mRNA_A-nodosum_M_contig1181.12.1 (mRNA) Ascophyllum nodosum dioecious
|
Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1181.12.1 vs. uniprot
Match: D7FNN9_ECTSI (Phorbol-ester/DAG-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNN9_ECTSI) HSP 1 Score: 551 bits (1419), Expect = 2.210e-173 Identity = 462/1088 (42.46%), Postives = 562/1088 (51.65%), Query Frame = 1
Query: 319 AVDVADPLEGLSESERLSLAIRFG-------GIRMCAALTHGHSFESSIFRLPSKCLACQELVWGPFNRGCVCLVCKLTAHRSCTGSATMPKCPTKDLFANFCRLELGLRRPAPAAPSLDV------------QEAVLVAAPVRKMSSAASAHAEQDRVSSGDMEGWATVEETTANDSVERKTRRRE------------------SAFSWSPFGSSDRKRPLSFNANNDINERQQQKLELEAGEHAENI--AVGGDKDATNAKNNPSVVSPHPDGVDGFSGHQPLTVEVRGADPATA--SAPANPKASVGIRDVGKMSVAGGVVGAVLXXXXXXXXXXXXXXXXXAGRWSVQGLWQRIEEDRQAAGAAAGLAVSSKSLDGDRSATGIEEGREEGVVEAGTQGSRDVWARIAYQVQEEEQRSSWELDPEQQALLEHGECDTGEVATFVVSKLLADDTTMPSRLYKALLDEFRSRH----------------RLCICRRTV--KRRSGIADMVALFPRVGGGRRTHRETIGSGDGGGGGEVSSVLQEDGTILSTSISGLEKSFSFVEETEIVEGEESDAASGDFMENGYGSGVEEIDVGEGER--------SELEPREEPVVSASTPRKPVEATARFS-TAARRVAV------SAIMSREASRNSSCRLDSWVRLEGGACANCGSRTADVSPHAQMTVGSSGR--------DVEDVRGDLGDSWAATEASSCCCADEG-LSASPEIIDGVPLHEARKGGSGEPASMFEREDSPEETLPLLQPKGRKGASQSEPAAAKTGREGMSSADFGENRTRETTEMGGGAEEETCD-----------------------------------ALRDVHGVLRELTLAVLSCCPILTSSDDASIQAVNCVDQQILGVTYGPVYARVAS-GQTRERDTALAQRVRREEYSRREAGRPSLAATCDTEALAALRSAGAARTGRDKLEFLVQAVERVSESLPAKA-TTDMLLRSLCRHLAAATMGSGGTATRSAEMWGRNNGRGGAGGAPLARPHAEVAFVEQFMRDESWLMGKQGYVLTTVDAALHVLLDPAMSDEIFSDSS 3222
AV +DPL GLSESERL+L IRFG G MCAA++HGHSF+SSIFRLP+KC AC ELVWGPF RGC CL C +T HRSCTG+A++P+CPTKD+F FCR ELGL E R +S A + GD++ WATV+ T+A+ + + S+FSWSP G +RKRP S + + AG+ A A G D +A N G SG P T D A A S+ ++ AS+GIR V K+SVAGGVVGA+ XXXXXXXXXXXXXXXXXAGR QGLWQRIE+ R+ AGA G+ + K DG +A +EE + RD+WARIA +V+ E Q + WEL PEQ+ LLE GEC+ GE+A FVV K+LAD+T M L+ ALL EFRSRH R V +RRS DMVALFPR S GLEK+FSFVEE EIV GE SD D G+R + +PV S + ATA + TA RR +V +A+ SR++ R++S R+DSWV+LEGG C NCG R A H+ G SG DVE+ G LGD WAA EA C C DEG LSASPE D+P L P R+ A AA TG AD G + TE G GA+ D ALRDVHGVLRELT AVL+ CP LTSS +A IQAVNC+DQ++ TYGPV+ R+AS G R+ D +LA+RV+REE SR AGRP L + C E ++ALR+AG+ARTGRDKL FLV+A ERVS++LPA+ TTD L+ S+CRHLAA A A L RPHAEVAFVEQFMRDESW+MGK+GYVLTTV AALHVL +P +SD+IF D+S
Sbjct: 27 AVVPSDPLAGLSESERLALLIRFGAAAAGPKGGGMCAAMSHGHSFQSSIFRLPAKCSACHELVWGPFTRGCTCLTCSVTVHRSCTGAASLPRCPTKDVFDAFCRSELGLPPXXXXXXXXXXXXXXXXXXXXTGSEQGAETPGGRSPASCGGAGGGGAAHTGGDLDEWATVDGTSAHSNSAAVGQXXXXXXXXXXXXASCALQDLGSSFSWSPLGLGERKRPTSPVVSEXXXXXXXXXXXVPAGDAAAETRTAPGDAGDTVSALGN-----------QGASGAVPTTA----TDLAVAADSSASSTTASMGIRGVTKLSVAGGVVGALFXXXXXXXXXXXXXXXXXAGRSVQQGLWQRIEKSRREAGAE-GIRLP-KGADGSTAAAVVEE--------TAARKPRDLWARIAGKVESEHQPTIWELAPEQEKLLEQGECNAGEMAMFVVGKVLADETAMLFHLHAALLAEFRSRHDSSRSGXXXXXXXXXXXXXXXTRPVPIRRRSSDTDMVALFPRSXXXXXXXXXXXXX-------XXXXXXXXXXXXFFASTPGLEKTFSFVEEAEIVAGEGSDTPGSDDXXXXXXXXXXXXXERSGDRRGRRLPTATRAHRWSKPVRSEAAGLASAPATAAVAVTAGRRSSVGAAASAAAVASRDSWRSNSSRMDSWVQLEGGVCGNCGGRVA--GRHSANGGGGSGSRSTRALVGDVEEDEGGLGDGWAAAEAPVCWCRDEGGLSASPE-------------------------DAPISVLANAPPPPRQNAVGDGGVAATTG------ADSGTKPDK--TESGAGADRNGLDRPQNGCCPAAGAGATXXXXXXXXXXXXXXXXXXXXALRDVHGVLRELTQAVLAWCPQLTSSHEAQIQAVNCIDQRVFSETYGPVFGRIASSGAARDGDASLARRVQREERSRAAAGRPPLLSACRPEVVSALRAAGSARTGRDKLGFLVRAAERVSDALPAEQRTTDALIFSVCRHLAAXXXXXXXXXXXXXXXX--------AQAAALPRPHAEVAFVEQFMRDESWVMGKEGYVLTTVIAALHVLNNPELSDDIFLDAS 1039
BLAST of mRNA_A-nodosum_M_contig1181.12.1 vs. uniprot
Match: A0A7S2M9W4_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M9W4_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 2.260e-10 Identity = 60/214 (28.04%), Postives = 97/214 (45.33%), Query Frame = 1
Query: 2560 DVHGVLRELTLAVLSCCPILTSSDDASIQAVNCVDQQILGVTYGPVYARVASGQTRERDTALAQRVRREEYSRREAGRPS--LAATCDTEALAALRSAGAARTGRDKLEFLVQAVERVSESLPAK-----ATTDMLLRSLCRHLAAATMGSGGTATRSAEMWGRNNGRGGAGGAPLARPHAEVAFVEQFMRDESWLMGKQGYVLTTVDAALHVL 3180
+ H +++ +T +L P+L+SS + + + V+ + G Y +Y QT+E+D L+ +VR ++ G S ++ A+AALR+ T +KL V +E +SE D LL +C+H+ A+ + HAEVAF+E+F RDE L GK+GY L T+ A+LH L
Sbjct: 19 NAHNIIKHVTATLLEVRPVLSSSSVMTELSADAVELLVFGELYSDIYEEFVQ-QTKEQDLNLSNKVRELCDHVKDGGVESGVESSAISQPAIAALRALPQVHTPAEKLNHCVGFLESISEHFSTLYQGKCIDADTLLVMVCQHVVASN---------------------------VDHLHAEVAFLEEFARDEQLLSGKEGYALITLQASLHYL 204
BLAST of mRNA_A-nodosum_M_contig1181.12.1 vs. uniprot
Match: A0A6U1A6V6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U1A6V6_9STRA) HSP 1 Score: 75.9 bits (185), Expect = 3.480e-10 Identity = 70/235 (29.79%), Postives = 106/235 (45.11%), Query Frame = 1
Query: 2536 EETCDALRDVHGVLRELTLAVLSCCPILTSSDDASIQAVNCVDQQILGVTYGPVYARVASGQTRERDTALAQRVRR---EEYSRREAGRPSLAATCDTE--------ALAALRSAGAARTGRDKLEFLVQAVERVSESLPAKATTDMLLRSLCRHLAAATMGSGGTATRSAEMWGRNNGRGGAGGAPLARPHAEVAFVEQFMRDESWLMGKQGYVLTTVDAALHVLLDPAMSDEI 3207
E + D G+ EL AVL L+ D++ I +N VD+ +LG Y +++ V G+ R DTAL +++ E S +G A+ D A L + ART DK+ LV+AVE + + P T D L+ +L R +A + + P H+EVAF ++ RD+ +GK+G+ LT+V AAL VL D +EI
Sbjct: 437 EPVASPILDAMGLAHELIAAVLHYHERLSQRDESIIATINAVDRVVLGEIYPTLFSDV-QGRFRSADTALREKLDHASAERVSDGGSGAEGSASGWDMSEFSQAQVTAAGTLAAVAKARTTLDKMRCLVRAVECTAAACPHAPTADDLVPALARTVALSMLLE-----------------------PSLAMHSEVAFTDELCRDDLLCLGKEGFALTSVTAALSVLADLPNDEEI 647
BLAST of mRNA_A-nodosum_M_contig1181.12.1 vs. uniprot
Match: B7FUU1_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FUU1_PHATC) HSP 1 Score: 69.3 bits (168), Expect = 4.070e-8 Identity = 60/210 (28.57%), Postives = 92/210 (43.81%), Query Frame = 1
Query: 2560 DVHGVLRELTLAVLSCCPILTSSDDASIQAVNCVDQQILGVTYGPVYARVASGQTRERDTALAQRVRREEYSRREAGRPSLAATCDTEALAALRSAGAARTGRDKLEFLVQAVERVSESLPAKAT---TDMLLRSLCRHLAAATMGSGGTATRSAEMWGRNNGRGGAGGAPLARPHAEVAFVEQFMRDESWLMGKQGYVLTTVDAALHVL 3180
D H V++ +T +L P S + V+ + G Y V+ +A +T E DT L RV E S + ++ +ALAAL + A + DKL + V+ +E +S D LL+ C+H+ A A L + +AEVAF+E+F RDE L G++GY L T+ A++H L
Sbjct: 544 DAHAVIKHVTATLLEVRPGFGHSRAITELTAAAVESLVFGKLYDSVFGEIAF-ETEEIDTKLLDRVAEFEASEHSINKELVS----EQALAALCTLPEAHSAVDKLHYGVKFLELLSSHFSESGNPICADSLLKMACQHILA---------------------------AKLPQMNAEVAFLEEFARDEQLLKGREGYALVTLQASMHFL 721
BLAST of mRNA_A-nodosum_M_contig1181.12.1 vs. uniprot
Match: A0A7S3XRE5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XRE5_HETAK) HSP 1 Score: 65.5 bits (158), Expect = 2.750e-7 Identity = 65/231 (28.14%), Postives = 96/231 (41.56%), Query Frame = 1
Query: 2548 DALRDVHGVLRELTLAVLSCCPILTSSDDASIQAVNCVDQQILGVTYGPVYARVASGQTRERDTALAQRVRREEYSRREAGRPSLAATCDTEALAA-LRSAGAARTGRDKLEFLVQAVERVSESLPAKATTDMLLRSLCRHLAAATMGSGGTATRSAEMWGRNNGRGGAGGAPLARPH------------------AEVAFVEQFMRDESWLMGKQGYVLTTVDAALHVLL 3183
DA+ D HG+ REL + + P L + I VN VD+ + G Y V+A++ + D A V+ E S P A TEA A L+ RT DKLE L+ A++ S +R + +N G +GG PL+ +E+ F+E+F RD+S L+GK GY LTT AA++++L
Sbjct: 165 DAVGDAHGLTRELVATMFTTHPFLQECTETIIATVNAVDRLVFGEIYWTVFAQIRIQNHYQDDLLNACTVKALE-SPTSISLPGFNA--GTEAAAKILKCVSERRTAFDKLEVLLDAIQSTELS-----------------------------SRPDQFLDKNGGNSMSGGEPLSADMLLPAITKVILTSGIQHLPSELKFMEEFSRDDSLLLGKYGYALTTFQAAVNIIL 363
BLAST of mRNA_A-nodosum_M_contig1181.12.1 vs. uniprot
Match: A0A7S4EG19_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EG19_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 2.420e-5 Identity = 58/222 (26.13%), Postives = 97/222 (43.69%), Query Frame = 1
Query: 2557 RDVHGVLRELTLAVLSCCPILTSSDDASIQAVNCVDQQILGVTYGPVYARVASGQTRERDTALAQRV----RRE---EYSRREAGRPSLA--ATCDTEALAALRSAGAARTGRDKLEFLVQAVERVSESLPAKATT-----DMLLRSLCRHLAAATMGSGGTATRSAEMWGRNNGRGGAGGAPLARPHAEVAFVEQFMRDESWLMGKQGYVLTTVDAALHVL 3180
RD H V++ +T ++L P S + + V+ + G Y V + + + +D L +++ RR+ E S + G P + AL AL A + DKL + V +E++SE ATT D LL+ +C+H+ A + ++++AF+E+F RDE L G++GY L T+ A+LH L
Sbjct: 816 RDTHAVIKYITTSLLLTRPGFGHSSSFTEKTATAVESLVFGEIYDLVTEEIEL-EYQNQDDLLLEKIANFERRQDQGEDSLKTPGNPCFGYKSYISEAALEALHCLPRAHSAVDKLRYCVVFLEQISEKFSNTATTSVMGADSLLKMVCQHILL---------------------------AKVIGINSQIAFLEEFARDEQLLRGREGYALVTLQASLHFL 1009
BLAST of mRNA_A-nodosum_M_contig1181.12.1 vs. uniprot
Match: A0A7S0FMN2_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FMN2_9STRA) HSP 1 Score: 54.7 bits (130), Expect = 7.200e-5 Identity = 41/125 (32.80%), Postives = 58/125 (46.40%), Query Frame = 1
Query: 2824 ALAALRSAGAARTGRDKLEFLVQAVERVSESLPAKA------TTDMLLRSLCRHLAAATMGSGGTATRSAEMWGRNNGRGGAGGAPLARPHAEVAFVEQFMRDESWLMGKQGYVLTTVDAALHVL 3180
AL AL S A++ DKLE V+ +E +S A + D LL+ +C H+ A + R +AE+AF+E+F RDE L GK+GY L T+ A+LH L
Sbjct: 38 ALEALLSMSDAKSSVDKLENCVKFLEAISVHFDQAAGGGKAVSADYLLKMVCEHIIV---------------------------AKVPRLNAELAFLEEFARDEQLLRGKEGYSLVTLQASLHFL 135 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1181.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1181.12.1 >prot_A-nodosum_M_contig1181.12.1 ID=prot_A-nodosum_M_contig1181.12.1|Name=mRNA_A-nodosum_M_contig1181.12.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=1025bp MARRPESNFSNAIVNPQANLSSSRQEEDVWDPAAVDVADPLEGLSESERLback to top mRNA from alignment at A-nodosum_M_contig1181:130629..134729- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1181.12.1 ID=mRNA_A-nodosum_M_contig1181.12.1|Name=mRNA_A-nodosum_M_contig1181.12.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4101bp|location=Sequence derived from alignment at A-nodosum_M_contig1181:130629..134729- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1181:130629..134729- >mRNA_A-nodosum_M_contig1181.12.1 ID=mRNA_A-nodosum_M_contig1181.12.1|Name=mRNA_A-nodosum_M_contig1181.12.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=3075bp|location=Sequence derived from alignment at A-nodosum_M_contig1181:130629..134729- (Ascophyllum nodosum dioecious)back to top |