mRNA_A-nodosum_M_contig1180.10.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1180.10.1
Unique NamemRNA_A-nodosum_M_contig1180.10.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1180.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1180contigA-nodosum_M_contig1180:106056..107490 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog5346.XP_001830943.1
Model size416
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons4
Evalue0.000177
EggNOG OGs2CY2J@1|root,2S1HF@2759|Eukaryota,3AIB2@33154|Opisthokonta,3PB7J@4751|Fungi,3V4R7@5204|Basidiomycota,226FJ@155619|Agaricomycetes,3W93G@5338|Agaricales
Cds size408
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866596.8285367-CDS-A-nodosum_M_contig1180:106055..1060881680866596.8285367-CDS-A-nodosum_M_contig1180:106055..106088Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1180 106056..106088 -
1680866596.8417351-CDS-A-nodosum_M_contig1180:106783..1068971680866596.8417351-CDS-A-nodosum_M_contig1180:106783..106897Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1180 106784..106897 -
1680866596.8494444-CDS-A-nodosum_M_contig1180:106906..1069611680866596.8494444-CDS-A-nodosum_M_contig1180:106906..106961Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1180 106907..106961 -
1680866596.8571477-CDS-A-nodosum_M_contig1180:107276..1074821680866596.8571477-CDS-A-nodosum_M_contig1180:107276..107482Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1180 107277..107482 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866596.8650715-UTR-A-nodosum_M_contig1180:107482..1074901680866596.8650715-UTR-A-nodosum_M_contig1180:107482..107490Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1180 107483..107490 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1180.10.1prot_A-nodosum_M_contig1180.10.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1180 106056..107482 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1180.10.1

>prot_A-nodosum_M_contig1180.10.1 ID=prot_A-nodosum_M_contig1180.10.1|Name=mRNA_A-nodosum_M_contig1180.10.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=136bp
MDDINSNFWQGQNAIWVSHQCSLCTQNIDMQGGPILVQAAVCDGNANVGY
RRCAVKNCPLDIADNNRDRFCPVHAYHENACLLCEEEGFQTCEAHASNET
AWERYQYRGSYNLRRRAAAAGEEYEAGEYRALKAAF
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mRNA from alignment at A-nodosum_M_contig1180:106056..107490-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1180.10.1 ID=mRNA_A-nodosum_M_contig1180.10.1|Name=mRNA_A-nodosum_M_contig1180.10.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1435bp|location=Sequence derived from alignment at A-nodosum_M_contig1180:106056..107490- (Ascophyllum nodosum dioecious)
TTGATGTCATGGACGACATCAACTCAAATTTCTGGCAAGGGCAAAACGCA
ATCTGGGTCTCGCATCAGTGCTCTCTTTGCACCCAAAATATCGATATGCA
GGGTGGGCCAATCCTTGTCCAGGCAGCGGTTTGCGACGGCAACGCCAACG
TGGGATACAGGCGTTGCGCTGTGAAAAACTGCCCTTTAGACATAGCGGAT
AACAACCGCGATAGGTAAGGCTCCCCTTTCGCCCTCTATTTCCTTGCGAC
GGTCGCACATAGTAAGTGGCGCCCAAACTTGGAAATCACTATTTCGCACG
CATTGCGTGGTGCTCGCTTGAAATTATGGCTCTCATTAGTTCTCGGGAGT
ACTGCTTTCTGGTGCTGTTTTGTTTTGCCAGACGTATATTTTGACGCCGT
GTTGTGACAAGTCCGCCCATGCGGAACTGGAAGGGCTTCACCAGTGTGTC
TTGAAGAAATTTTGATGGAAACTTCGTCGGTGCCAGATGATCTACTGTGC
GCGTCACGTGTTTCTGTTGTTATTAACAGATTCTGTCCGGTTCATGCGTA
CCACGAGAATGCCTGCCTGCTATGCGAGGAGGAGGCGAGGGAGGGGTTCC
AGACATGCGAAGCCCACGCATCTAATGAGACGGCCTGGGAACGATATCAA
TACCGTGGGTCCTATAACTTGCGGCGGCGAGCGGCGGCTGCCGGAGAGGA
GTACGAGGTGAGTGAAAACAAACATGCCGGGGATGCAGACTGGCGTGATA
CAGAATGTGCATATATGTATATGTTATAAAAAACGCGAACCTATATGAAA
CCCGTATTTCGCTGGGAACGCCTATTTGCAGTCCATGGACTTTCAGAGAG
AACCACAGTCCAAACATCATCTTTACTTCTTATATTGCTTTTGCCAACCC
GACCCATATCGCTAACGCTAACCCAGACCCCCACCCCAGCTGACCGCGTG
GTCCCAATTCATAGCTGGCGTCCGCTTGGTCATGGTACCGTGTGGGCTGG
TTTTGTGTGCGTCTCTGGTTCGGTTTTTGTATCTGGTGCGAACCCAATCT
AAGAAGTAAAGATCCACGGCAGTGGGCTGGTTTCTCCTGTTCACAGTATA
GATGATGTTTGGACTGTGGTTCTCTCTGAAAGTCCATGGACTGCAAATAG
GTAAATCCTATTTCGCTTTGGACTCGTGGGATTCGCAGTTTGTGAAAGCG
TACAGTAGAATAAAAGATCTTGCAGTGGGGTTACCCCCGCGGGCGCAGGA
AAAGGTCGTCCGGCATTACAACCACCACGAAGTATTATCGAACTCACACG
TATCCCATCTTGAATACAGACCAGCCGATTAGCGCCCGTAAATGTTTAAT
GTGCTGTTGAAACGGTTGTTTCCCTTAACGTGCGCTCCGCTGGATGGTCC
AGGCCGGCGAATACCGGGCGCTTAAGGCCGCGTTC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1180:106056..107490-

>mRNA_A-nodosum_M_contig1180.10.1 ID=mRNA_A-nodosum_M_contig1180.10.1|Name=mRNA_A-nodosum_M_contig1180.10.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=408bp|location=Sequence derived from alignment at A-nodosum_M_contig1180:106056..107490- (Ascophyllum nodosum dioecious)
ATGGACGACATCAACTCAAATTTCTGGCAAGGGCAAAACGCAATCTGGGT
CTCGCATCAGTGCTCTCTTTGCACCCAAAATATCGATATGCAGGGTGGGC
CAATCCTTGTCCAGGCAGCGGTTTGCGACGGCAACGCCAACGTGGGATAC
AGGCGTTGCGCTGTGAAAAACTGCCCTTTAGACATAGCGGATAACAACCG
CGATAGATTCTGTCCGGTTCATGCGTACCACGAGAATGCCTGCCTGCTAT
GCGAGGAGGAGGGGTTCCAGACATGCGAAGCCCACGCATCTAATGAGACG
GCCTGGGAACGATATCAATACCGTGGGTCCTATAACTTGCGGCGGCGAGC
GGCGGCTGCCGGAGAGGAGTACGAGGCCGGCGAATACCGGGCGCTTAAGG
CCGCGTTC
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