mRNA_A-nodosum_M_contig1181.14.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1181.14.1
Unique NamemRNA_A-nodosum_M_contig1181.14.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1181.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1181contigA-nodosum_M_contig1181:159885..167051 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size676
Hectar predicted targeting categoryother localisation
Exons3
Cds size354
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866597.124821-UTR-A-nodosum_M_contig1181:159884..1599271680866597.124821-UTR-A-nodosum_M_contig1181:159884..159927Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1181 159885..159927 +
1680866597.1343312-UTR-A-nodosum_M_contig1181:166055..1661701680866597.1343312-UTR-A-nodosum_M_contig1181:166055..166170Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1181 166056..166170 +
1680866597.1625435-UTR-A-nodosum_M_contig1181:166887..1670511680866597.1625435-UTR-A-nodosum_M_contig1181:166887..167051Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1181 166888..167051 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866597.142788-CDS-A-nodosum_M_contig1181:166170..1663281680866597.142788-CDS-A-nodosum_M_contig1181:166170..166328Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1181 166171..166328 +
1680866597.151643-CDS-A-nodosum_M_contig1181:166691..1668871680866597.151643-CDS-A-nodosum_M_contig1181:166691..166887Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1181 166692..166887 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1181.14.1prot_A-nodosum_M_contig1181.14.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1181 166171..166887 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1181.14.1

>prot_A-nodosum_M_contig1181.14.1 ID=prot_A-nodosum_M_contig1181.14.1|Name=mRNA_A-nodosum_M_contig1181.14.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=118bp
MPYARALPFTDLVGAMSGEDIFTVVKACFRAGAKETNSQRLQALVNEGFL
AIRTIGQQRSVQDRISVAVTKGVRVTAASQLVHPEPPSPMDGATIEWQDP
TDSSAHRVQLRSVERVG*
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mRNA from alignment at A-nodosum_M_contig1181:159885..167051+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1181.14.1 ID=mRNA_A-nodosum_M_contig1181.14.1|Name=mRNA_A-nodosum_M_contig1181.14.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=7167bp|location=Sequence derived from alignment at A-nodosum_M_contig1181:159885..167051+ (Ascophyllum nodosum dioecious)
TAGCTACTTATAGGTCGCTACTGAAGGAGGCAAGGGATATAAGGTACGCT
CTATTCACTCTGCGCCGCAATGAGGTGCCACGTACCGGCCCATATTCATA
ACTGATAACAGAACCACGCGAAAACATCCTTTACGTTGTTCTCAGTGTTC
GAAGTGAGCTCTTAGACACCATGTGCGTCCCATGTAGACCACTTGCACCT
AACGAGATAGTATTCCGCGGCGGGAAGTAACCGTATTTGACCCCCAGGTT
CGTACGTCGCACATGTAACGGCTGACTACCGTGCGAAAAGCACTATACAG
TAATTCTAACTGCTATGGGAACTAGAACCACTACGGAATGTTGTGTTACA
CTTTGTGTTATATTTTACGACGACTAATCACTGGACGGGACTACTAAGAG
ACCACCGTAAAAACTGTTGTATGTCTATCGCCCATCGTACCAATTGTGGA
TGTGGGAAAAAGACAGACGCGCAAAAGTTGGTACATGTACACATGTATGT
ATTTTGATAAGGCTGAAAATTGGTTTAATAGCGCAGAAGAGTTAATAAAA
GTTTATAGAAAACTTAAATTAGCTGAGAGTCATGCTAATGATATTGAAGC
ATCATTTAAGGACACTCTTCTGATAGAAACAGAAGGAGGTGAAAAGTTTT
AAAAACCCGGTTTCATATTTTGATAGTTTTCTGTGGGAGCGCTATAATGG
CGATCTTCAGGCTGGTCTAGTAATTCGAAGTATGCGTTTTTGGGTGCTTT
GCGTTCAGCAGCTCAAATGGTTTCCTATGAGATGTTGTTGTTGTTGTTGT
TGTTGTTGTTGTCTTCACATTAAAAGCCGTTCCGGTCTCTACTCAGTACT
TTCTAACATCCGTACTGGTCCAACTGACGCGGACGCCTTCCGTGGTCACA
GGCTAACTACCCAGAAAGGGTACACACATCAGAAAGATATAAAAGGACCC
AGAAAAGTCAACACACACGCGATAATTTGAAAATAAAATAAAACCCCCCA
GAAAAATAAGTCTCCAGACAGTCAGACGTCGCAGGCGACATGTCAGACAA
AGGAGATAGATAGAGCCCATCGCTCCCACTCGACACGCGAGGCCAAGCAA
AATGAAGCAAACAAAAAGAATCAAGGATCACCGATCAAGACAATAAAATC
GCATGATTCTATCCTATCGATGGGACTTGGGTTAATAAATGTATGTTTAT
GCGTAGGTACGCTAAACTTAACTGAGATAGCGCAATTAGATATTTGGCTA
ATTTTTCCTCTTTTTCCGGTAGGTATTATGTTTTTCATAGGGTGCTTGGC
AGAAACTAATCGTCATCCTTTCGATTTGCCTGAGGCTGAAGCCGAATTAG
TTTCGGGTTATAATGTTGAGTATTCTGCTATGGGATTCGCTCTTTTATTT
TTAGGGGAGTATGCTAATATGTTGGTTATGGGTGGAGTGACTTCCATTTG
TTTTTTGGGTGGATGGTTATCCCCTTTTGGTATTGGTATTTTACCTGATG
GTATTTGGTTTGGTTTTAAAATTTGCTTTTTTGTTATTTTATTCGTGGTG
ATGCGTGCTATTCTACCACGTTATCGTTATGACCAGTTAATGAAGCTTGG
TTGGAAGTGTTTTTTACCACTAGCTCTTGCACTTTTTATTACCTTAAACC
GCCACAGGTGGACGGGTGGAGAACACTAAGGCTTTGAGATAGCCCTGTTG
AAGGAACTCGGCAAAATGACTCTGTAACTTCGGAATAAGGAGTAAAGATT
TAGGCGAAAGCTTCAATCTTTGACACAAAATCGGGGGTGGCGACTGTTTA
TTAAAAACACGGGTCTCTGCTAACTCGCAAGAGGATGTATAGGGACTGAC
ACCTGCCCGTATGGTCACACACATAGCAGGAGTATGAATCAACCGGAAAA
GGTTGCCAATCCTGCACGTGGTAGGCTGAACAGGAAAATGAATATTCCCT
GTCCGCGTTTGTGCCTGAGAATTTGGTCTCGCGAGACGGGTTCGGCAGTC
CCGTCCGGCGTCAGCCTGCTCATCTCCATACTCAGGCTGAATCTGGTGCT
GACTTACGGGATTCCTCCCGAGTTCTGCGGCGGCGTCCATTCATTTATTT
AAAACCGCCATACGCCATCGGGTCAGTCCCGAGTTTATCGGGTCACGCAA
TTGCGTACCGATGGCGTTCACGCTGCCAGTCTTTTTATTTTTTATTTTTT
TCCCTGTTCAGCAGACCACGAGCGGGATTGGCCACCGTGTAAAGTAGTTT
TTTTCGGATTGGCAACCAATGCGCTGAATGTGAGAAACAACAACAACAAC
AACAACTGCCGAGAGTCCGCCGGCACGAGGCCAGTAAACCTCAAGGTAGT
TCCGAACGAGTGCTGCCTTGGCAGGTCACCATGGACCAAATAATATTCGC
CTCTCTTTCCCACACCCACTATTGGTATGAAGTGGGCATGTTGAAAGTAC
CGGCGAGCTAGCCCAGATCAACCGGGTAAGGTTGCCAATCCTGCTCATGC
TCAGCTGAACAAGGAAAATAAATATTTCCATGTCCCCGTTCGCGCCTGAG
AATATTGTCTCACGAGACGAGTTCGTTCAGCCTGCTCATTCTCCATACTC
AGGCTGAATCTGGTTCTTAGGCCGACTCTTACGGATCAGAAAAAAAGTGA
TCGATTTTTTTTTCTTTCTGATAACAACCATAAACTCTATCTTATGGGTC
AGAAAAACACGTTTTCGGATCACTTTTTTTCGGAGGAAGCGCTTTCGGAG
GAGCAGTTGATCAGAAAATCTGGAAAAACGGAGGAAGAAGTTACAAAAAG
AAAAGTGATCAGAAAAATAGTTAGTAGCGATACGAAGGCGTCCCCCGGAC
GGATAGACGCAAAAGTTAAAATCTTCCTGCAAACACAGACCTCGTGTAGG
TTTGAGACAAGCGTGGATGACTACGTTGCAGCAGTGACGGTCGCGGTAGC
AGCCTATCGACCCCGCAAGCTGAGAATCAAAACAATCAGTTGGCACTGGT
TCTGGAGTTGCTCGACGAGGAAGATGCAATCGTGTCCCGAGAACAAATCT
GTAGCTTTCGCAACGTACGTCGTGCAGCAGTTTACGTCCTCGGTATATAT
AATTAGATGCCGTTGGAGGCCGCTTGCACAGCAATGTTTGCATGGCACGT
TGCGGCCTTCGAGCTTCGTTCGTGTGGTTGTGCAAGCCCGAAACGATTAA
AGACCACGTGATGGACCACGCTACGATTGTAAGTTGGTGCACAAGGTAAT
GTGCCTACCCGCAGCAGCAGTCCTTCGGTATGTTTTGTGGGCGAAGGTGT
GCCCCCGACGGACGGACGCAAAAGTTCAAATCTGCCTTCAAACACAGACC
TCGTGTAGGTTGGAGACAGGCATGGATGACTGTGTCGCAGCGGTGACGGC
CGCGGTGGCAGCATGTCGACGCTGCTAGCAGAGAATAAAAATATCAATCA
GTTGGCACTCGTTCTAGGGGTTGGTCCACGTGGAAGATGCAATCGTGTCC
CGAGAACACATCTGTAGCCTTTGCATTGTGCGTCGTACAGCAGTTACGTC
TTCGGTACAGATTATATGTTGTTGGAGGCCGCTTGCACAGACAGTTCTGT
TTGCATGGCACGCTGCGGCCTTCGAGCTGCATTCGTGTGGTTGTGCAAGT
CCGAAACGATCGAAGACCACGTGTTGTACCACGCCACGGTTGTAACTAGA
TGCATAAACAAGGCAATGCGCCTACCCGCAGCAGTCGTTCGCGATGTGTT
ATGGGTGACAGCATTATCTAAAACATACAACATTAGACTGTGTATACATT
GAACAGACTCTCCAGTAGAGGACAACGTGCAGACGCCGAGATTCATCGGC
TTTGAATACACCTGTGCTACTTACAACCGTGGCATGGCACAGGACATGAT
CTTCAATCGTGTGGAGCTTGCACAACCACACGAATACAGCTGACCGGCCA
CACCGTACGATGCAAACATACCATTACGGAAGATCATCCGACACAAAAAA
AATGGAGCTATAAACTCCCAGACATGAGGACTGTCAGTATCAATATTTTT
CGATCATGTTTTTTTCTGTCCCATAAATCACGTCGCATCGGTGTTCTCAT
CATAAATTTTCTTGCCAGAAAAAAAAGTTTTTCAATCACTTTTTTTCTGA
TCCATAAGAGTCGGCCTTACACGCGGGATTCCTCGCGATTTCCGTGGCGT
CGTCCATTTATTTATACCACCATACGTCATCGGGTCAGTCCCGAGTTTGT
CGGGTCTCAAAAATGCGTGCCGATGGCGTCCACTGCCGAGAGTCCGCCGG
CACAGGGCCAGTAGTTCTCAAGGTAGTTCCAGTTACAAGTGCTGCCTTTG
CAGGTCTCACCACGGACGAATTAACGTGCGTCTCTCTTTTCCAACATGGG
ATGTCTTGAATAGGCAGCACCCTCTACTCAAGCTACCTTGAGGAACTCTA
CTCAAGCTACCTTGAGAACCACTGACTCTGTGCCGGTGGACTCTTGGCGG
TGAACGCCATCGATACGCCATAGCGTGGCCTGATAAACCCGAGGCGGACC
CAGTGGCGGTTGGCGCTATAGATGGATGCTGTCGCGGAAAGTGGAAGGAA
TCCCGTGAGTAACCAGATTGATGATTGATGATTCATCCTGAGTATAAAGA
ACGAGCGGGCTGACGCGGAACGGGACGGCCGAACTCGTCTTGCTAGACCA
AGTTCTCAGGCGCGAACGGGGACTAGGAAAAAAATAAAAATCTCTTTTCA
GCTGACCACAAGCAGGGTTGGAACCATACCCGGTCGATCCATATTTTTAT
AGAAAAATCAGAACCACCCACCACTTGGGTGTCAAATATACACAAAATAA
ATAGAGAAAGATTCGTGTATGGTCAGCACATTCAGCAGAGTATGAATCAA
CCGAGTAAGGTTGCCAATCCTGCTCGTGGTCAGCTTAGCAGGATTTTTTT
TTTTTTTTTTACTGTCCGCGCCTGATAATTTGGTCCGTGAAACGGTTTCG
ACCGTCCCGCCCCGCGTCAGCCCGCCCATCCTCCATACTCAGCCTGAATC
TGGTGCTTACTCACGGGATTCCTCCCGCTTTCCGCAACGGCGTCTACATC
TACCGTCAAACCGCCATCGGATCAGTCCCGAGTTTATCGGGTCACACAAT
TGCGTACCGATGGCGTTTCCTGCCGAGAGTCCGCCAGCACAGGGCCAGTA
ATCCTTCAGGTAGCTCCGGGAACGCGTGCTGCCTTTATATTTTTTACCAT
GGACCAATTTTCATGCACCTCTCTTTTCCCAAATCTACTAATAATATTGG
TGTCATGGTGGGGCACAAAAGCAACTTCCAAATTAAATTCGCATGCATTT
ACAGATTCAGCCTGGGTATGGAGAATAAGGGGCTGACGCGGGACGGGACG
GCCGAACCCGTCACGCGAGACCAAATTCTCACGAGCGAACTGGAACAGAG
AAAATTCAAAATTCGTCTTCCCTGTTCAGCTGACCACAAGCAGGATTGGC
AACCATACCGGTTGATGCCCAGTCTCCTGAACGTGATTACTTACATATAT
ACTGTAAACTGTACGTCGTAGCGCTTACCTGGTCCTGCTTCACTGCTGTT
TACCTCGTCCGTCTACGACTCGATCGGCTCGTGAAAAAAAAGCGTGTGGG
TTCGAGGGTAATACTCGTATCTACAGGTACTTGAGCTGTTCGTTAACGAC
AGTAGTGAAGCGTACCTCAAGTTAAAAAAATATAATGTCTGCAAACCCTT
AGTGAAATTATGCAATGTCCTGGAGCAACAGCGGAGATCTTGTAGTGTAG
TTGTAAGGGAGAGCTACGCCAGACTACAGAAGCATGTCCACACACCATGC
AGAAAACTCAACAGAAAGGTATAGTGGCAGGACATGTGCTGGATGTGATT
TCTAGATTGAACAGAGGTTGCAAATGCGACCCAGGCGACTGCTCCCTGCA
GTGCCCTCCATGATATTTGCATCTTGCGTTGTGATACTGATGGGTTTGGC
TCAATGCTGGAAATGCGCTCGCTTTTTAGAATCTTGGATAGATCGGTTAA
CATGATCAACACGAGCTTGTGCCTCGCCTACACGGAATTGCGTTTTATTT
TTTATTTTTTTGTATAATAGCCGCAGTCCGTCCCTTGGCCCGCCACCGTC
ATCGCCGCGCTGAACTTGCAGCCGGGGCGAGCCACTCGCAATTCAGGCCT
TGCCTTTCTTAGCGGGGGGTCCACAGGTCGTGTCCACCAGGACCTCGCAC
TACAATGCACTTGAAGCCGTGCTGCCGCCGTCGGCGATGCCCTACGCACG
CGCGTTGCCCTTCACCGATCTAGTCGGGGCCATGAGCGGGGAAGACATCT
TCACCGTGGTGAAGGCATGTTTTCGCGCAGGGGCGAAGGAAACGAATTCC
CAGCGATTACAAGCGCTCGTGAACGAGGGCTTTTTGGCGATTCGGTGGGT
GGGTGTAGATATATTTTCCGCGCATTTACTAGGTGTGTGTGTGTGTCGAT
GCCATTGATCTTAGCTTTTTATTGTCATTTGAGGCGCCACGTATGACTAT
GGAAAAATCATGCGAATTTTAGGTGTAACCTTGTCAACTTTTTGAATTTC
TTGCTATTAAACCTCCAAACGCTCTCCTAGAATACCGAAACTATAGGTGC
GAGAGTGCTCTGACTTGTACAATACGATGTGGAATGTTTTGCCCCCTTAA
TTGAAGTTCAATTTTCAAGGTAGTCGCATGCATACTCCGATCACTTTTGT
CCAAGTAATGGTAAATCGGCCGCTGCCCTTATCGCGACACCTTATAATAT
TACTTAGGACTATTGGGCAACAGCGGAGCGTGCAGGATAGAATAAGCGTT
GCCGTCACCAAGGGGGTGAGGGTTACCGCAGCTAGCCAGCTGGTGCACCC
GGAGCCTCCGTCGCCGATGGACGGCGCTACTATCGAGTGGCAAGATCCAA
CGGATTCTTCCGCACACCGCGTGCAGCTGAGGTCCGTGGAGAGAGTCGGC
TGACCCTTTTGTCGCGTTCCTTAGCAAAGGTGAAAGAAATCCAACGTTCC
ATCTGACCCTCCGGTCTTCGATGTCCATACGTGTGGCAGTCCTAAACGCA
AGCAGCCACCTACCAAATTCGGTCCGGTAGTCAAGGTAAGGTTGGCGCTT
TAGTGGCGTCGGCACGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1181:159885..167051+

>mRNA_A-nodosum_M_contig1181.14.1 ID=mRNA_A-nodosum_M_contig1181.14.1|Name=mRNA_A-nodosum_M_contig1181.14.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=354bp|location=Sequence derived from alignment at A-nodosum_M_contig1181:159885..167051+ (Ascophyllum nodosum dioecious)
ATGCCCTACGCACGCGCGTTGCCCTTCACCGATCTAGTCGGGGCCATGAG
CGGGGAAGACATCTTCACCGTGGTGAAGGCATGTTTTCGCGCAGGGGCGA
AGGAAACGAATTCCCAGCGATTACAAGCGCTCGTGAACGAGGGCTTTTTG
GCGATTCGGACTATTGGGCAACAGCGGAGCGTGCAGGATAGAATAAGCGT
TGCCGTCACCAAGGGGGTGAGGGTTACCGCAGCTAGCCAGCTGGTGCACC
CGGAGCCTCCGTCGCCGATGGACGGCGCTACTATCGAGTGGCAAGATCCA
ACGGATTCTTCCGCACACCGCGTGCAGCTGAGGTCCGTGGAGAGAGTCGG
CTGA
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