mRNA_A-nodosum_M_contig1180.11.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1180.11.1
Unique NamemRNA_A-nodosum_M_contig1180.11.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1180.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1180contigA-nodosum_M_contig1180:107527..109293 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size475
Hectar predicted targeting categorymitochondrion
Exons3
Cds size474
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866596.8937836-CDS-A-nodosum_M_contig1180:107527..1076041680866596.8937836-CDS-A-nodosum_M_contig1180:107527..107604Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1180 107528..107604 -
1680866596.9040587-CDS-A-nodosum_M_contig1180:108566..1087061680866596.9040587-CDS-A-nodosum_M_contig1180:108566..108706Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1180 108567..108706 -
1680866596.9150424-CDS-A-nodosum_M_contig1180:109036..1092931680866596.9150424-CDS-A-nodosum_M_contig1180:109036..109293Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1180 109037..109293 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1180.11.1prot_A-nodosum_M_contig1180.11.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1180 107528..109293 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1180.11.1

>prot_A-nodosum_M_contig1180.11.1 ID=prot_A-nodosum_M_contig1180.11.1|Name=mRNA_A-nodosum_M_contig1180.11.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=158bp
RRLLKATIYERSRAFSAWHVVLQCPGQCKGTYYANKHVMRHGEYKGHFFR
ALEDGTSPKYITNKSGKCAVAVAFLRDVTVMICRMRAGFDQISDWYRRTV
QATTGQGTTPLAGDQLRTCWAIYAVLQHFNGPDLWAWAPPAGHVITYNTP
QEVVIMEK
back to top

mRNA from alignment at A-nodosum_M_contig1180:107527..109293-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1180.11.1 ID=mRNA_A-nodosum_M_contig1180.11.1|Name=mRNA_A-nodosum_M_contig1180.11.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1767bp|location=Sequence derived from alignment at A-nodosum_M_contig1180:107527..109293- (Ascophyllum nodosum dioecious)
AGGCGGCTGTTGAAAGCGACAATATATGAGCGATCCCGGGCGTTTTCTGC
CTGGCATGTAGTTCTACAATGCCCCGGGCAGTGTAAAGGCACATACTACG
CGAACAAGCATGTGATGAGGCATGGCGAGTACAAGGGACACTTTTTCCGC
GCACTCGAGGACGGGACCTCACCGAAGTATATTACGAACAAGAGCGGAAA
ATGCGCTGTGGCAGTGGCGTTTCTACGCGACGTGACCGTCATGATTTGCC
GTATGAGGTGAGATTATATCGGTGGTTGGAAGGCCGCCGCTGTTCTGCAT
AAACCGCGTTGAACATGCTATACTAGCACACATCGGTGCGCCCTTTGACT
CTCACCGCTGGATCGCAAACCTGGATCGTCTATAACGACTACGTAGGTAG
TCGCCGCTGTAGTTTGGGAATTGTTGTCGGCCGATGCATCACATACAGAC
CCTCCACATGCAGACGAGTGTAGGACGGTGGCCCAAGAGGTTTTTTGCAG
TGGGTTTGCCTTGTACTATGACACACGCGAACTGGTCTCCTGGTCAGACT
ACGCGCTCCAAGTATTGCCCGACTATTCGTTGTACAGGGCCGGGTTCGAC
CAGATCAGCGATTGGTACAGGCGTACAGTACAAGCGACGACGGGCCAGGG
GACGACTCCTCTCGCGGGGGACCAGCTACGCACGTGCTGGGCGATATATG
CGGTCCTACAGCACTTTAACGGACCAGGTGTATGAGTGTGTGCGCGTGTG
TAAATATTGATGACGAGTTACCCTCACGGCCCGTACATCATCGCCAGATA
TGTAACGCATAAGCGCATAATTTTTTTTGTTTCCGTCTACATCTCCCTCG
AAGGCCCCCCGACACTTCAAAGGTCGACATTCCGATATAGATCTAGGCAT
ATCGCGTTGCGCAATCCGATTTATTTTTATTTTGAAGTGTCAACCGATCT
ATGATCGATCATTTTTCAAATATAAGTGGGAAGGGTTCAATGGCCCACCA
CACAATTATCAATTAAAGGTTGTGTATTTATACTTCAAACTACCTCTTCT
ACTGGTACGGTGTGCATCAGATTTATACAGCATTTTGCCTCTGTTTTACG
TCATCGCCACTCTATTACGTATAGGGGGGGGGTTGGACGAAGAACATTGT
CCAACTCCGAGGGTATCTTTATGTGTTACCCGTCGGGCGGGGTAATGTAT
TGTAAAATCGAAAGCATAAAACTGTCAGCGTGAGATATAATGCCCGATAG
AAAAGAAAAGCTGCACTTTGACATATAGTTTTTTGTGGTGTAATGAAGCT
ATTGCCCGCTCGTACCAACGTCATGAACTGCGCTAACCCGAGCTATCTAC
ACTCGTCGAGGGGGTTACCGTCTCATAGGAGGATACTAGCCAATATATGT
TAGTAAAATAAAATAATAAGGATATCGGCCGCGCATGCATGTGCAAACTC
GTAAGTTGATAAGTGTGTTCCGTGGATCGTGGCCCATTCATAATGGTCCG
CAGGAGATATATACTTGGTTTAAATCGGTACAAGTTAGTGTCGGTACCTA
CGCGACGTGCTATCGGTATTGTGTACACGTACTGAGCCCACCCCCCCCCA
ACTAGCTCTGTCCCCATGCCATTATGACGCGTACATAATGGTTCTCGCTC
GCTCTCTTCCTCTACTCCGGCTTGTACGACGTACCGTAGATCTGTGGGCG
TGGGCTCCTCCCGCGGGCCACGTCATCACGTACAACACCCCCCAAGAGGT
TGTCATCATGGAGAAGG
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig1180:107527..109293-

>mRNA_A-nodosum_M_contig1180.11.1 ID=mRNA_A-nodosum_M_contig1180.11.1|Name=mRNA_A-nodosum_M_contig1180.11.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=474bp|location=Sequence derived from alignment at A-nodosum_M_contig1180:107527..109293- (Ascophyllum nodosum dioecious)
AGGCGGCTGTTGAAAGCGACAATATATGAGCGATCCCGGGCGTTTTCTGC
CTGGCATGTAGTTCTACAATGCCCCGGGCAGTGTAAAGGCACATACTACG
CGAACAAGCATGTGATGAGGCATGGCGAGTACAAGGGACACTTTTTCCGC
GCACTCGAGGACGGGACCTCACCGAAGTATATTACGAACAAGAGCGGAAA
ATGCGCTGTGGCAGTGGCGTTTCTACGCGACGTGACCGTCATGATTTGCC
GTATGAGGGCCGGGTTCGACCAGATCAGCGATTGGTACAGGCGTACAGTA
CAAGCGACGACGGGCCAGGGGACGACTCCTCTCGCGGGGGACCAGCTACG
CACGTGCTGGGCGATATATGCGGTCCTACAGCACTTTAACGGACCAGATC
TGTGGGCGTGGGCTCCTCCCGCGGGCCACGTCATCACGTACAACACCCCC
CAAGAGGTTGTCATCATGGAGAAG
back to top