EURY (J domain-containing protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2D4XD13_9EURY)

HSP 1 Score: 55.1 bits (131), Expect = 1.080e-6
Identity = 25/42 (59.52%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    1 VKRAYRELARQLHPDKTGGDAALAEQFKRVNSAYEVSLTIDG 126
            +KRAYR+LARQ HPD+  GDAA  E+FK + SAYE   T +G
Sbjct:   42 IKRAYRKLARQYHPDRNPGDAAAEERFKAIQSAYESIGTAEG 83
[Close]
BLAST of mRNA_A-nodosum_M_contig1181.23.1 vs. uniprot
Match: A0A2E5YBL9_9EURY (J domain-containing protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2E5YBL9_9EURY)

HSP 1 Score: 54.7 bits (130), Expect = 1.460e-6
Identity = 25/42 (59.52%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    1 VKRAYRELARQLHPDKTGGDAALAEQFKRVNSAYEVSLTIDG 126
            +KRAYR+LARQ HPD+  GDAA  E+FK + SAYE   T +G
Sbjct:   37 IKRAYRKLARQYHPDRNPGDAAAEERFKSIQSAYEKIGTSEG 78
[Close]
BLAST of mRNA_A-nodosum_M_contig1181.23.1 vs. uniprot
Match: A0A443K323_9RHOB (J domain-containing protein n=3 Tax=Sinirhodobacter populi TaxID=2306993 RepID=A0A443K323_9RHOB)

HSP 1 Score: 54.3 bits (129), Expect = 1.950e-6
Identity = 22/36 (61.11%), Postives = 33/36 (91.67%), Query Frame = 1 
Query:    1 VKRAYRELARQLHPDKTGGDAALAEQFKRVNSAYEV 108
            +K+AYR+LA++LHPD TGGDAA A++FK V++AY++
Sbjct:   23 IKKAYRKLAKELHPDLTGGDAAKADRFKAVSAAYDL 58
[Close]
BLAST of mRNA_A-nodosum_M_contig1181.23.1 vs. uniprot
Match: A0A7K0S893_9ACTN (DnaJ domain-containing protein n=2 Tax=root TaxID=1 RepID=A0A7K0S893_9ACTN)

HSP 1 Score: 53.9 bits (128), Expect = 2.620e-6
Identity = 23/36 (63.89%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    1 VKRAYRELARQLHPDKTGGDAALAEQFKRVNSAYEV 108
            +K+ YR LAR LHPDKT GDAAL E+FK V+ AY++
Sbjct:   26 IKKKYRSLARDLHPDKTEGDAALEEKFKAVSEAYDI 61
[Close]
BLAST of mRNA_A-nodosum_M_contig1181.23.1 vs. uniprot
Match: A0A7K0V9U3_9ACTN (DnaJ domain-containing protein n=3 Tax=root TaxID=1 RepID=A0A7K0V9U3_9ACTN)

HSP 1 Score: 53.9 bits (128), Expect = 2.620e-6
Identity = 22/36 (61.11%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:    1 VKRAYRELARQLHPDKTGGDAALAEQFKRVNSAYEV 108
            +K+ YR LAR+LHPDKT GDAA+ E+FK V+ AY++
Sbjct:   26 IKKKYRSLARELHPDKTKGDAAMEEKFKAVSEAYDI 61
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1181.23.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E8TQB1_9EURY5.530e-759.52J domain-containing protein n=1 Tax=Euryarchaeota ... [more]
A0A7W0Z8P9_9ACTN5.830e-749.18Uncharacterized protein n=1 Tax=Thermoleophilaceae... [more]
A0A086Y4C5_9RHOB1.040e-663.89Molecular chaperone DnaJ n=1 Tax=Paenirhodobacter ... [more]
A0A2E8QKJ9_9EURY1.060e-659.52J domain-containing protein n=5 Tax=Archaea TaxID=... [more]
A0A2A5VP50_9ARCH1.060e-659.52J domain-containing protein n=1 Tax=Marine Group I... [more]
A0A2D4XD13_9EURY1.080e-659.52J domain-containing protein n=1 Tax=Euryarchaeota ... [more]
A0A2E5YBL9_9EURY1.460e-659.52J domain-containing protein n=1 Tax=Euryarchaeota ... [more]
A0A443K323_9RHOB1.950e-661.11J domain-containing protein n=3 Tax=Sinirhodobacte... [more]
A0A7K0S893_9ACTN2.620e-663.89DnaJ domain-containing protein n=2 Tax=root TaxID=... [more]
A0A7K0V9U3_9ACTN2.620e-661.11DnaJ domain-containing protein n=3 Tax=root TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1181contigA-nodosum_M_contig1181:201266..201559 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1105367.CG50_13165
PFAMsDnaJ,DnaJ_C
Model size296
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.61e-08
EggNOG OGsCOG0484@1|root,COG0484@2|Bacteria,1MUZ4@1224|Proteobacteria,2TR01@28211|Alphaproteobacteria
Descriptionchaperone
Cds size189
COG categoryO
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866598.711194-UTR-A-nodosum_M_contig1181:201265..2013701680866598.711194-UTR-A-nodosum_M_contig1181:201265..201370Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1181 201266..201370 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866598.723679-CDS-A-nodosum_M_contig1181:201370..2015591680866598.723679-CDS-A-nodosum_M_contig1181:201370..201559Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1181 201371..201559 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1181.23.1prot_A-nodosum_M_contig1181.23.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1181 201371..201559 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1181.23.1

>prot_A-nodosum_M_contig1181.23.1 ID=prot_A-nodosum_M_contig1181.23.1|Name=mRNA_A-nodosum_M_contig1181.23.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=63bp
VKRAYRELARQLHPDKTGGDAALAEQFKRVNSAYEVSLTIDGIALLTLYP
ILSVSYVSITYI*
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mRNA from alignment at A-nodosum_M_contig1181:201266..201559-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1181.23.1 ID=mRNA_A-nodosum_M_contig1181.23.1|Name=mRNA_A-nodosum_M_contig1181.23.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=294bp|location=Sequence derived from alignment at A-nodosum_M_contig1181:201266..201559- (Ascophyllum nodosum dioecious)
GTGAAGCGAGCCTACAGGGAGCTGGCGAGGCAGCTCCACCCCGACAAGAC
CGGGGGGGACGCTGCTCTGGCGGAGCAATTCAAAAGGGTAAATTCGGCGT
ATGAGGTAAGCCTTACTATTGATGGAATCGCACTTTTAACATTATACCCG
ATACTTTCTGTATCATACGTGTCCATTACATACATATAATGGGCGTGGAA
AAAGAGAGGCGTATAAAAAAAAACTGCCCATGGTGATGCAATTCCAACTA
CGTTGAGGACTAATGGCCCTGTGCCAGCGGACTCTTGGCAGTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1181:201266..201559-

>mRNA_A-nodosum_M_contig1181.23.1 ID=mRNA_A-nodosum_M_contig1181.23.1|Name=mRNA_A-nodosum_M_contig1181.23.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=189bp|location=Sequence derived from alignment at A-nodosum_M_contig1181:201266..201559- (Ascophyllum nodosum dioecious)
GTGAAGCGAGCCTACAGGGAGCTGGCGAGGCAGCTCCACCCCGACAAGAC
CGGGGGGGACGCTGCTCTGGCGGAGCAATTCAAAAGGGTAAATTCGGCGT
ATGAGGTAAGCCTTACTATTGATGGAATCGCACTTTTAACATTATACCCG
ATACTTTCTGTATCATACGTGTCCATTACATACATATAA
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